CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 477 | C477Y | C657Y | nonsyn | tGt | tAt | 714 | 714 | 1 | 2234-2236 |
ORF1ab/nsp2 | 477 | C477F | C657F | nonsyn | tGt | tTt | 137 | 135 | 0.985401 | 2234-2236 |
ORF1ab/nsp2 | 477 | C477F | C657F | nonsyn | tGT | tTC | 137 | 2 | 0.0145985 | 2234-2236 |
ORF1ab/nsp2 | 477 | C477C | C657C | syn | tgT | tgC | 112 | 112 | 1 | 2234-2236 |
ORF1ab/nsp2 | 477 | C477X | C657X | nonsyn | tgT | tgA | 87 | 85 | 0.977012 | 2234-2236 |
ORF1ab/nsp2 | 477 | C477X | C657X | nonsyn | tGT | tAA | 87 | 2 | 0.0229885 | 2234-2236 |
ORF1ab/nsp2 | 477 | C477S | C657S | nonsyn | Tgt | Agt | 79 | 76 | 0.962025 | 2234-2236 |
ORF1ab/nsp2 | 477 | C477S | C657S | nonsyn | tGt | tCt | 79 | 2 | 0.0253165 | 2234-2236 |
ORF1ab/nsp2 | 477 | C477S | C657S | nonsyn | tGT | tCA | 79 | 1 | 0.0126582 | 2234-2236 |
ORF1ab/nsp2 | 477 | C477del | C657del | del | TGT | --- | 40 | 40 | 1 | 2234-2236 |
ORF1ab/nsp2 | 477 | C477del1 | C657del1 | del | tGT | tA- | 22 | 20 | 0.909091 | 2234-2236 |
ORF1ab/nsp2 | 477 | C477del1 | C657del1 | del | tgT | tg- | 22 | 1 | 0.0454545 | 2234-2236 |
ORF1ab/nsp2 | 477 | C477del1 | C657del1 | del | TgT | Ag- | 22 | 1 | 0.0454545 | 2234-2236 |
ORF1ab/nsp2 | 477 | C477G | C657G | nonsyn | Tgt | Ggt | 10 | 10 | 1 | 2234-2236 |
ORF1ab/nsp2 | 477 | C477R | C657R | nonsyn | Tgt | Cgt | 10 | 8 | 0.8 | 2234-2236 |
ORF1ab/nsp2 | 477 | C477R | C657R | nonsyn | TgT | AgA | 10 | 2 | 0.2 | 2234-2236 |
ORF1ab/nsp2 | 477 | C477del2 | C657del2 | del | TGt | --t | 5 | 3 | 0.6 | 2234-2236 |
ORF1ab/nsp2 | 477 | C477del2 | C657del2 | del | TGT | --A | 5 | 2 | 0.4 | 2234-2236 |
ORF1ab/nsp2 | 477 | C477N | C657N | nonsyn | TGt | AAt | 3 | 3 | 1 | 2234-2236 |
ORF1ab/nsp2 | 477 | C477Q | C657Q | nonsyn | TGT | CAA | 2 | 2 | 1 | 2234-2236 |
ORF1ab/nsp2 | 477 | C477W | C657W | nonsyn | tgT | tgG | 2 | 2 | 1 | 2234-2236 |
ORF1ab/nsp2 | 477 | C477L | C657L | nonsyn | tGT | tTA | 2 | 1 | 0.5 | 2234-2236 |
ORF1ab/nsp2 | 477 | C477L | C657L | nonsyn | TGT | CTA | 2 | 1 | 0.5 | 2234-2236 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 714 | 714 | All | 0.000137 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 223 | 223 | AY.4 | 0.000347 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 135 | 137 | All | 0.000026 |
ORF1ab/nsp2 | 477 | C477F | tGT | tTC | 2 | 137 | All | 0 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 129 | 129 | B.1.177 | 0.001699 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 112 | 112 | All | 0.000021 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 85 | 87 | All | 0.000016 |
ORF1ab/nsp2 | 477 | C477X | tGT | tAA | 2 | 87 | All | 0 |
ORF1ab/nsp2 | 477 | C477S | Tgt | Agt | 76 | 79 | All | 0.000015 |
ORF1ab/nsp2 | 477 | C477S | tGt | tCt | 2 | 79 | All | 0 |
ORF1ab/nsp2 | 477 | C477S | tGT | tCA | 1 | 79 | All | 0 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 65 | 65 | AY.25 | 0.000391 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 53 | 55 | B.1.1.7 | 0.000047 |
ORF1ab/nsp2 | 477 | C477F | tGT | tTC | 2 | 55 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 53 | 53 | B.1.1.318 | 0.015993 |
ORF1ab/nsp2 | 477 | C477S | Tgt | Agt | 53 | 53 | B.1.637 | 0.003873 |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 40 | 40 | All | 0.000008 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 34 | 34 | AY.44 | 0.000207 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 25 | 25 | B.1.1.7 | 0.000022 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 25 | 25 | B.1.617.2 | 0.000094 |
ORF1ab/nsp2 | 477 | C477del1 | tGT | tA- | 20 | 22 | All | 0.000004 |
ORF1ab/nsp2 | 477 | C477del1 | tgT | tg- | 1 | 22 | All | 0 |
ORF1ab/nsp2 | 477 | C477del1 | TgT | Ag- | 1 | 22 | All | 0 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 22 | 22 | AY.5 | 0.000454 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 21 | 21 | B.1.177.37 | 0.567568 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 21 | 21 | B.1.177.7 | 0.003462 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 20 | 20 | B.1.400 | 0.00858 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 14 | 14 | AY.120.1 | 0.004494 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 14 | 14 | AY.29.1 | 0.003087 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 14 | 14 | B.1.243 | 0.000974 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 13 | 13 | AY.9.2 | 0.000477 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp2 | 477 | C477G | Tgt | Ggt | 10 | 10 | All | 0.000002 |
ORF1ab/nsp2 | 477 | C477R | Tgt | Cgt | 8 | 10 | All | 0.000002 |
ORF1ab/nsp2 | 477 | C477R | TgT | AgA | 2 | 10 | All | 0 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 9 | 9 | AY.34 | 0.000873 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 8 | 8 | AY.39 | 0.000198 |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp2 | 477 | C477S | Tgt | Agt | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp2 | 477 | C477del1 | tGT | tA- | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 6 | 7 | B.1.2 | 0.000053 |
ORF1ab/nsp2 | 477 | C477X | tGT | tAA | 1 | 7 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 7 | 7 | B.1.243 | 0.000487 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 6 | 6 | AY.58 | 0.005445 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp2 | 477 | C477del2 | TGt | --t | 3 | 5 | All | 0.000001 |
ORF1ab/nsp2 | 477 | C477del2 | TGT | --A | 2 | 5 | All | 0 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 4 | 5 | B.1.617.2 | 0.000015 |
ORF1ab/nsp2 | 477 | C477X | tGT | tAA | 1 | 5 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 5 | 5 | D.2 | 0.000375 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 5 | 5 | P.1.12 | 0.00242 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 4 | 4 | B.1.351.2 | 0.00121 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 4 | 4 | B.1.36.27 | 0.003053 |
ORF1ab/nsp2 | 477 | C477N | TGt | AAt | 3 | 3 | All | 0.000001 |
ORF1ab/nsp2 | 477 | C477S | Tgt | Agt | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp2 | 477 | C477S | Tgt | Agt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 477 | C477del1 | tGT | tA- | 2 | 3 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 477 | C477del1 | TgT | Ag- | 1 | 3 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp2 | 477 | C477Q | TGT | CAA | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 477 | C477W | tgT | tgG | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 477 | C477L | TGT | CTA | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 477 | C477L | tGT | tTA | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp2 | 477 | C477del1 | tGT | tA- | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 2 | 2 | AY.119 | 0.000071 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp2 | 477 | C477G | Tgt | Ggt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 477 | C477R | Tgt | Cgt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 477 | C477G | Tgt | Ggt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp2 | 477 | C477S | tGT | tCA | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 477 | C477L | tGT | tTA | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 477 | C477S | Tgt | Agt | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 477 | C477L | TGT | CTA | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 477 | C477G | Tgt | Ggt | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp2 | 477 | C477S | Tgt | Agt | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 477 | C477S | Tgt | Agt | 2 | 2 | B.1.556 | 0.015038 |
ORF1ab/nsp2 | 477 | C477del1 | tGT | tA- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 477 | C477R | TgT | AgA | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 477 | C477N | TGt | AAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 477 | C477S | Tgt | Agt | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp2 | 477 | C477R | Tgt | Cgt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 1 | 1 | AT.1 | 0.005128 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 477 | C477R | Tgt | Cgt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 477 | C477S | Tgt | Agt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 477 | C477R | Tgt | Cgt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 477 | C477del1 | tGT | tA- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp2 | 477 | C477G | Tgt | Ggt | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 477 | C477del1 | tGT | tA- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 477 | C477G | Tgt | Ggt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 477 | C477W | tgT | tgG | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 477 | C477del2 | TGT | --A | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 477 | C477del1 | tGT | tA- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 1 | 1 | AY.76 | 0.004831 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 1 | 1 | AY.82 | 0.001357 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 477 | C477del1 | tGT | tA- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 477 | C477del1 | tGT | tA- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 477 | C477del1 | tgT | tg- | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 1 | 1 | B.1.1.208 | 0.012195 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 477 | C477S | tGt | tCt | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp2 | 477 | C477R | Tgt | Cgt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 477 | C477del1 | tGT | tA- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 477 | C477Q | TGT | CAA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 477 | C477W | tgT | tgG | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 477 | C477N | TGt | AAt | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 477 | C477del2 | TGt | --t | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 477 | C477S | Tgt | Agt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 477 | C477del2 | TGt | --t | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 477 | C477R | Tgt | Cgt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 477 | C477N | TGt | AAt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 477 | C477Q | TGT | CAA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp2 | 477 | C477R | Tgt | Cgt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 1 | 1 | B.1.258.10 | 0.011364 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 1 | 1 | B.1.258.5 | 0.008772 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp2 | 477 | C477del1 | tGT | tA- | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp2 | 477 | C477X | tgT | tgA | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 477 | C477G | Tgt | Ggt | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 477 | C477Y | tGt | tAt | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp2 | 477 | C477del2 | TGt | --t | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 477 | C477S | Tgt | Agt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 477 | C477G | Tgt | Ggt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 477 | C477del2 | TGT | --A | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 477 | C477F | tGt | tTt | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp2 | 477 | C477S | tGt | tCt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 477 | C477C | tgT | tgC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 477 | C477del | TGT | --- | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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