CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 477

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2477C477YC657YnonsyntGttAt71471412234-2236
ORF1ab/nsp2477C477FC657FnonsyntGttTt1371350.9854012234-2236
ORF1ab/nsp2477C477FC657FnonsyntGTtTC13720.01459852234-2236
ORF1ab/nsp2477C477CC657CsyntgTtgC11211212234-2236
ORF1ab/nsp2477C477XC657XnonsyntgTtgA87850.9770122234-2236
ORF1ab/nsp2477C477XC657XnonsyntGTtAA8720.02298852234-2236
ORF1ab/nsp2477C477SC657SnonsynTgtAgt79760.9620252234-2236
ORF1ab/nsp2477C477SC657SnonsyntGttCt7920.02531652234-2236
ORF1ab/nsp2477C477SC657SnonsyntGTtCA7910.01265822234-2236
ORF1ab/nsp2477C477delC657deldelTGT---404012234-2236
ORF1ab/nsp2477C477del1C657del1deltGTtA-22200.9090912234-2236
ORF1ab/nsp2477C477del1C657del1deltgTtg-2210.04545452234-2236
ORF1ab/nsp2477C477del1C657del1delTgTAg-2210.04545452234-2236
ORF1ab/nsp2477C477GC657GnonsynTgtGgt101012234-2236
ORF1ab/nsp2477C477RC657RnonsynTgtCgt1080.82234-2236
ORF1ab/nsp2477C477RC657RnonsynTgTAgA1020.22234-2236
ORF1ab/nsp2477C477del2C657del2delTGt--t530.62234-2236
ORF1ab/nsp2477C477del2C657del2delTGT--A520.42234-2236
ORF1ab/nsp2477C477NC657NnonsynTGtAAt3312234-2236
ORF1ab/nsp2477C477QC657QnonsynTGTCAA2212234-2236
ORF1ab/nsp2477C477WC657WnonsyntgTtgG2212234-2236
ORF1ab/nsp2477C477LC657LnonsyntGTtTA210.52234-2236
ORF1ab/nsp2477C477LC657LnonsynTGTCTA210.52234-2236

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2477C477YtGttAt714714All0.000137
ORF1ab/nsp2477C477YtGttAt223223AY.40.000347
ORF1ab/nsp2477C477FtGttTt135137All0.000026
ORF1ab/nsp2477C477FtGTtTC2137All0
ORF1ab/nsp2477C477YtGttAt129129B.1.1770.001699
ORF1ab/nsp2477C477CtgTtgC112112All0.000021
ORF1ab/nsp2477C477XtgTtgA8587All0.000016
ORF1ab/nsp2477C477XtGTtAA287All0
ORF1ab/nsp2477C477STgtAgt7679All0.000015
ORF1ab/nsp2477C477StGttCt279All0
ORF1ab/nsp2477C477StGTtCA179All0
ORF1ab/nsp2477C477YtGttAt6565AY.250.000391
ORF1ab/nsp2477C477FtGttTt5355B.1.1.70.000047
ORF1ab/nsp2477C477FtGTtTC255B.1.1.70.000002
ORF1ab/nsp2477C477YtGttAt5353B.1.1.3180.015993
ORF1ab/nsp2477C477STgtAgt5353B.1.6370.003873
ORF1ab/nsp2477C477delTGT---4040All0.000008
ORF1ab/nsp2477C477XtgTtgA3434AY.440.000207
ORF1ab/nsp2477C477YtGttAt2525B.1.1.70.000022
ORF1ab/nsp2477C477YtGttAt2525B.1.617.20.000094
ORF1ab/nsp2477C477del1tGTtA-2022All0.000004
ORF1ab/nsp2477C477del1tgTtg-122All0
ORF1ab/nsp2477C477del1TgTAg-122All0
ORF1ab/nsp2477C477YtGttAt2222AY.50.000454
ORF1ab/nsp2477C477CtgTtgC2121B.1.177.370.567568
ORF1ab/nsp2477C477YtGttAt2121B.1.177.70.003462
ORF1ab/nsp2477C477YtGttAt2020B.1.4000.00858
ORF1ab/nsp2477C477XtgTtgA1414AY.120.10.004494
ORF1ab/nsp2477C477CtgTtgC1414AY.29.10.003087
ORF1ab/nsp2477C477FtGttTt1414B.1.2430.000974
ORF1ab/nsp2477C477CtgTtgC1313AY.9.20.000477
ORF1ab/nsp2477C477CtgTtgC1212AY.40.000019
ORF1ab/nsp2477C477FtGttTt1111B.10.000101
ORF1ab/nsp2477C477GTgtGgt1010All0.000002
ORF1ab/nsp2477C477RTgtCgt810All0.000002
ORF1ab/nsp2477C477RTgTAgA210All0
ORF1ab/nsp2477C477YtGttAt99AY.30.00009
ORF1ab/nsp2477C477YtGttAt99AY.340.000873
ORF1ab/nsp2477C477FtGttTt99B.1.20.000079
ORF1ab/nsp2477C477FtGttTt99B.1.617.20.000034
ORF1ab/nsp2477C477FtGttTt99P.10.000142
ORF1ab/nsp2477C477XtgTtgA88AY.1030.00005
ORF1ab/nsp2477C477YtGttAt88AY.390.000198
ORF1ab/nsp2477C477delTGT---88B.1.1.70.000007
ORF1ab/nsp2477C477STgtAgt88B.1.1.70.000007
ORF1ab/nsp2477C477YtGttAt77AY.1030.000043
ORF1ab/nsp2477C477del1tGTtA-77AY.440.000043
ORF1ab/nsp2477C477CtgTtgC77B.1.1.70.000006
ORF1ab/nsp2477C477YtGttAt77B.1.20.000062
ORF1ab/nsp2477C477XtgTtgA67B.1.20.000053
ORF1ab/nsp2477C477XtGTtAA17B.1.20.000009
ORF1ab/nsp2477C477YtGttAt77B.1.2430.000487
ORF1ab/nsp2477C477YtGttAt66AY.580.005445
ORF1ab/nsp2477C477YtGttAt66AY.9.20.00022
ORF1ab/nsp2477C477del2TGt--t35All0.000001
ORF1ab/nsp2477C477del2TGT--A25All0
ORF1ab/nsp2477C477FtGttTt55AY.30.00005
ORF1ab/nsp2477C477YtGttAt55AY.440.00003
ORF1ab/nsp2477C477CtgTtgC55AY.440.00003
ORF1ab/nsp2477C477YtGttAt55B.10.000046
ORF1ab/nsp2477C477delTGT---55B.10.000046
ORF1ab/nsp2477C477XtgTtgA45B.1.617.20.000015
ORF1ab/nsp2477C477XtGTtAA15B.1.617.20.000004
ORF1ab/nsp2477C477FtGttTt55D.20.000375
ORF1ab/nsp2477C477YtGttAt55P.1.120.00242
ORF1ab/nsp2477C477YtGttAt44AY.1020.000106
ORF1ab/nsp2477C477CtgTtgC44AY.1030.000025
ORF1ab/nsp2477C477YtGttAt44AY.1210.000541
ORF1ab/nsp2477C477FtGttTt44AY.440.000024
ORF1ab/nsp2477C477YtGttAt44B.1.351.20.00121
ORF1ab/nsp2477C477YtGttAt44B.1.360.000584
ORF1ab/nsp2477C477YtGttAt44B.1.36.270.003053
ORF1ab/nsp2477C477NTGtAAt33All0.000001
ORF1ab/nsp2477C477STgtAgt33AY.1030.000019
ORF1ab/nsp2477C477YtGttAt33AY.230.000209
ORF1ab/nsp2477C477CtgTtgC33AY.30.00003
ORF1ab/nsp2477C477YtGttAt33AY.430.000013
ORF1ab/nsp2477C477YtGttAt33AY.470.000093
ORF1ab/nsp2477C477STgtAgt33B.10.000027
ORF1ab/nsp2477C477CtgTtgC33B.1.1.10.00098
ORF1ab/nsp2477C477delTGT---33B.1.1.330.001263
ORF1ab/nsp2477C477del1tGTtA-23B.1.20.000018
ORF1ab/nsp2477C477del1TgTAg-13B.1.20.000009
ORF1ab/nsp2477C477CtgTtgC33P.1.70.000958
ORF1ab/nsp2477C477QTGTCAA22All0
ORF1ab/nsp2477C477WtgTtgG22All0
ORF1ab/nsp2477C477LTGTCTA12All0
ORF1ab/nsp2477C477LtGTtTA12All0
ORF1ab/nsp2477C477YtGttAt22AY.1000.000092
ORF1ab/nsp2477C477del1tGTtA-22AY.1030.000012
ORF1ab/nsp2477C477YtGttAt22AY.1110.000366
ORF1ab/nsp2477C477YtGttAt22AY.1190.000071
ORF1ab/nsp2477C477CtgTtgC22AY.140.000176
ORF1ab/nsp2477C477CtgTtgC22AY.200.000078
ORF1ab/nsp2477C477XtgTtgA22AY.260.000057
ORF1ab/nsp2477C477GTgtGgt22AY.40.000003
ORF1ab/nsp2477C477YtGttAt22AY.420.00008
ORF1ab/nsp2477C477FtGttTt22AY.430.000009
ORF1ab/nsp2477C477YtGttAt22AY.450.000243
ORF1ab/nsp2477C477CtgTtgC22B.10.000018
ORF1ab/nsp2477C477RTgtCgt22B.10.000018
ORF1ab/nsp2477C477GTgtGgt22B.10.000018
ORF1ab/nsp2477C477FtGttTt22B.1.10.000036
ORF1ab/nsp2477C477delTGT---22B.1.1.3480.001592
ORF1ab/nsp2477C477CtgTtgC22B.1.177.210.000153
ORF1ab/nsp2477C477StGTtCA12B.1.20.000009
ORF1ab/nsp2477C477LtGTtTA12B.1.20.000009
ORF1ab/nsp2477C477STgtAgt12B.1.20.000009
ORF1ab/nsp2477C477LTGTCTA12B.1.20.000009
ORF1ab/nsp2477C477GTgtGgt22B.1.3510.000059
ORF1ab/nsp2477C477STgtAgt22B.1.36.310.003503
ORF1ab/nsp2477C477delTGT---22B.1.4240.016129
ORF1ab/nsp2477C477delTGT---22B.1.4290.000047
ORF1ab/nsp2477C477STgtAgt22B.1.5560.015038
ORF1ab/nsp2477C477del1tGTtA-22B.1.617.20.000008
ORF1ab/nsp2477C477CtgTtgC22B.1.617.20.000008
ORF1ab/nsp2477C477delTGT---22B.1.617.20.000008
ORF1ab/nsp2477C477RTgTAgA22B.1.617.20.000008
ORF1ab/nsp2477C477delTGT---22N.60.014184
ORF1ab/nsp2477C477YtGttAt110.055556
ORF1ab/nsp2477C477NTGtAAt110.055556
ORF1ab/nsp2477C477STgtAgt110.055556
ORF1ab/nsp2477C477delTGT---11A0.000387
ORF1ab/nsp2477C477CtgTtgC11A.2.40.003367
ORF1ab/nsp2477C477FtGttTt11A.210.00277
ORF1ab/nsp2477C477RTgtCgt11AD.20.000219
ORF1ab/nsp2477C477YtGttAt11AT.10.005128
ORF1ab/nsp2477C477CtgTtgC11AY.1000.000046
ORF1ab/nsp2477C477FtGttTt11AY.1020.000027
ORF1ab/nsp2477C477RTgtCgt11AY.1030.000006
ORF1ab/nsp2477C477delTGT---11AY.1080.001103
ORF1ab/nsp2477C477FtGttTt11AY.1110.000183
ORF1ab/nsp2477C477XtgTtgA11AY.1130.000142
ORF1ab/nsp2477C477YtGttAt11AY.1170.000085
ORF1ab/nsp2477C477YtGttAt11AY.1180.000063
ORF1ab/nsp2477C477XtgTtgA11AY.1200.000037
ORF1ab/nsp2477C477XtgTtgA11AY.140.000088
ORF1ab/nsp2477C477STgtAgt11AY.230.00007
ORF1ab/nsp2477C477RTgtCgt11AY.260.000028
ORF1ab/nsp2477C477del1tGTtA-11AY.260.000028
ORF1ab/nsp2477C477CtgTtgC11AY.270.000065
ORF1ab/nsp2477C477CtgTtgC11AY.290.000016
ORF1ab/nsp2477C477delTGT---11AY.29.10.000221
ORF1ab/nsp2477C477GTgtGgt11AY.30.00001
ORF1ab/nsp2477C477XtgTtgA11AY.30.00001
ORF1ab/nsp2477C477del1tGTtA-11AY.30.00001
ORF1ab/nsp2477C477CtgTtgC11AY.3.10.000085
ORF1ab/nsp2477C477GTgtGgt11AY.390.000025
ORF1ab/nsp2477C477XtgTtgA11AY.390.000025
ORF1ab/nsp2477C477FtGttTt11AY.40.000002
ORF1ab/nsp2477C477delTGT---11AY.40.000002
ORF1ab/nsp2477C477YtGttAt11AY.4.20.000022
ORF1ab/nsp2477C477CtgTtgC11AY.420.00004
ORF1ab/nsp2477C477WtgTtgG11AY.430.000004
ORF1ab/nsp2477C477XtgTtgA11AY.430.000004
ORF1ab/nsp2477C477del2TGT--A11AY.440.000006
ORF1ab/nsp2477C477del1tGTtA-11AY.470.000031
ORF1ab/nsp2477C477XtgTtgA11AY.540.000095
ORF1ab/nsp2477C477XtgTtgA11AY.590.00053
ORF1ab/nsp2477C477delTGT---11AY.60.000041
ORF1ab/nsp2477C477YtGttAt11AY.610.000105
ORF1ab/nsp2477C477CtgTtgC11AY.700.000209
ORF1ab/nsp2477C477CtgTtgC11AY.740.000116
ORF1ab/nsp2477C477delTGT---11AY.750.000056
ORF1ab/nsp2477C477YtGttAt11AY.750.000056
ORF1ab/nsp2477C477XtgTtgA11AY.750.000056
ORF1ab/nsp2477C477YtGttAt11AY.760.004831
ORF1ab/nsp2477C477XtgTtgA11AY.810.001992
ORF1ab/nsp2477C477XtgTtgA11AY.820.001357
ORF1ab/nsp2477C477YtGttAt11AY.860.00083
ORF1ab/nsp2477C477delTGT---11AY.990.001049
ORF1ab/nsp2477C477CtgTtgC11AY.99.20.000092
ORF1ab/nsp2477C477YtGttAt11B0.000128
ORF1ab/nsp2477C477del1tGTtA-11B0.000128
ORF1ab/nsp2477C477del1tGTtA-11B.10.000009
ORF1ab/nsp2477C477XtgTtgA11B.10.000009
ORF1ab/nsp2477C477XtgTtgA11B.1.10.000018
ORF1ab/nsp2477C477CtgTtgC11B.1.10.000018
ORF1ab/nsp2477C477del1tgTtg-11B.1.1.1610.003534
ORF1ab/nsp2477C477FtGttTt11B.1.1.1640.005155
ORF1ab/nsp2477C477YtGttAt11B.1.1.2080.012195
ORF1ab/nsp2477C477CtgTtgC11B.1.1.2140.000055
ORF1ab/nsp2477C477StGttCt11B.1.1.2770.000759
ORF1ab/nsp2477C477CtgTtgC11B.1.1.3060.000438
ORF1ab/nsp2477C477XtgTtgA11B.1.1.3260.001761
ORF1ab/nsp2477C477RTgtCgt11B.1.1.3720.000689
ORF1ab/nsp2477C477delTGT---11B.1.1.4160.000905
ORF1ab/nsp2477C477del1tGTtA-11B.1.1.70.000001
ORF1ab/nsp2477C477QTGTCAA11B.1.1.70.000001
ORF1ab/nsp2477C477WtgTtgG11B.1.1.70.000001
ORF1ab/nsp2477C477NTGtAAt11B.1.110.30.000718
ORF1ab/nsp2477C477FtGttTt11B.1.1770.000013
ORF1ab/nsp2477C477CtgTtgC11B.1.1770.000013
ORF1ab/nsp2477C477del2TGt--t11B.1.1770.000013
ORF1ab/nsp2477C477STgtAgt11B.1.1770.000013
ORF1ab/nsp2477C477YtGttAt11B.1.177.160.000664
ORF1ab/nsp2477C477YtGttAt11B.1.177.210.000076
ORF1ab/nsp2477C477delTGT---11B.1.1790.003759
ORF1ab/nsp2477C477CtgTtgC11B.1.20.000009
ORF1ab/nsp2477C477del2TGt--t11B.1.20.000009
ORF1ab/nsp2477C477RTgtCgt11B.1.20.000009
ORF1ab/nsp2477C477NTGtAAt11B.1.20.000009
ORF1ab/nsp2477C477QTGTCAA11B.1.20.000009
ORF1ab/nsp2477C477CtgTtgC11B.1.2100.002132
ORF1ab/nsp2477C477RTgtCgt11B.1.2210.000071
ORF1ab/nsp2477C477FtGttTt11B.1.2340.000132
ORF1ab/nsp2477C477YtGttAt11B.1.258.100.011364
ORF1ab/nsp2477C477YtGttAt11B.1.258.50.008772
ORF1ab/nsp2477C477XtgTtgA11B.1.2790.000514
ORF1ab/nsp2477C477XtgTtgA11B.1.3460.001311
ORF1ab/nsp2477C477FtGttTt11B.1.3490.000715
ORF1ab/nsp2477C477YtGttAt11B.1.3620.001541
ORF1ab/nsp2477C477YtGttAt11B.1.3710.001122
ORF1ab/nsp2477C477del1tGTtA-11B.1.3770.004566
ORF1ab/nsp2477C477CtgTtgC11B.1.3960.000706
ORF1ab/nsp2477C477FtGttTt11B.1.4260.001009
ORF1ab/nsp2477C477XtgTtgA11B.1.4260.001009
ORF1ab/nsp2477C477FtGttTt11B.1.4270.00005
ORF1ab/nsp2477C477GTgtGgt11B.1.4290.000024
ORF1ab/nsp2477C477delTGT---11B.1.5610.000397
ORF1ab/nsp2477C477YtGttAt11B.1.5640.000426
ORF1ab/nsp2477C477del2TGt--t11B.1.617.10.000129
ORF1ab/nsp2477C477STgtAgt11B.1.617.20.000004
ORF1ab/nsp2477C477GTgtGgt11B.1.617.20.000004
ORF1ab/nsp2477C477del2TGT--A11B.1.617.20.000004
ORF1ab/nsp2477C477FtGttTt11B.400.000364
ORF1ab/nsp2477C477delTGT---11B.570.015152
ORF1ab/nsp2477C477FtGttTt11B.60.00091
ORF1ab/nsp2477C477StGttCt11D.20.000075
ORF1ab/nsp2477C477delTGT---11P.10.000016
ORF1ab/nsp2477C477CtgTtgC11P.10.000016
ORF1ab/nsp2477C477delTGT---11P.1.150.000232
ORF1ab/nsp2477C477delTGT---11P.20.000187