CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 456 & Codon = aaT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2456K456NK636NnonsynaaGaaT4134060.9830512171-2173

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2456K456NaaGaaT406413All0.000078
ORF1ab/nsp2456K456NaaGaaT149149AY.40.000232
ORF1ab/nsp2456K456NaaGaaT6164B.1.1.70.000055
ORF1ab/nsp2456K456NaaGaaT5656AY.4.20.001215
ORF1ab/nsp2456K456NaaGaaT2323B.1.6280.008104
ORF1ab/nsp2456K456NaaGaaT2020B.1.617.20.000075
ORF1ab/nsp2456K456NaaGaaT1010AY.39.10.000396
ORF1ab/nsp2456K456NaaGaaT66AY.430.000027
ORF1ab/nsp2456K456NaaGaaT36AY.440.000018
ORF1ab/nsp2456K456NaaGaaT66B.10.000055
ORF1ab/nsp2456K456NaaGaaT55AY.1020.000133
ORF1ab/nsp2456K456NaaGaaT55AY.1210.000677
ORF1ab/nsp2456K456NaaGaaT55B.1.20.000044
ORF1ab/nsp2456K456NaaGaaT55P.10.000079
ORF1ab/nsp2456K456NaaGaaT44P.1.70.001277
ORF1ab/nsp2456K456NaaGaaT33AY.30.00003
ORF1ab/nsp2456K456NaaGaaT33AY.390.000074
ORF1ab/nsp2456K456NaaGaaT33AY.75.10.000541
ORF1ab/nsp2456K456NaaGaaT23B.1.5250.000226
ORF1ab/nsp2456K456NaaGaaT22AY.1030.000012
ORF1ab/nsp2456K456NaaGaaT22AY.4.40.000818
ORF1ab/nsp2456K456NaaGaaT22AY.420.00008
ORF1ab/nsp2456K456NaaGaaT22AY.60.000082
ORF1ab/nsp2456K456NaaGaaT22AY.990.002099
ORF1ab/nsp2456K456NaaGaaT22B.1.10.000036
ORF1ab/nsp2456K456NaaGaaT22B.1.4090.001563
ORF1ab/nsp2456K456NaaGaaT22B.1.4290.000047
ORF1ab/nsp2456K456NaaGaaT11AY.1110.000183
ORF1ab/nsp2456K456NaaGaaT11AY.1130.000142
ORF1ab/nsp2456K456NaaGaaT11AY.140.000088
ORF1ab/nsp2456K456NaaGaaT11AY.160.00038
ORF1ab/nsp2456K456NaaGaaT11AY.200.000039
ORF1ab/nsp2456K456NaaGaaT11AY.290.000016
ORF1ab/nsp2456K456NaaGaaT11AY.46.20.000635
ORF1ab/nsp2456K456NaaGaaT11AY.880.000884
ORF1ab/nsp2456K456NaaGaaT11AY.950.000761
ORF1ab/nsp2456K456NaaGaaT11B.1.1.3070.002532
ORF1ab/nsp2456K456NaaGaaT11B.1.1.4340.000349
ORF1ab/nsp2456K456NaaGaaT11B.1.1.5190.00004
ORF1ab/nsp2456K456NaaGaaT11B.1.177.500.004695
ORF1ab/nsp2456K456NaaGaaT11B.1.2210.000071
ORF1ab/nsp2456K456NaaGaaT11B.1.2220.001692
ORF1ab/nsp2456K456NaaGaaT11B.1.2430.00007
ORF1ab/nsp2456K456NaaGaaT11B.1.5490.007194
ORF1ab/nsp2456K456NaaGaaT11B.1.6090.000479
ORF1ab/nsp2456K456NaaGaaT11B.1.6210.000089
ORF1ab/nsp2456K456NaaGaaT11D.20.000075
ORF1ab/nsp2456K456NaaGaaT11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.