CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 456

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2456K456RK636RnonsynaAgaGg49649612171-2173
ORF1ab/nsp2456K456KK636KsynaaGaaA44944912171-2173
ORF1ab/nsp2456K456NK636NnonsynaaGaaT4134060.9830512171-2173
ORF1ab/nsp2456K456NK636NnonsynaaGaaC41370.01694922171-2173
ORF1ab/nsp2456K456TK636TnonsynaAgaCg868612171-2173
ORF1ab/nsp2456K456EK636EnonsynAagGag858512171-2173
ORF1ab/nsp2456K456delK636deldelAAG---494912171-2173
ORF1ab/nsp2456K456XK636XnonsynAagTag1080.82171-2173
ORF1ab/nsp2456K456XK636XnonsynAaGTaA1020.22171-2173
ORF1ab/nsp2456K456MK636MnonsynaAgaTg6612171-2173
ORF1ab/nsp2456K456del1K636del1delaaGaa-320.6666672171-2173
ORF1ab/nsp2456K456del1K636del1delAag-ag310.3333332171-2173
ORF1ab/nsp2456K456YK636YnonsynAaGTaT1112171-2173
ORF1ab/nsp2456K456LK636LnonsynAAgTTg1112171-2173
ORF1ab/nsp2456K456QK636QnonsynAagCag1112171-2173

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2456K456RaAgaGg496496All0.000095
ORF1ab/nsp2456K456KaaGaaA449449All0.000086
ORF1ab/nsp2456K456NaaGaaT406413All0.000078
ORF1ab/nsp2456K456NaaGaaC7413All0.000001
ORF1ab/nsp2456K456NaaGaaT149149AY.40.000232
ORF1ab/nsp2456K456RaAgaGg116116B.1.1.70.000104
ORF1ab/nsp2456K456RaAgaGg9090B.1.617.20.000339
ORF1ab/nsp2456K456TaAgaCg8686All0.000016
ORF1ab/nsp2456K456EAagGag8585All0.000016
ORF1ab/nsp2456K456KaaGaaA8383B.1.1.70.000074
ORF1ab/nsp2456K456NaaGaaT6164B.1.1.70.000055
ORF1ab/nsp2456K456NaaGaaC364B.1.1.70.000003
ORF1ab/nsp2456K456NaaGaaT5656AY.4.20.001215
ORF1ab/nsp2456K456KaaGaaA5555AY.360.008152
ORF1ab/nsp2456K456delAAG---4949All0.000009
ORF1ab/nsp2456K456TaAgaCg4040AY.250.000241
ORF1ab/nsp2456K456RaAgaGg4040AY.4.20.000868
ORF1ab/nsp2456K456RaAgaGg3636AY.1190.001271
ORF1ab/nsp2456K456KaaGaaA3636C.36.10.149378
ORF1ab/nsp2456K456RaAgaGg3131AY.1020.000822
ORF1ab/nsp2456K456KaaGaaA3131B.1.617.20.000117
ORF1ab/nsp2456K456EAagGag2525B.1.1.70.000022
ORF1ab/nsp2456K456NaaGaaT2323B.1.6280.008104
ORF1ab/nsp2456K456KaaGaaA2222AY.440.000134
ORF1ab/nsp2456K456RaAgaGg2020AY.50.000413
ORF1ab/nsp2456K456NaaGaaT2020B.1.617.20.000075
ORF1ab/nsp2456K456KaaGaaA1818AY.90.001217
ORF1ab/nsp2456K456KaaGaaA1717AY.1190.0006
ORF1ab/nsp2456K456TaAgaCg1717B.1.1770.000224
ORF1ab/nsp2456K456TaAgaCg1515B.1.177.120.002275
ORF1ab/nsp2456K456RaAgaGg1414AY.40.000022
ORF1ab/nsp2456K456RaAgaGg1414P.10.000221
ORF1ab/nsp2456K456KaaGaaA1212AY.40.000019
ORF1ab/nsp2456K456RaAgaGg1212B.1.438.40.255319
ORF1ab/nsp2456K456RaAgaGg1111AY.590.005826
ORF1ab/nsp2456K456RaAgaGg1111B.1.10.0002
ORF1ab/nsp2456K456EAagGag1111B.1.20.000097
ORF1ab/nsp2456K456XAagTag810All0.000002
ORF1ab/nsp2456K456XAaGTaA210All0
ORF1ab/nsp2456K456NaaGaaT1010AY.39.10.000396
ORF1ab/nsp2456K456KaaGaaA1010B.10.000092
ORF1ab/nsp2456K456KaaGaaA99AY.1030.000056
ORF1ab/nsp2456K456KaaGaaA99AY.430.00004
ORF1ab/nsp2456K456RaAgaGg99AY.580.008167
ORF1ab/nsp2456K456EAagGag99B.1.1.5260.031915
ORF1ab/nsp2456K456RaAgaGg99B.1.3510.000268
ORF1ab/nsp2456K456KaaGaaA88B.1.1.3571
ORF1ab/nsp2456K456KaaGaaA88B.1.1770.000105
ORF1ab/nsp2456K456KaaGaaA88B.1.3510.000238
ORF1ab/nsp2456K456KaaGaaA88B.1.5250.000905
ORF1ab/nsp2456K456KaaGaaA88P.10.000126
ORF1ab/nsp2456K456EAagGag77AY.250.000042
ORF1ab/nsp2456K456RaAgaGg77B.1.1.2320.012704
ORF1ab/nsp2456K456delAAG---77B.1.1.70.000006
ORF1ab/nsp2456K456KaaGaaA77B.1.20.000062
ORF1ab/nsp2456K456RaAgaGg77C.370.000812
ORF1ab/nsp2456K456MaAgaTg66All0.000001
ORF1ab/nsp2456K456KaaGaaA66AY.130.000966
ORF1ab/nsp2456K456NaaGaaT66AY.430.000027
ORF1ab/nsp2456K456NaaGaaC36AY.440.000018
ORF1ab/nsp2456K456NaaGaaT36AY.440.000018
ORF1ab/nsp2456K456NaaGaaT66B.10.000055
ORF1ab/nsp2456K456KaaGaaA66B.1.1.4580.25
ORF1ab/nsp2456K456KaaGaaA66B.1.177.70.000989
ORF1ab/nsp2456K456NaaGaaT55AY.1020.000133
ORF1ab/nsp2456K456NaaGaaT55AY.1210.000677
ORF1ab/nsp2456K456KaaGaaA55AY.250.00003
ORF1ab/nsp2456K456TaAgaCg55AY.40.000008
ORF1ab/nsp2456K456EAagGag55AY.40.000008
ORF1ab/nsp2456K456EAagGag55AY.550.004587
ORF1ab/nsp2456K456delAAG---55B.10.000046
ORF1ab/nsp2456K456NaaGaaT55B.1.20.000044
ORF1ab/nsp2456K456RaAgaGg55B.1.20.000044
ORF1ab/nsp2456K456KaaGaaA55B.1.5260.000118
ORF1ab/nsp2456K456NaaGaaT55P.10.000079
ORF1ab/nsp2456K456RaAgaGg44AY.250.000024
ORF1ab/nsp2456K456RaAgaGg44AY.430.000018
ORF1ab/nsp2456K456RaAgaGg44B.10.000037
ORF1ab/nsp2456K456XAagTag34B.10.000027
ORF1ab/nsp2456K456XAaGTaA14B.10.000009
ORF1ab/nsp2456K456KaaGaaA44B.1.2410.003247
ORF1ab/nsp2456K456delAAG---44B.1.617.20.000015
ORF1ab/nsp2456K456TaAgaCg44B.1.617.20.000015
ORF1ab/nsp2456K456NaaGaaT44P.1.70.001277
ORF1ab/nsp2456K456del1aaGaa-23All0
ORF1ab/nsp2456K456del1Aag-ag13All0
ORF1ab/nsp2456K456KaaGaaA33AY.1000.000138
ORF1ab/nsp2456K456NaaGaaT33AY.30.00003
ORF1ab/nsp2456K456NaaGaaT33AY.390.000074
ORF1ab/nsp2456K456NaaGaaT33AY.75.10.000541
ORF1ab/nsp2456K456TaAgaCg33B.10.000027
ORF1ab/nsp2456K456KaaGaaA33B.1.10.000054
ORF1ab/nsp2456K456delAAG---33B.1.1.330.001263
ORF1ab/nsp2456K456XAagTag33B.1.1.70.000003
ORF1ab/nsp2456K456NaaGaaT23B.1.5250.000226
ORF1ab/nsp2456K456NaaGaaC13B.1.5250.000113
ORF1ab/nsp2456K456KaaGaaA33B.1.5960.000261
ORF1ab/nsp2456K456KaaGaaA33N.30.017442
ORF1ab/nsp2456K456KaaGaaA220.111111
ORF1ab/nsp2456K456XAaGTaA120.055556
ORF1ab/nsp2456K456XAagTag120.055556
ORF1ab/nsp2456K456RaAgaGg22AY.1030.000012
ORF1ab/nsp2456K456NaaGaaT22AY.1030.000012
ORF1ab/nsp2456K456RaAgaGg22AY.120.10.000642
ORF1ab/nsp2456K456KaaGaaA22AY.290.000032
ORF1ab/nsp2456K456RaAgaGg22AY.30.00002
ORF1ab/nsp2456K456RaAgaGg22AY.390.000049
ORF1ab/nsp2456K456KaaGaaA22AY.39.20.003082
ORF1ab/nsp2456K456delAAG---22AY.40.000003
ORF1ab/nsp2456K456NaaGaaT22AY.4.40.000818
ORF1ab/nsp2456K456KaaGaaA22AY.4.40.000818
ORF1ab/nsp2456K456NaaGaaT22AY.420.00008
ORF1ab/nsp2456K456delAAG---22AY.430.000009
ORF1ab/nsp2456K456RaAgaGg22AY.440.000012
ORF1ab/nsp2456K456KaaGaaA22AY.460.000208
ORF1ab/nsp2456K456RaAgaGg22AY.470.000062
ORF1ab/nsp2456K456KaaGaaA22AY.50.000041
ORF1ab/nsp2456K456EAagGag22AY.530.000575
ORF1ab/nsp2456K456NaaGaaT22AY.60.000082
ORF1ab/nsp2456K456KaaGaaA22AY.610.00021
ORF1ab/nsp2456K456RaAgaGg22AY.630.000774
ORF1ab/nsp2456K456RaAgaGg22AY.750.000112
ORF1ab/nsp2456K456MaAgaTg22AY.880.001768
ORF1ab/nsp2456K456NaaGaaT22AY.990.002099
ORF1ab/nsp2456K456NaaGaaT22B.1.10.000036
ORF1ab/nsp2456K456KaaGaaA22B.1.1.2140.000111
ORF1ab/nsp2456K456KaaGaaA22B.1.1.3120.003824
ORF1ab/nsp2456K456delAAG---22B.1.1.3480.001592
ORF1ab/nsp2456K456KaaGaaA22B.1.1.3980.006452
ORF1ab/nsp2456K456MaAgaTg22B.1.1.70.000002
ORF1ab/nsp2456K456EAagGag22B.1.1770.000026
ORF1ab/nsp2456K456RaAgaGg22B.1.1890.008584
ORF1ab/nsp2456K456RaAgaGg22B.1.2340.000264
ORF1ab/nsp2456K456KaaGaaA22B.1.2430.000139
ORF1ab/nsp2456K456KaaGaaA22B.1.4040.002604
ORF1ab/nsp2456K456NaaGaaT22B.1.4090.001563
ORF1ab/nsp2456K456delAAG---22B.1.4240.016129
ORF1ab/nsp2456K456delAAG---22B.1.4290.000047
ORF1ab/nsp2456K456NaaGaaT22B.1.4290.000047
ORF1ab/nsp2456K456EAagGag22B.1.438.10.000215
ORF1ab/nsp2456K456KaaGaaA22B.1.466.20.000782
ORF1ab/nsp2456K456RaAgaGg22B.1.5260.000047
ORF1ab/nsp2456K456EAagGag22B.1.617.20.000008
ORF1ab/nsp2456K456KaaGaaA22C.360.001821
ORF1ab/nsp2456K456delAAG---22N.60.014184
ORF1ab/nsp2456K456delAAG---22P.10.000032
ORF1ab/nsp2456K456KaaGaaA22P.1.150.000465
ORF1ab/nsp2456K456delAAG---22P.20.000373
ORF1ab/nsp2456K456EAagGag110.055556
ORF1ab/nsp2456K456delAAG---11A0.000387
ORF1ab/nsp2456K456KaaGaaA11A.2.40.003367
ORF1ab/nsp2456K456RaAgaGg11A.60.005128
ORF1ab/nsp2456K456QAagCag11All0
ORF1ab/nsp2456K456LAAgTTg11All0
ORF1ab/nsp2456K456YAaGTaT11All0
ORF1ab/nsp2456K456KaaGaaA11AY.10.000396
ORF1ab/nsp2456K456RaAgaGg11AY.100.00053
ORF1ab/nsp2456K456RaAgaGg11AY.1000.000046
ORF1ab/nsp2456K456KaaGaaA11AY.1020.000027
ORF1ab/nsp2456K456MaAgaTg11AY.1030.000006
ORF1ab/nsp2456K456NaaGaaT11AY.1110.000183
ORF1ab/nsp2456K456NaaGaaT11AY.1130.000142
ORF1ab/nsp2456K456RaAgaGg11AY.1130.000142
ORF1ab/nsp2456K456RaAgaGg11AY.1170.000085
ORF1ab/nsp2456K456EAagGag11AY.1170.000085
ORF1ab/nsp2456K456KaaGaaA11AY.1200.000037
ORF1ab/nsp2456K456RaAgaGg11AY.120.20.001285
ORF1ab/nsp2456K456NaaGaaT11AY.140.000088
ORF1ab/nsp2456K456NaaGaaT11AY.160.00038
ORF1ab/nsp2456K456RaAgaGg11AY.200.000039
ORF1ab/nsp2456K456NaaGaaT11AY.200.000039
ORF1ab/nsp2456K456RaAgaGg11AY.230.00007
ORF1ab/nsp2456K456RaAgaGg11AY.260.000028
ORF1ab/nsp2456K456EAagGag11AY.260.000028
ORF1ab/nsp2456K456KaaGaaA11AY.270.000065
ORF1ab/nsp2456K456RaAgaGg11AY.280.00189
ORF1ab/nsp2456K456NaaGaaT11AY.290.000016
ORF1ab/nsp2456K456RaAgaGg11AY.290.000016
ORF1ab/nsp2456K456EAagGag11AY.360.000148
ORF1ab/nsp2456K456KaaGaaA11AY.390.000025
ORF1ab/nsp2456K456MaAgaTg11AY.40.000002
ORF1ab/nsp2456K456XAagTag11AY.40.000002
ORF1ab/nsp2456K456LAAgTTg11AY.40.000002
ORF1ab/nsp2456K456delAAG---11AY.4.50.000107
ORF1ab/nsp2456K456EAagGag11AY.420.00004
ORF1ab/nsp2456K456TaAgaCg11AY.440.000006
ORF1ab/nsp2456K456KaaGaaA11AY.450.000122
ORF1ab/nsp2456K456RaAgaGg11AY.450.000122
ORF1ab/nsp2456K456NaaGaaT11AY.46.20.000635
ORF1ab/nsp2456K456KaaGaaA11AY.470.000031
ORF1ab/nsp2456K456KaaGaaA11AY.540.000095
ORF1ab/nsp2456K456delAAG---11AY.540.000095
ORF1ab/nsp2456K456delAAG---11AY.60.000041
ORF1ab/nsp2456K456RaAgaGg11AY.610.000105
ORF1ab/nsp2456K456RaAgaGg11AY.700.000209
ORF1ab/nsp2456K456RaAgaGg11AY.740.000116
ORF1ab/nsp2456K456KaaGaaA11AY.750.000056
ORF1ab/nsp2456K456NaaGaaT11AY.880.000884
ORF1ab/nsp2456K456KaaGaaA11AY.930.000273
ORF1ab/nsp2456K456NaaGaaT11AY.950.000761
ORF1ab/nsp2456K456RaAgaGg11AY.980.000079
ORF1ab/nsp2456K456RaAgaGg11AY.990.001049
ORF1ab/nsp2456K456delAAG---11AY.990.001049
ORF1ab/nsp2456K456RaAgaGg11AY.99.20.000092
ORF1ab/nsp2456K456KaaGaaA11AZ.20.000821
ORF1ab/nsp2456K456EAagGag11B.10.000009
ORF1ab/nsp2456K456YAaGTaT11B.10.000009
ORF1ab/nsp2456K456del1aaGaa-11B.1.10.000018
ORF1ab/nsp2456K456delAAG---11B.1.10.000018
ORF1ab/nsp2456K456KaaGaaA11B.1.1.1530.001095
ORF1ab/nsp2456K456EAagGag11B.1.1.2250.007194
ORF1ab/nsp2456K456RaAgaGg11B.1.1.2940.001266
ORF1ab/nsp2456K456NaaGaaT11B.1.1.3070.002532
ORF1ab/nsp2456K456QAagCag11B.1.1.3110.000358
ORF1ab/nsp2456K456KaaGaaA11B.1.1.3690.000446
ORF1ab/nsp2456K456KaaGaaA11B.1.1.3720.000689
ORF1ab/nsp2456K456KaaGaaA11B.1.1.4090.002833
ORF1ab/nsp2456K456delAAG---11B.1.1.4160.000905
ORF1ab/nsp2456K456KaaGaaA11B.1.1.4330.001425
ORF1ab/nsp2456K456NaaGaaT11B.1.1.4340.000349
ORF1ab/nsp2456K456NaaGaaT11B.1.1.5190.00004
ORF1ab/nsp2456K456del1Aag-ag11B.1.1.70.000001
ORF1ab/nsp2456K456RaAgaGg11B.1.1100.004525
ORF1ab/nsp2456K456RaAgaGg11B.1.1280.000635
ORF1ab/nsp2456K456TaAgaCg11B.1.1600.000031
ORF1ab/nsp2456K456KaaGaaA11B.1.1600.000031
ORF1ab/nsp2456K456delAAG---11B.1.177.120.000152
ORF1ab/nsp2456K456KaaGaaA11B.1.177.160.000664
ORF1ab/nsp2456K456EAagGag11B.1.177.170.000821
ORF1ab/nsp2456K456NaaGaaT11B.1.177.500.004695
ORF1ab/nsp2456K456RaAgaGg11B.1.177.70.000165
ORF1ab/nsp2456K456delAAG---11B.1.1790.003759
ORF1ab/nsp2456K456delAAG---11B.1.20.000009
ORF1ab/nsp2456K456del1aaGaa-11B.1.20.000009
ORF1ab/nsp2456K456NaaGaaT11B.1.2210.000071
ORF1ab/nsp2456K456NaaGaaT11B.1.2220.001692
ORF1ab/nsp2456K456KaaGaaA11B.1.2340.000132
ORF1ab/nsp2456K456KaaGaaA11B.1.2400.000216
ORF1ab/nsp2456K456NaaGaaT11B.1.2430.00007
ORF1ab/nsp2456K456KaaGaaA11B.1.3490.000715
ORF1ab/nsp2456K456EAagGag11B.1.3510.00003
ORF1ab/nsp2456K456EAagGag11B.1.3560.001727
ORF1ab/nsp2456K456EAagGag11B.1.4070.035714
ORF1ab/nsp2456K456RaAgaGg11B.1.4110.003704
ORF1ab/nsp2456K456KaaGaaA11B.1.4290.000024
ORF1ab/nsp2456K456RaAgaGg11B.1.4590.004082
ORF1ab/nsp2456K456EAagGag11B.1.5260.000024
ORF1ab/nsp2456K456NaaGaaT11B.1.5490.007194
ORF1ab/nsp2456K456delAAG---11B.1.5610.000397
ORF1ab/nsp2456K456RaAgaGg11B.1.5610.000397
ORF1ab/nsp2456K456RaAgaGg11B.1.5960.000087
ORF1ab/nsp2456K456NaaGaaT11B.1.6090.000479
ORF1ab/nsp2456K456EAagGag11B.1.6210.000089
ORF1ab/nsp2456K456KaaGaaA11B.1.6210.000089
ORF1ab/nsp2456K456delAAG---11B.1.6210.000089
ORF1ab/nsp2456K456NaaGaaT11B.1.6210.000089
ORF1ab/nsp2456K456RaAgaGg11B.1.621.10.000506
ORF1ab/nsp2456K456RaAgaGg11B.1.6370.000073
ORF1ab/nsp2456K456delAAG---11B.340.013699
ORF1ab/nsp2456K456delAAG---11B.570.015152
ORF1ab/nsp2456K456KaaGaaA11C.37.10.002618
ORF1ab/nsp2456K456NaaGaaT11D.20.000075
ORF1ab/nsp2456K456RaAgaGg11D.20.000075
ORF1ab/nsp2456K456EAagGag11P.10.000016
ORF1ab/nsp2456K456KaaGaaA11P.20.000187
ORF1ab/nsp2456K456EAagGag11Q.80.000165
ORF1ab/nsp2456K456RaAgaGg11Q.80.000165
ORF1ab/nsp2456K456NaaGaaT11Q.80.000165