CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 454

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2454K454NK634NnonsynaaGaaT160415590.9719452165-2167
ORF1ab/nsp2454K454NK634NnonsynaaGaaC1604450.02805492165-2167
ORF1ab/nsp2454K454QK634QnonsynAagCag1128112812165-2167
ORF1ab/nsp2454K454EK634EnonsynAagGag8728620.9885322165-2167
ORF1ab/nsp2454K454EK634EnonsynAaGGaA872100.01146792165-2167
ORF1ab/nsp2454K454RK634RnonsynaAgaGg44944912165-2167
ORF1ab/nsp2454K454KK634KsynaaGaaA929212165-2167
ORF1ab/nsp2454K454delK634deldelAAG---545412165-2167
ORF1ab/nsp2454K454MK634MnonsynaAgaTg111112165-2167
ORF1ab/nsp2454K454TK634TnonsynaAgaCg9912165-2167
ORF1ab/nsp2454K454del1K634del1delAag-ag4412165-2167
ORF1ab/nsp2454K454del2K634del2delaAGa--320.6666672165-2167
ORF1ab/nsp2454K454del2K634del2delAAg--g310.3333332165-2167
ORF1ab/nsp2454K454XK634XnonsynAaGTaA210.52165-2167
ORF1ab/nsp2454K454XK634XnonsynAagTag210.52165-2167
ORF1ab/nsp2454K454SK634SnonsynaAGaGT1112165-2167

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2454K454NaaGaaT15591604All0.000298
ORF1ab/nsp2454K454NaaGaaC451604All0.000009
ORF1ab/nsp2454K454QAagCag11281128All0.000216
ORF1ab/nsp2454K454QAagCag932932AY.600.874296
ORF1ab/nsp2454K454EAagGag862872All0.000165
ORF1ab/nsp2454K454EAaGGaA10872All0.000002
ORF1ab/nsp2454K454EAagGag702702AY.40.001093
ORF1ab/nsp2454K454RaAgaGg449449All0.000086
ORF1ab/nsp2454K454NaaGaaT447447AY.280.844991
ORF1ab/nsp2454K454NaaGaaT304304B.1.1.2840.03265
ORF1ab/nsp2454K454RaAgaGg293293B.1.1.70.000262
ORF1ab/nsp2454K454NaaGaaT120120AY.40.000187
ORF1ab/nsp2454K454NaaGaaT117118B.1.617.20.000441
ORF1ab/nsp2454K454NaaGaaC1118B.1.617.20.000004
ORF1ab/nsp2454K454KaaGaaA9292All0.000018
ORF1ab/nsp2454K454NaaGaaT7272AY.1030.000447
ORF1ab/nsp2454K454NaaGaaT7071B.1.1.70.000063
ORF1ab/nsp2454K454NaaGaaC171B.1.1.70.000001
ORF1ab/nsp2454K454RaAgaGg5656B.1.2580.003727
ORF1ab/nsp2454K454NaaGaaC3555AY.430.000155
ORF1ab/nsp2454K454NaaGaaT2055AY.430.000089
ORF1ab/nsp2454K454delAAG---5454All0.00001
ORF1ab/nsp2454K454QAagCag5252AY.610.005448
ORF1ab/nsp2454K454NaaGaaT4747B.1.2580.003128
ORF1ab/nsp2454K454QAagCag4141B.1.617.20.000154
ORF1ab/nsp2454K454EAagGag3636AY.3.10.003069
ORF1ab/nsp2454K454NaaGaaT3232B.1.1.5190.001271
ORF1ab/nsp2454K454EAagGag3131AY.1200.001153
ORF1ab/nsp2454K454EAagGag2222B.1.617.20.000083
ORF1ab/nsp2454K454RaAgaGg2020AY.460.002082
ORF1ab/nsp2454K454EAagGag1920B.10.000174
ORF1ab/nsp2454K454EAaGGaA120B.10.000009
ORF1ab/nsp2454K454NaaGaaT2020B.1.10.000363
ORF1ab/nsp2454K454EAagGag1919AY.1030.000118
ORF1ab/nsp2454K454QAagCag1919B.1.20.000167
ORF1ab/nsp2454K454NaaGaaT1717AY.500.013589
ORF1ab/nsp2454K454NaaGaaT1515AY.1020.000398
ORF1ab/nsp2454K454RaAgaGg1515AY.40.000023
ORF1ab/nsp2454K454NaaGaaT1515B.10.000137
ORF1ab/nsp2454K454NaaGaaT1313AY.440.000079
ORF1ab/nsp2454K454KaaGaaA1212AY.260.00034
ORF1ab/nsp2454K454NaaGaaT1212AY.530.00345
ORF1ab/nsp2454K454MaAgaTg1111All0.000002
ORF1ab/nsp2454K454QAagCag1111AY.40.000017
ORF1ab/nsp2454K454RaAgaGg1010AY.4.10.007375
ORF1ab/nsp2454K454RaAgaGg1010AY.430.000044
ORF1ab/nsp2454K454NaaGaaT1010B.1.177.810.001893
ORF1ab/nsp2454K454NaaGaaT1010B.1.3510.000297
ORF1ab/nsp2454K454TaAgaCg99All0.000002
ORF1ab/nsp2454K454NaaGaaT99AY.330.000601
ORF1ab/nsp2454K454KaaGaaA99AY.40.000014
ORF1ab/nsp2454K454NaaGaaT99AY.4.20.000195
ORF1ab/nsp2454K454QAagCag99AY.470.00028
ORF1ab/nsp2454K454NaaGaaT99AY.75.10.001623
ORF1ab/nsp2454K454KaaGaaA99B.1.1.70.000008
ORF1ab/nsp2454K454NaaGaaT88AY.1190.000282
ORF1ab/nsp2454K454NaaGaaT88AY.230.000558
ORF1ab/nsp2454K454QAagCag88AY.480.003721
ORF1ab/nsp2454K454NaaGaaT78AY.610.000733
ORF1ab/nsp2454K454NaaGaaC18AY.610.000105
ORF1ab/nsp2454K454NaaGaaT88B.1.1770.000105
ORF1ab/nsp2454K454NaaGaaT78B.1.20.000062
ORF1ab/nsp2454K454NaaGaaC18B.1.20.000009
ORF1ab/nsp2454K454KaaGaaA77AY.1030.000043
ORF1ab/nsp2454K454KaaGaaA77P.10.00011
ORF1ab/nsp2454K454RaAgaGg66AY.250.000036
ORF1ab/nsp2454K454EAagGag66AY.430.000027
ORF1ab/nsp2454K454NaaGaaT66AY.710.00285
ORF1ab/nsp2454K454QAagCag66AY.75.10.001082
ORF1ab/nsp2454K454delAAG---66B.1.1.70.000005
ORF1ab/nsp2454K454MaAgaTg66B.1.1.70.000005
ORF1ab/nsp2454K454NaaGaaT66B.1.177.440.003114
ORF1ab/nsp2454K454NaaGaaT66B.1.5260.000141
ORF1ab/nsp2454K454KaaGaaA66B.1.617.20.000023
ORF1ab/nsp2454K454EAaGGaA66P.10.000095
ORF1ab/nsp2454K454NaaGaaC35AY.250.000018
ORF1ab/nsp2454K454NaaGaaT25AY.250.000012
ORF1ab/nsp2454K454NaaGaaT55AY.390.000124
ORF1ab/nsp2454K454NaaGaaT55AY.420.000201
ORF1ab/nsp2454K454RaAgaGg55AY.440.00003
ORF1ab/nsp2454K454QAagCag55AY.46.40.000823
ORF1ab/nsp2454K454delAAG---55B.10.000046
ORF1ab/nsp2454K454NaaGaaT55B.1.1600.000156
ORF1ab/nsp2454K454NaaGaaT55B.1.4000.002145
ORF1ab/nsp2454K454NaaGaaT55B.1.4290.000118
ORF1ab/nsp2454K454KaaGaaA55B.1.5260.000118
ORF1ab/nsp2454K454del1Aag-ag44All0.000001
ORF1ab/nsp2454K454NaaGaaT44AY.260.000113
ORF1ab/nsp2454K454EAagGag44AY.390.000099
ORF1ab/nsp2454K454QAagCag44AY.420.000161
ORF1ab/nsp2454K454NaaGaaT44AY.450.000487
ORF1ab/nsp2454K454QAagCag44AY.650.002132
ORF1ab/nsp2454K454EAagGag34B.1.10.000054
ORF1ab/nsp2454K454EAaGGaA14B.1.10.000018
ORF1ab/nsp2454K454NaaGaaT44B.1.1.4090.011331
ORF1ab/nsp2454K454NaaGaaT44B.1.360.000584
ORF1ab/nsp2454K454delAAG---44B.1.617.20.000015
ORF1ab/nsp2454K454KaaGaaA330.166667
ORF1ab/nsp2454K454del2aAGa--23All0
ORF1ab/nsp2454K454del2AAg--g13All0
ORF1ab/nsp2454K454delAAG---33AY.1100.000338
ORF1ab/nsp2454K454NaaGaaT33AY.1180.000188
ORF1ab/nsp2454K454delAAG---33AY.250.000018
ORF1ab/nsp2454K454NaaGaaT33AY.30.00003
ORF1ab/nsp2454K454EAagGag33AY.330.0002
ORF1ab/nsp2454K454RaAgaGg33AY.340.000291
ORF1ab/nsp2454K454delAAG---33AY.40.000005
ORF1ab/nsp2454K454KaaGaaA33AY.440.000018
ORF1ab/nsp2454K454NaaGaaT33AY.46.40.000494
ORF1ab/nsp2454K454NaaGaaT33AY.50.000062
ORF1ab/nsp2454K454NaaGaaT33AY.90.000203
ORF1ab/nsp2454K454NaaGaaT33AY.9.20.00011
ORF1ab/nsp2454K454delAAG---33B.1.1.330.001263
ORF1ab/nsp2454K454EAagGag33B.1.1770.00004
ORF1ab/nsp2454K454NaaGaaT33B.1.2210.000213
ORF1ab/nsp2454K454KaaGaaA33B.1.2340.000396
ORF1ab/nsp2454K454RaAgaGg33B.1.3090.142857
ORF1ab/nsp2454K454KaaGaaA33B.1.4270.000151
ORF1ab/nsp2454K454NaaGaaT33B.1.4270.000151
ORF1ab/nsp2454K454RaAgaGg33B.1.617.20.000011
ORF1ab/nsp2454K454RaAgaGg33B.1.6210.000266
ORF1ab/nsp2454K454QAagCag33P.10.000047
ORF1ab/nsp2454K454NaaGaaT33P.10.000047
ORF1ab/nsp2454K454EAaGGaA120.055556
ORF1ab/nsp2454K454EAagGag120.055556
ORF1ab/nsp2454K454XAaGTaA120.055556
ORF1ab/nsp2454K454XAagTag120.055556
ORF1ab/nsp2454K454XAagTag12All0
ORF1ab/nsp2454K454XAaGTaA12All0
ORF1ab/nsp2454K454NaaGaaT22AY.1000.000092
ORF1ab/nsp2454K454EAagGag22AY.1000.000092
ORF1ab/nsp2454K454KaaGaaA22AY.1020.000053
ORF1ab/nsp2454K454QAagCag22AY.1030.000012
ORF1ab/nsp2454K454KaaGaaA22AY.1190.000071
ORF1ab/nsp2454K454QAagCag22AY.130.000322
ORF1ab/nsp2454K454KaaGaaA22AY.30.00002
ORF1ab/nsp2454K454EAagGag22AY.30.00002
ORF1ab/nsp2454K454NaaGaaT22AY.350.000466
ORF1ab/nsp2454K454NaaGaaT22AY.39.10.000079
ORF1ab/nsp2454K454EAagGag22AY.4.20.000043
ORF1ab/nsp2454K454RaAgaGg22AY.4.50.000215
ORF1ab/nsp2454K454NaaGaaT22AY.4.50.000215
ORF1ab/nsp2454K454delAAG---22AY.430.000009
ORF1ab/nsp2454K454QAagCag22AY.430.000009
ORF1ab/nsp2454K454QAagCag22AY.670.000929
ORF1ab/nsp2454K454QAagCag22AY.680.000547
ORF1ab/nsp2454K454QAagCag22AY.730.001331
ORF1ab/nsp2454K454QAagCag22AY.750.000112
ORF1ab/nsp2454K454NaaGaaT22AY.940.000885
ORF1ab/nsp2454K454QAagCag22B.10.000018
ORF1ab/nsp2454K454KaaGaaA22B.1.10.000036
ORF1ab/nsp2454K454TaAgaCg22B.1.1.3160.00185
ORF1ab/nsp2454K454delAAG---22B.1.1.3480.001592
ORF1ab/nsp2454K454NaaGaaT22B.1.177.150.001262
ORF1ab/nsp2454K454RaAgaGg22B.1.258.140.001961
ORF1ab/nsp2454K454delAAG---22B.1.4240.016129
ORF1ab/nsp2454K454delAAG---22B.1.4290.000047
ORF1ab/nsp2454K454NaaGaaT22B.1.4750.285714
ORF1ab/nsp2454K454KaaGaaA22B.1.5250.000226
ORF1ab/nsp2454K454NaaGaaT22B.1.6230.001073
ORF1ab/nsp2454K454NaaGaaT22C.370.000232
ORF1ab/nsp2454K454NaaGaaT22D.20.00015
ORF1ab/nsp2454K454delAAG---22N.60.014184
ORF1ab/nsp2454K454delAAG---22P.10.000032
ORF1ab/nsp2454K454NaaGaaT22P.20.000373
ORF1ab/nsp2454K454delAAG---22P.20.000373
ORF1ab/nsp2454K454delAAG---11A0.000387
ORF1ab/nsp2454K454NaaGaaT11A.20.000662
ORF1ab/nsp2454K454NaaGaaT11AE.10.011364
ORF1ab/nsp2454K454SaAGaGT11All0
ORF1ab/nsp2454K454RaAgaGg11AY.10.000396
ORF1ab/nsp2454K454RaAgaGg11AY.1000.000046
ORF1ab/nsp2454K454QAagCag11AY.1020.000027
ORF1ab/nsp2454K454RaAgaGg11AY.1020.000027
ORF1ab/nsp2454K454RaAgaGg11AY.1030.000006
ORF1ab/nsp2454K454NaaGaaT11AY.1040.001984
ORF1ab/nsp2454K454NaaGaaT11AY.1060.000335
ORF1ab/nsp2454K454NaaGaaT11AY.1130.000142
ORF1ab/nsp2454K454EAagGag11AY.1170.000085
ORF1ab/nsp2454K454delAAG---11AY.1190.000035
ORF1ab/nsp2454K454MaAgaTg11AY.120.000316
ORF1ab/nsp2454K454NaaGaaT11AY.1200.000037
ORF1ab/nsp2454K454RaAgaGg11AY.1200.000037
ORF1ab/nsp2454K454NaaGaaT11AY.120.10.000321
ORF1ab/nsp2454K454NaaGaaT11AY.140.000088
ORF1ab/nsp2454K454NaaGaaT11AY.16.10.00047
ORF1ab/nsp2454K454QAagCag11AY.16.10.00047
ORF1ab/nsp2454K454KaaGaaA11AY.200.000039
ORF1ab/nsp2454K454RaAgaGg11AY.230.00007
ORF1ab/nsp2454K454KaaGaaA11AY.250.000006
ORF1ab/nsp2454K454SaAGaGT11AY.260.000028
ORF1ab/nsp2454K454QAagCag11AY.260.000028
ORF1ab/nsp2454K454NaaGaaT11AY.290.000016
ORF1ab/nsp2454K454del1Aag-ag11AY.290.000016
ORF1ab/nsp2454K454NaaGaaT11AY.29.10.000221
ORF1ab/nsp2454K454MaAgaTg11AY.30.00001
ORF1ab/nsp2454K454TaAgaCg11AY.30.00001
ORF1ab/nsp2454K454NaaGaaT11AY.3.10.000085
ORF1ab/nsp2454K454KaaGaaA11AY.34.10.00051
ORF1ab/nsp2454K454QAagCag11AY.390.000025
ORF1ab/nsp2454K454RaAgaGg11AY.390.000025
ORF1ab/nsp2454K454TaAgaCg11AY.40.000002
ORF1ab/nsp2454K454MaAgaTg11AY.40.000002
ORF1ab/nsp2454K454delAAG---11AY.4.50.000107
ORF1ab/nsp2454K454TaAgaCg11AY.420.00004
ORF1ab/nsp2454K454TaAgaCg11AY.430.000004
ORF1ab/nsp2454K454QAagCag11AY.440.000006
ORF1ab/nsp2454K454KaaGaaA11AY.46.10.001027
ORF1ab/nsp2454K454NaaGaaT11AY.470.000031
ORF1ab/nsp2454K454KaaGaaA11AY.470.000031
ORF1ab/nsp2454K454KaaGaaA11AY.5.40.000277
ORF1ab/nsp2454K454QAagCag11AY.500.000799
ORF1ab/nsp2454K454QAagCag11AY.520.000814
ORF1ab/nsp2454K454NaaGaaT11AY.520.000814
ORF1ab/nsp2454K454delAAG---11AY.540.000095
ORF1ab/nsp2454K454QAagCag11AY.550.000917
ORF1ab/nsp2454K454delAAG---11AY.60.000041
ORF1ab/nsp2454K454EAagGag11AY.60.000041
ORF1ab/nsp2454K454QAagCag11AY.620.000436
ORF1ab/nsp2454K454NaaGaaT11AY.640.000595
ORF1ab/nsp2454K454NaaGaaT11AY.650.000533
ORF1ab/nsp2454K454NaaGaaT11AY.670.000464
ORF1ab/nsp2454K454QAagCag11AY.710.000475
ORF1ab/nsp2454K454NaaGaaT11AY.740.000116
ORF1ab/nsp2454K454TaAgaCg11AY.740.000116
ORF1ab/nsp2454K454KaaGaaA11AY.780.001541
ORF1ab/nsp2454K454QAagCag11AY.880.000884
ORF1ab/nsp2454K454RaAgaGg11AY.880.000884
ORF1ab/nsp2454K454NaaGaaT11AY.9.10.000084
ORF1ab/nsp2454K454QAagCag11AY.9.20.000037
ORF1ab/nsp2454K454NaaGaaT11AY.91.10.004065
ORF1ab/nsp2454K454QAagCag11AY.930.000273
ORF1ab/nsp2454K454NaaGaaT11AY.98.10.000048
ORF1ab/nsp2454K454RaAgaGg11AY.98.10.000048
ORF1ab/nsp2454K454KaaGaaA11AY.98.10.000048
ORF1ab/nsp2454K454QAagCag11AY.98.10.000048
ORF1ab/nsp2454K454NaaGaaT11B0.000128
ORF1ab/nsp2454K454KaaGaaA11B.10.000009
ORF1ab/nsp2454K454delAAG---11B.1.10.000018
ORF1ab/nsp2454K454NaaGaaT11B.1.1.2140.000055
ORF1ab/nsp2454K454NaaGaaT11B.1.1.2160.00089
ORF1ab/nsp2454K454KaaGaaA11B.1.1.3060.000438
ORF1ab/nsp2454K454EAagGag11B.1.1.330.000421
ORF1ab/nsp2454K454NaaGaaT11B.1.1.3620.005618
ORF1ab/nsp2454K454del1Aag-ag11B.1.1.3700.012658
ORF1ab/nsp2454K454delAAG---11B.1.1.4160.000905
ORF1ab/nsp2454K454RaAgaGg11B.1.1.5190.00004
ORF1ab/nsp2454K454QAagCag11B.1.1.5280.004808
ORF1ab/nsp2454K454NaaGaaT11B.1.1.530.013699
ORF1ab/nsp2454K454NaaGaaT11B.1.1.560.017857
ORF1ab/nsp2454K454EAagGag11B.1.1.570.011494
ORF1ab/nsp2454K454TaAgaCg11B.1.1.70.000001
ORF1ab/nsp2454K454EAagGag11B.1.1.70.000001
ORF1ab/nsp2454K454del1Aag-ag11B.1.1.70.000001
ORF1ab/nsp2454K454del2AAg--g11B.1.1.70.000001
ORF1ab/nsp2454K454QAagCag11B.1.110.30.000718
ORF1ab/nsp2454K454KaaGaaA11B.1.1770.000013
ORF1ab/nsp2454K454QAagCag11B.1.1770.000013
ORF1ab/nsp2454K454del2aAGa--11B.1.177.120.000152
ORF1ab/nsp2454K454NaaGaaT11B.1.177.120.000152
ORF1ab/nsp2454K454NaaGaaT11B.1.177.40.000211
ORF1ab/nsp2454K454RaAgaGg11B.1.177.600.000218
ORF1ab/nsp2454K454NaaGaaT11B.1.177.750.001041
ORF1ab/nsp2454K454delAAG---11B.1.1790.003759
ORF1ab/nsp2454K454KaaGaaA11B.1.20.000009
ORF1ab/nsp2454K454NaaGaaT11B.1.2100.002132
ORF1ab/nsp2454K454delAAG---11B.1.2340.000132
ORF1ab/nsp2454K454RaAgaGg11B.1.258.120.007874
ORF1ab/nsp2454K454NaaGaaT11B.1.258.170.000104
ORF1ab/nsp2454K454QAagCag11B.1.258.220.002667
ORF1ab/nsp2454K454MaAgaTg11B.1.3200.001245
ORF1ab/nsp2454K454NaaGaaT11B.1.351.20.000303
ORF1ab/nsp2454K454NaaGaaT11B.1.36.220.001208
ORF1ab/nsp2454K454EAaGGaA11B.1.36.350.002604
ORF1ab/nsp2454K454RaAgaGg11B.1.36.360.000602
ORF1ab/nsp2454K454NaaGaaT11B.1.36.80.001
ORF1ab/nsp2454K454NaaGaaC11B.1.36.90.003215
ORF1ab/nsp2454K454NaaGaaT11B.1.3610.001289
ORF1ab/nsp2454K454NaaGaaT11B.1.3690.000285
ORF1ab/nsp2454K454KaaGaaA11B.1.3890.001002
ORF1ab/nsp2454K454RaAgaGg11B.1.4090.000781
ORF1ab/nsp2454K454NaaGaaT11B.1.4160.001269
ORF1ab/nsp2454K454RaAgaGg11B.1.4290.000024
ORF1ab/nsp2454K454RaAgaGg11B.1.438.10.000107
ORF1ab/nsp2454K454RaAgaGg11B.1.4990.00105
ORF1ab/nsp2454K454NaaGaaT11B.1.5250.000113
ORF1ab/nsp2454K454NaaGaaT11B.1.5580.004566
ORF1ab/nsp2454K454delAAG---11B.1.5610.000397
ORF1ab/nsp2454K454NaaGaaC11B.1.5950.000261
ORF1ab/nsp2454K454NaaGaaT11B.1.5960.000087
ORF1ab/nsp2454K454del2aAGa--11B.1.617.20.000004
ORF1ab/nsp2454K454del1Aag-ag11B.1.617.20.000004
ORF1ab/nsp2454K454TaAgaCg11B.1.617.20.000004
ORF1ab/nsp2454K454MaAgaTg11B.1.617.20.000004
ORF1ab/nsp2454K454KaaGaaA11B.1.6200.000946
ORF1ab/nsp2454K454delAAG---11B.1.6210.000089
ORF1ab/nsp2454K454NaaGaaT11B.1.6210.000089
ORF1ab/nsp2454K454delAAG---11B.340.013699
ORF1ab/nsp2454K454delAAG---11B.570.015152
ORF1ab/nsp2454K454EAagGag11C.370.000116
ORF1ab/nsp2454K454RaAgaGg11P.10.000016
ORF1ab/nsp2454K454NaaGaaT11P.1.100.000269
ORF1ab/nsp2454K454KaaGaaA11P.1.140.000048
ORF1ab/nsp2454K454EAagGag11P.1.70.000319
ORF1ab/nsp2454K454NaaGaaC11P.1.70.000319