CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 452 | E452E | E632E | syn | gaA | gaG | 825 | 825 | 1 | 2159-2161 |
ORF1ab/nsp2 | 452 | E452K | E632K | nonsyn | Gaa | Aaa | 219 | 219 | 1 | 2159-2161 |
ORF1ab/nsp2 | 452 | E452V | E632V | nonsyn | gAa | gTa | 131 | 130 | 0.992366 | 2159-2161 |
ORF1ab/nsp2 | 452 | E452V | E632V | nonsyn | gAA | gTT | 131 | 1 | 0.00763359 | 2159-2161 |
ORF1ab/nsp2 | 452 | E452del1 | E632del1 | del | gaA | ga- | 122 | 100 | 0.819672 | 2159-2161 |
ORF1ab/nsp2 | 452 | E452del1 | E632del1 | del | gAa | g-a | 122 | 17 | 0.139344 | 2159-2161 |
ORF1ab/nsp2 | 452 | E452del1 | E632del1 | del | Gaa | -aa | 122 | 5 | 0.0409836 | 2159-2161 |
ORF1ab/nsp2 | 452 | E452del | E632del | del | GAA | --- | 118 | 118 | 1 | 2159-2161 |
ORF1ab/nsp2 | 452 | E452G | E632G | nonsyn | gAa | gGa | 106 | 106 | 1 | 2159-2161 |
ORF1ab/nsp2 | 452 | E452D | E632D | nonsyn | gaA | gaC | 97 | 57 | 0.587629 | 2159-2161 |
ORF1ab/nsp2 | 452 | E452D | E632D | nonsyn | gaA | gaT | 97 | 40 | 0.412371 | 2159-2161 |
ORF1ab/nsp2 | 452 | E452A | E632A | nonsyn | gAa | gCa | 42 | 42 | 1 | 2159-2161 |
ORF1ab/nsp2 | 452 | E452X | E632X | nonsyn | Gaa | Taa | 21 | 18 | 0.857143 | 2159-2161 |
ORF1ab/nsp2 | 452 | E452X | E632X | nonsyn | GAa | TGa | 21 | 3 | 0.142857 | 2159-2161 |
ORF1ab/nsp2 | 452 | E452Q | E632Q | nonsyn | Gaa | Caa | 5 | 5 | 1 | 2159-2161 |
ORF1ab/nsp2 | 452 | E452del2 | E632del2 | del | GAa | --a | 4 | 3 | 0.75 | 2159-2161 |
ORF1ab/nsp2 | 452 | E452del2 | E632del2 | del | gAA | g-- | 4 | 1 | 0.25 | 2159-2161 |
ORF1ab/nsp2 | 452 | E452I | E632I | nonsyn | GAA | ATT | 2 | 2 | 1 | 2159-2161 |
ORF1ab/nsp2 | 452 | E452L | E632L | nonsyn | GAa | TTa | 1 | 1 | 1 | 2159-2161 |
ORF1ab/nsp2 | 452 | E452R | E632R | nonsyn | GAa | CGa | 1 | 1 | 1 | 2159-2161 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 825 | 825 | All | 0.000158 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 394 | 394 | B.1.1.7 | 0.000353 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 219 | 219 | All | 0.000042 |
ORF1ab/nsp2 | 452 | E452V | gAa | gTa | 130 | 131 | All | 0.000025 |
ORF1ab/nsp2 | 452 | E452V | gAA | gTT | 1 | 131 | All | 0 |
ORF1ab/nsp2 | 452 | E452del1 | gaA | ga- | 100 | 122 | All | 0.000019 |
ORF1ab/nsp2 | 452 | E452del1 | gAa | g-a | 17 | 122 | All | 0.000003 |
ORF1ab/nsp2 | 452 | E452del1 | Gaa | -aa | 5 | 122 | All | 0.000001 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 119 | 119 | B.1.124 | 0.929688 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 118 | 118 | All | 0.000023 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 106 | 106 | All | 0.00002 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaC | 57 | 97 | All | 0.000011 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaT | 40 | 97 | All | 0.000008 |
ORF1ab/nsp2 | 452 | E452V | gAa | gTa | 58 | 59 | B.1.1.7 | 0.000052 |
ORF1ab/nsp2 | 452 | E452V | gAA | gTT | 1 | 59 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 43 | 43 | AY.4 | 0.000067 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 43 | 43 | B.1.617.2 | 0.000162 |
ORF1ab/nsp2 | 452 | E452A | gAa | gCa | 42 | 42 | All | 0.000008 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 39 | 39 | AY.25 | 0.000235 |
ORF1ab/nsp2 | 452 | E452V | gAa | gTa | 38 | 38 | AZ.2 | 0.031199 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 36 | 36 | AY.103 | 0.000224 |
ORF1ab/nsp2 | 452 | E452del1 | gaA | ga- | 29 | 32 | AY.44 | 0.000177 |
ORF1ab/nsp2 | 452 | E452del1 | gAa | g-a | 3 | 32 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 452 | E452del1 | gaA | ga- | 24 | 30 | B.1.2 | 0.000211 |
ORF1ab/nsp2 | 452 | E452del1 | gAa | g-a | 6 | 30 | B.1.2 | 0.000053 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 29 | 29 | AY.100 | 0.001334 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 25 | 25 | AY.4 | 0.000039 |
ORF1ab/nsp2 | 452 | E452X | Gaa | Taa | 18 | 21 | All | 0.000003 |
ORF1ab/nsp2 | 452 | E452X | GAa | TGa | 3 | 21 | All | 0.000001 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 20 | 20 | AY.103 | 0.000124 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 20 | 20 | P.1 | 0.000315 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaC | 14 | 19 | B.1.1.7 | 0.000013 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaT | 5 | 19 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 18 | 18 | AY.102 | 0.000477 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 18 | 18 | AY.43 | 0.00008 |
ORF1ab/nsp2 | 452 | E452A | gAa | gCa | 15 | 15 | A.2 | 0.009927 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 15 | 15 | B.1.617.2 | 0.000056 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 14 | 14 | AY.103 | 0.000087 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 13 | 13 | AY.116 | 0.003728 |
ORF1ab/nsp2 | 452 | E452del1 | gaA | ga- | 11 | 13 | AY.120.1 | 0.003531 |
ORF1ab/nsp2 | 452 | E452del1 | gAa | g-a | 2 | 13 | AY.120.1 | 0.000642 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaC | 13 | 13 | AY.47 | 0.000404 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 13 | 13 | B.1.177 | 0.000171 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 12 | 12 | B.1.1.519 | 0.000477 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 11 | 11 | AY.46 | 0.001145 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 11 | 11 | B.1 | 0.000101 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp2 | 452 | E452V | gAa | gTa | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp2 | 452 | E452del1 | gaA | ga- | 9 | 10 | AY.103 | 0.000056 |
ORF1ab/nsp2 | 452 | E452del1 | gAa | g-a | 1 | 10 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 10 | 10 | AY.4.2 | 0.000217 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 9 | 9 | AY.7.1 | 0.001014 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 9 | 9 | B.1.1.284 | 0.000967 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 9 | 9 | B.1.351 | 0.000268 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 8 | 8 | AY.39 | 0.000198 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 7 | 7 | A | 0.002709 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaC | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 7 | 7 | AY.47 | 0.000218 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaT | 7 | 7 | AY.5 | 0.000145 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 7 | 7 | B.1.427 | 0.000353 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 6 | 6 | A.2.5 | 0.002994 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 6 | 6 | AD.2 | 0.001314 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 6 | 6 | AY.99.2 | 0.000553 |
ORF1ab/nsp2 | 452 | E452del1 | gaA | ga- | 4 | 6 | B.1 | 0.000037 |
ORF1ab/nsp2 | 452 | E452del1 | Gaa | -aa | 2 | 6 | B.1 | 0.000018 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 6 | 6 | B.1.429 | 0.000141 |
ORF1ab/nsp2 | 452 | E452X | Gaa | Taa | 3 | 5 | 0.166667 | |
ORF1ab/nsp2 | 452 | E452X | GAa | TGa | 2 | 5 | 0.111111 | |
ORF1ab/nsp2 | 452 | E452Q | Gaa | Caa | 5 | 5 | All | 0.000001 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp2 | 452 | E452del1 | gaA | ga- | 4 | 5 | AY.25 | 0.000024 |
ORF1ab/nsp2 | 452 | E452del1 | gAa | g-a | 1 | 5 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaT | 3 | 5 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaC | 2 | 5 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp2 | 452 | E452del1 | gaA | ga- | 4 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 452 | E452del1 | gAa | g-a | 1 | 5 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaT | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp2 | 452 | E452del1 | gaA | ga- | 4 | 5 | B.1.617.2 | 0.000015 |
ORF1ab/nsp2 | 452 | E452del1 | gAa | g-a | 1 | 5 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 452 | E452del2 | GAa | --a | 3 | 4 | All | 0.000001 |
ORF1ab/nsp2 | 452 | E452del2 | gAA | g-- | 1 | 4 | All | 0 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp2 | 452 | E452del1 | gaA | ga- | 3 | 4 | AY.3 | 0.00003 |
ORF1ab/nsp2 | 452 | E452del1 | gAa | g-a | 1 | 4 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaC | 3 | 4 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaT | 1 | 4 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 4 | 4 | AY.99.2 | 0.000369 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp2 | 452 | E452X | Gaa | Taa | 3 | 4 | B.1 | 0.000027 |
ORF1ab/nsp2 | 452 | E452X | GAa | TGa | 1 | 4 | B.1 | 0.000009 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 4 | 4 | B.1.36.33 | 0.030303 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp2 | 452 | E452V | gAa | gTa | 4 | 4 | C.36.3 | 0.002269 |
ORF1ab/nsp2 | 452 | E452A | gAa | gCa | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 3 | 3 | AY.116.1 | 0.000934 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaC | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaT | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 452 | E452A | gAa | gCa | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 452 | E452del1 | gaA | ga- | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 452 | E452A | gAa | gCa | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp2 | 452 | E452V | gAa | gTa | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaC | 2 | 3 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaT | 1 | 3 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 3 | 3 | B.1.618 | 0.012097 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 3 | 3 | Q.8 | 0.000495 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 452 | E452I | GAA | ATT | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 452 | E452A | gAa | gCa | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaT | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaC | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaT | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp2 | 452 | E452del1 | gAa | g-a | 1 | 2 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 452 | E452del1 | gaA | ga- | 1 | 2 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaC | 1 | 2 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaT | 1 | 2 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaC | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp2 | 452 | E452A | gAa | gCa | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaC | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp2 | 452 | E452X | Gaa | Taa | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp2 | 452 | E452V | gAa | gTa | 2 | 2 | B.1.1.523 | 0.003125 |
ORF1ab/nsp2 | 452 | E452I | GAA | ATT | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 2 | 2 | B.1.177.43 | 0.002954 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaT | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 2 | 2 | B.1.456 | 0.006536 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaT | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp2 | 452 | E452A | gAa | gCa | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 2 | 2 | P.4 | 0.007605 |
ORF1ab/nsp2 | 452 | E452V | gAa | gTa | 2 | 2 | Q.4 | 0.00091 |
ORF1ab/nsp2 | 452 | E452L | GAa | TTa | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 452 | E452V | gAa | gTa | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp2 | 452 | E452R | GAa | CGa | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 452 | E452L | GAa | TTa | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 452 | E452V | gAa | gTa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp2 | 452 | E452V | gAa | gTa | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp2 | 452 | E452del1 | gaA | ga- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 452 | E452A | gAa | gCa | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 452 | E452X | Gaa | Taa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 452 | E452del1 | gaA | ga- | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp2 | 452 | E452A | gAa | gCa | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 452 | E452R | GAa | CGa | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 452 | E452A | gAa | gCa | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 452 | E452del1 | Gaa | -aa | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp2 | 452 | E452X | Gaa | Taa | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 452 | E452A | gAa | gCa | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 452 | E452del2 | GAa | --a | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 452 | E452X | Gaa | Taa | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 452 | E452X | Gaa | Taa | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 452 | E452Q | Gaa | Caa | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaC | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 452 | E452A | gAa | gCa | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 452 | E452del1 | Gaa | -aa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 452 | E452V | gAa | gTa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 452 | E452Q | Gaa | Caa | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | B.1.1.209 | 0.008929 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaT | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | B.1.1.29 | 0.010309 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp2 | 452 | E452del1 | Gaa | -aa | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 1 | 1 | B.1.1.378 | 0.007299 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaC | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 452 | E452V | gAa | gTa | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp2 | 452 | E452del2 | gAA | g-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 452 | E452X | Gaa | Taa | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 452 | E452A | gAa | gCa | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 452 | E452Q | Gaa | Caa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 452 | E452X | Gaa | Taa | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp2 | 452 | E452V | gAa | gTa | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp2 | 452 | E452del2 | GAa | --a | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 452 | E452A | gAa | gCa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 452 | E452V | gAa | gTa | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 452 | E452del2 | GAa | --a | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 452 | E452A | gAa | gCa | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 452 | E452A | gAa | gCa | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 452 | E452del1 | gaA | ga- | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 452 | E452V | gAa | gTa | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 452 | E452Q | Gaa | Caa | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 1 | 1 | B.1.281 | 0.021739 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 1 | 1 | B.1.314 | 0.007519 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaT | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp2 | 452 | E452V | gAa | gTa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 452 | E452Q | Gaa | Caa | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp2 | 452 | E452X | Gaa | Taa | 1 | 1 | B.1.36.35 | 0.002604 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | B.1.36.36 | 0.000602 |
ORF1ab/nsp2 | 452 | E452V | gAa | gTa | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 1 | 1 | B.1.413 | 0.004255 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 452 | E452G | gAa | gGa | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 452 | E452K | Gaa | Aaa | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp2 | 452 | E452X | Gaa | Taa | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp2 | 452 | E452X | Gaa | Taa | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 1 | 1 | B.34 | 0.013699 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaC | 1 | 1 | B.4.6 | 0.016667 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 452 | E452A | gAa | gCa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 452 | E452X | Gaa | Taa | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 452 | E452V | gAa | gTa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaT | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 452 | E452A | gAa | gCa | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 452 | E452del1 | gaA | ga- | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp2 | 452 | E452V | gAa | gTa | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp2 | 452 | E452D | gaA | gaC | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp2 | 452 | E452A | gAa | gCa | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp2 | 452 | E452del | GAA | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 452 | E452E | gaA | gaG | 1 | 1 | Q.2 | 0.000613 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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