CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 440

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2440V440VV620VsyngtTgtC9939730.9798592123-2125
ORF1ab/nsp2440V440VV620VsyngtTgtA993170.01711982123-2125
ORF1ab/nsp2440V440VV620VsyngtTgtG99330.003021152123-2125
ORF1ab/nsp2440V440IV620InonsynGttAtt94794712123-2125
ORF1ab/nsp2440V440FV620FnonsynGttTtt15215212123-2125
ORF1ab/nsp2440V440AV620AnonsyngTtgCt1371360.9927012123-2125
ORF1ab/nsp2440V440AV620AnonsyngTTgCC13710.007299272123-2125
ORF1ab/nsp2440V440GV620GnonsyngTtgGt505012123-2125
ORF1ab/nsp2440V440delV620deldelGTT---373712123-2125
ORF1ab/nsp2440V440del1V620del1delGtt-tt740.5714292123-2125
ORF1ab/nsp2440V440del1V620del1delgTtg-t730.4285712123-2125
ORF1ab/nsp2440V440DV620DnonsyngTtgAt6612123-2125
ORF1ab/nsp2440V440LV620LnonsynGtTCtC320.6666672123-2125
ORF1ab/nsp2440V440LV620LnonsynGttCtt310.3333332123-2125
ORF1ab/nsp2440V440del2V620del2delGTt--t1112123-2125
ORF1ab/nsp2440V440CV620CnonsynGTtTGt1112123-2125

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2440V440VgtTgtC973993All0.000186
ORF1ab/nsp2440V440VgtTgtA17993All0.000003
ORF1ab/nsp2440V440VgtTgtG3993All0.000001
ORF1ab/nsp2440V440IGttAtt947947All0.000181
ORF1ab/nsp2440V440VgtTgtC599599AY.790.725182
ORF1ab/nsp2440V440IGttAtt356356AY.40.000554
ORF1ab/nsp2440V440VgtTgtC173173AY.1030.001074
ORF1ab/nsp2440V440IGttAtt159159AY.440.000968
ORF1ab/nsp2440V440FGttTtt152152All0.000029
ORF1ab/nsp2440V440AgTtgCt136137All0.000026
ORF1ab/nsp2440V440AgTTgCC1137All0
ORF1ab/nsp2440V440IGttAtt7474B.1.617.20.000279
ORF1ab/nsp2440V440VgtTgtC7070AY.290.001104
ORF1ab/nsp2440V440IGttAtt6565B.1.1.70.000058
ORF1ab/nsp2440V440GgTtgGt5050All0.00001
ORF1ab/nsp2440V440IGttAtt4040B.10.000366
ORF1ab/nsp2440V440delGTT---3737All0.000007
ORF1ab/nsp2440V440VgtTgtC3636B.1.177.620.042908
ORF1ab/nsp2440V440FGttTtt3535P.10.000551
ORF1ab/nsp2440V440IGttAtt3232AY.30.000318
ORF1ab/nsp2440V440VgtTgtC2929B.1.10.000526
ORF1ab/nsp2440V440FGttTtt2929B.1.4290.000682
ORF1ab/nsp2440V440IGttAtt2323AY.430.000102
ORF1ab/nsp2440V440IGttAtt2222B.1.10.000399
ORF1ab/nsp2440V440IGttAtt1919AY.1030.000118
ORF1ab/nsp2440V440GgTtgGt1919B.1.2430.001322
ORF1ab/nsp2440V440GgTtgGt1717B.1.1.70.000015
ORF1ab/nsp2440V440AgTtgCt1717B.1.1.70.000015
ORF1ab/nsp2440V440FGttTtt1616AY.240.006897
ORF1ab/nsp2440V440AgTtgCt1616B.1.1.10.005227
ORF1ab/nsp2440V440VgtTgtC1516B.1.617.20.000056
ORF1ab/nsp2440V440VgtTgtA116B.1.617.20.000004
ORF1ab/nsp2440V440AgTtgCt1414B.1.617.20.000053
ORF1ab/nsp2440V440AgTtgCt1313AY.9.10.001088
ORF1ab/nsp2440V440FGttTtt1313B.1.1.70.000012
ORF1ab/nsp2440V440IGttAtt1212B.1.1.700.004093
ORF1ab/nsp2440V440IGttAtt1111AY.570.007218
ORF1ab/nsp2440V440IGttAtt1010B.1.20.000088
ORF1ab/nsp2440V440IGttAtt99B.1.438.10.000965
ORF1ab/nsp2440V440VgtTgtA88AY.610.000838
ORF1ab/nsp2440V440del1Gtt-tt47All0.000001
ORF1ab/nsp2440V440del1gTtg-t37All0.000001
ORF1ab/nsp2440V440AgTtgCt77AY.440.000043
ORF1ab/nsp2440V440DgTtgAt66All0.000001
ORF1ab/nsp2440V440IGttAtt66AY.1020.000159
ORF1ab/nsp2440V440AgTtgCt66B.1.10.000109
ORF1ab/nsp2440V440delGTT---66B.1.1.70.000005
ORF1ab/nsp2440V440AgTtgCt66B.1.1770.000079
ORF1ab/nsp2440V440FGttTtt66B.1.617.20.000023
ORF1ab/nsp2440V440IGttAtt55AY.1170.000423
ORF1ab/nsp2440V440AgTtgCt55AY.40.000008
ORF1ab/nsp2440V440FGttTtt55AY.440.00003
ORF1ab/nsp2440V440AgTtgCt45B.10.000037
ORF1ab/nsp2440V440AgTTgCC15B.10.000009
ORF1ab/nsp2440V440AgTtgCt55B.1.177.320.006748
ORF1ab/nsp2440V440FGttTtt55B.1.20.000044
ORF1ab/nsp2440V440VgtTgtA24AY.250.000012
ORF1ab/nsp2440V440VgtTgtC24AY.250.000012
ORF1ab/nsp2440V440VgtTgtC44AY.330.000267
ORF1ab/nsp2440V440IGttAtt44AY.390.000099
ORF1ab/nsp2440V440AgTtgCt44AY.610.000419
ORF1ab/nsp2440V440delGTT---44B.10.000037
ORF1ab/nsp2440V440FGttTtt44B.10.000037
ORF1ab/nsp2440V440VgtTgtC44B.10.000037
ORF1ab/nsp2440V440DgTtgAt44B.1.1.5190.000159
ORF1ab/nsp2440V440IGttAtt44B.1.177.730.002265
ORF1ab/nsp2440V440IGttAtt44B.1.2210.000284
ORF1ab/nsp2440V440IGttAtt44B.1.258.170.000416
ORF1ab/nsp2440V440FGttTtt44B.1.4270.000202
ORF1ab/nsp2440V440GgTtgGt44B.1.5260.000094
ORF1ab/nsp2440V440VgtTgtA34P.10.000047
ORF1ab/nsp2440V440VgtTgtC14P.10.000016
ORF1ab/nsp2440V440LGtTCtC23All0
ORF1ab/nsp2440V440LGttCtt13All0
ORF1ab/nsp2440V440AgTtgCt33AY.1000.000138
ORF1ab/nsp2440V440IGttAtt33AY.1010.001471
ORF1ab/nsp2440V440IGttAtt33AY.290.000047
ORF1ab/nsp2440V440VgtTgtA13AY.40.000002
ORF1ab/nsp2440V440VgtTgtG13AY.40.000002
ORF1ab/nsp2440V440VgtTgtC13AY.40.000002
ORF1ab/nsp2440V440IGttAtt33AY.4.20.000065
ORF1ab/nsp2440V440AgTtgCt33AY.430.000013
ORF1ab/nsp2440V440IGttAtt33AY.460.000312
ORF1ab/nsp2440V440FGttTtt33AY.470.000093
ORF1ab/nsp2440V440IGttAtt33AY.75.10.000541
ORF1ab/nsp2440V440VgtTgtC33AY.9.20.00011
ORF1ab/nsp2440V440VgtTgtC33AY.920.000862
ORF1ab/nsp2440V440del1Gtt-tt23B.10.000018
ORF1ab/nsp2440V440del1gTtg-t13B.10.000009
ORF1ab/nsp2440V440FGttTtt33B.1.10.000054
ORF1ab/nsp2440V440delGTT---33B.1.1.330.001263
ORF1ab/nsp2440V440VgtTgtC23B.1.1.70.000002
ORF1ab/nsp2440V440VgtTgtG13B.1.1.70.000001
ORF1ab/nsp2440V440AgTtgCt33B.1.177.830.004444
ORF1ab/nsp2440V440FGttTtt33B.1.2400.000647
ORF1ab/nsp2440V440IGttAtt33B.1.36.170.001482
ORF1ab/nsp2440V440FGttTtt33B.1.5770.002062
ORF1ab/nsp2440V440VgtTgtC33B.1.6270.006061
ORF1ab/nsp2440V440IGttAtt33N.80.09375
ORF1ab/nsp2440V440GgTtgGt220.111111
ORF1ab/nsp2440V440IGttAtt22AY.1000.000092
ORF1ab/nsp2440V440VgtTgtC22AY.1160.000574
ORF1ab/nsp2440V440IGttAtt22AY.1190.000071
ORF1ab/nsp2440V440IGttAtt22AY.150.004444
ORF1ab/nsp2440V440IGttAtt22AY.250.000012
ORF1ab/nsp2440V440AgTtgCt22AY.260.000057
ORF1ab/nsp2440V440VgtTgtC22AY.29.10.000441
ORF1ab/nsp2440V440IGttAtt22AY.360.000296
ORF1ab/nsp2440V440AgTtgCt22AY.390.000049
ORF1ab/nsp2440V440AgTtgCt22AY.39.10.000079
ORF1ab/nsp2440V440FGttTtt22AY.40.000003
ORF1ab/nsp2440V440VgtTgtC22AY.4.20.000043
ORF1ab/nsp2440V440VgtTgtC22AY.4.50.000215
ORF1ab/nsp2440V440VgtTgtC22AY.440.000012
ORF1ab/nsp2440V440IGttAtt22AY.470.000062
ORF1ab/nsp2440V440IGttAtt22AY.80.001212
ORF1ab/nsp2440V440GgTtgGt22AY.980.000158
ORF1ab/nsp2440V440IGttAtt22B0.000256
ORF1ab/nsp2440V440delGTT---22B.1.10.000036
ORF1ab/nsp2440V440IGttAtt22B.1.1.2160.001781
ORF1ab/nsp2440V440FGttTtt22B.1.1.280.000622
ORF1ab/nsp2440V440delGTT---22B.1.1.3480.001592
ORF1ab/nsp2440V440IGttAtt22B.1.1260.002551
ORF1ab/nsp2440V440AgTtgCt22B.1.1600.000062
ORF1ab/nsp2440V440AgTtgCt22B.1.177.520.003515
ORF1ab/nsp2440V440delGTT---22B.1.4240.016129
ORF1ab/nsp2440V440LGttCtt12B.1.4270.00005
ORF1ab/nsp2440V440LGtTCtC12B.1.4270.00005
ORF1ab/nsp2440V440delGTT---22B.1.4290.000047
ORF1ab/nsp2440V440VgtTgtC22B.1.5260.000047
ORF1ab/nsp2440V440FGttTtt22B.1.617.10.000258
ORF1ab/nsp2440V440GgTtgGt22B.1.617.20.000008
ORF1ab/nsp2440V440IGttAtt22B.260.029412
ORF1ab/nsp2440V440VgtTgtC22D.20.00015
ORF1ab/nsp2440V440delGTT---22N.60.014184
ORF1ab/nsp2440V440delGTT---22P.10.000032
ORF1ab/nsp2440V440IGttAtt22P.1.10.000635
ORF1ab/nsp2440V440delGTT---22P.20.000373
ORF1ab/nsp2440V440FGttTtt110.055556
ORF1ab/nsp2440V440CGTtTGt110.055556
ORF1ab/nsp2440V440IGttAtt11A0.000387
ORF1ab/nsp2440V440IGttAtt11A.2.50.000499
ORF1ab/nsp2440V440FGttTtt11A.50.001923
ORF1ab/nsp2440V440IGttAtt11AD.20.000219
ORF1ab/nsp2440V440IGttAtt11AE.80.000489
ORF1ab/nsp2440V440CGTtTGt11All0
ORF1ab/nsp2440V440del2GTt--t11All0
ORF1ab/nsp2440V440FGttTtt11AY.1030.000006
ORF1ab/nsp2440V440IGttAtt11AY.1130.000142
ORF1ab/nsp2440V440IGttAtt11AY.1180.000063
ORF1ab/nsp2440V440AgTtgCt11AY.1190.000035
ORF1ab/nsp2440V440FGttTtt11AY.1200.000037
ORF1ab/nsp2440V440LGtTCtC11AY.1200.000037
ORF1ab/nsp2440V440AgTtgCt11AY.230.00007
ORF1ab/nsp2440V440AgTtgCt11AY.250.000006
ORF1ab/nsp2440V440delGTT---11AY.250.000006
ORF1ab/nsp2440V440IGttAtt11AY.260.000028
ORF1ab/nsp2440V440FGttTtt11AY.30.00001
ORF1ab/nsp2440V440IGttAtt11AY.3.10.000085
ORF1ab/nsp2440V440VgtTgtC11AY.370.000316
ORF1ab/nsp2440V440IGttAtt11AY.4.50.000107
ORF1ab/nsp2440V440VgtTgtA11AY.420.00004
ORF1ab/nsp2440V440IGttAtt11AY.420.00004
ORF1ab/nsp2440V440VgtTgtC11AY.430.000004
ORF1ab/nsp2440V440GgTtgGt11AY.440.000006
ORF1ab/nsp2440V440IGttAtt11AY.450.000122
ORF1ab/nsp2440V440VgtTgtC11AY.450.000122
ORF1ab/nsp2440V440AgTtgCt11AY.450.000122
ORF1ab/nsp2440V440AgTtgCt11AY.470.000031
ORF1ab/nsp2440V440VgtTgtC11AY.50.000021
ORF1ab/nsp2440V440IGttAtt11AY.50.000021
ORF1ab/nsp2440V440VgtTgtC11AY.5.30.000337
ORF1ab/nsp2440V440IGttAtt11AY.5.30.000337
ORF1ab/nsp2440V440IGttAtt11AY.520.000814
ORF1ab/nsp2440V440delGTT---11AY.540.000095
ORF1ab/nsp2440V440VgtTgtC11AY.590.00053
ORF1ab/nsp2440V440IGttAtt11AY.600.000938
ORF1ab/nsp2440V440GgTtgGt11AY.600.000938
ORF1ab/nsp2440V440FGttTtt11AY.610.000105
ORF1ab/nsp2440V440IGttAtt11AY.610.000105
ORF1ab/nsp2440V440VgtTgtG11AY.7.10.000113
ORF1ab/nsp2440V440VgtTgtA11AY.710.000475
ORF1ab/nsp2440V440GgTtgGt11AY.750.000056
ORF1ab/nsp2440V440IGttAtt11AY.780.001541
ORF1ab/nsp2440V440IGttAtt11AY.860.00083
ORF1ab/nsp2440V440AgTtgCt11AY.9.20.000037
ORF1ab/nsp2440V440IGttAtt11AY.9.20.000037
ORF1ab/nsp2440V440AgTtgCt11AY.940.000443
ORF1ab/nsp2440V440IGttAtt11AY.98.10.000048
ORF1ab/nsp2440V440IGttAtt11AY.99.20.000092
ORF1ab/nsp2440V440AgTtgCt11B0.000128
ORF1ab/nsp2440V440del1Gtt-tt11B.1.10.000018
ORF1ab/nsp2440V440IGttAtt11B.1.1.1570.000913
ORF1ab/nsp2440V440FGttTtt11B.1.1.2220.000204
ORF1ab/nsp2440V440IGttAtt11B.1.1.2220.000204
ORF1ab/nsp2440V440VgtTgtC11B.1.1.280.000311
ORF1ab/nsp2440V440VgtTgtC11B.1.1.3110.000358
ORF1ab/nsp2440V440IGttAtt11B.1.1.3170.000412
ORF1ab/nsp2440V440AgTtgCt11B.1.1.3480.000796
ORF1ab/nsp2440V440IGttAtt11B.1.1.3480.000796
ORF1ab/nsp2440V440VgtTgtC11B.1.1.3710.010417
ORF1ab/nsp2440V440IGttAtt11B.1.1.4090.002833
ORF1ab/nsp2440V440delGTT---11B.1.1.4160.000905
ORF1ab/nsp2440V440IGttAtt11B.1.1.500.000679
ORF1ab/nsp2440V440IGttAtt11B.1.1.5190.00004
ORF1ab/nsp2440V440VgtTgtC11B.1.1.5210.005348
ORF1ab/nsp2440V440IGttAtt11B.1.1110.001175
ORF1ab/nsp2440V440IGttAtt11B.1.1390.000733
ORF1ab/nsp2440V440IGttAtt11B.1.1470.000756
ORF1ab/nsp2440V440FGttTtt11B.1.1600.000031
ORF1ab/nsp2440V440IGttAtt11B.1.160.160.000929
ORF1ab/nsp2440V440delGTT---11B.1.177.180.00116
ORF1ab/nsp2440V440GgTtgGt11B.1.177.420.000894
ORF1ab/nsp2440V440AgTtgCt11B.1.177.720.00339
ORF1ab/nsp2440V440del1Gtt-tt11B.1.177.770.000726
ORF1ab/nsp2440V440delGTT---11B.1.177.830.001481
ORF1ab/nsp2440V440delGTT---11B.1.1790.003759
ORF1ab/nsp2440V440AgTtgCt11B.1.20.000009
ORF1ab/nsp2440V440del1gTtg-t11B.1.20.000009
ORF1ab/nsp2440V440VgtTgtC11B.1.20.000009
ORF1ab/nsp2440V440AgTtgCt11B.1.2210.000071
ORF1ab/nsp2440V440delGTT---11B.1.2340.000132
ORF1ab/nsp2440V440FGttTtt11B.1.2390.001221
ORF1ab/nsp2440V440VgtTgtC11B.1.2430.00007
ORF1ab/nsp2440V440del1gTtg-t11B.1.258.110.000396
ORF1ab/nsp2440V440IGttAtt11B.1.3010.005917
ORF1ab/nsp2440V440FGttTtt11B.1.3510.00003
ORF1ab/nsp2440V440IGttAtt11B.1.3510.00003
ORF1ab/nsp2440V440FGttTtt11B.1.36.80.001
ORF1ab/nsp2440V440IGttAtt11B.1.3750.00082
ORF1ab/nsp2440V440AgTtgCt11B.1.3770.004566
ORF1ab/nsp2440V440FGttTtt11B.1.3780.006849
ORF1ab/nsp2440V440IGttAtt11B.1.4270.00005
ORF1ab/nsp2440V440VgtTgtC11B.1.4270.00005
ORF1ab/nsp2440V440IGttAtt11B.1.4290.000024
ORF1ab/nsp2440V440VgtTgtC11B.1.4290.000024
ORF1ab/nsp2440V440AgTtgCt11B.1.466.20.000391
ORF1ab/nsp2440V440AgTtgCt11B.1.5070.011236
ORF1ab/nsp2440V440FGttTtt11B.1.5250.000113
ORF1ab/nsp2440V440del2GTt--t11B.1.5440.006024
ORF1ab/nsp2440V440IGttAtt11B.1.5500.013699
ORF1ab/nsp2440V440delGTT---11B.1.5610.000397
ORF1ab/nsp2440V440DgTtgAt11B.1.5960.000087
ORF1ab/nsp2440V440delGTT---11B.1.617.20.000004
ORF1ab/nsp2440V440DgTtgAt11B.1.617.20.000004
ORF1ab/nsp2440V440IGttAtt11B.1.6230.000536
ORF1ab/nsp2440V440IGttAtt11B.1.6270.00202
ORF1ab/nsp2440V440AgTtgCt11B.400.000364
ORF1ab/nsp2440V440IGttAtt11B.520.010101
ORF1ab/nsp2440V440delGTT---11B.570.015152
ORF1ab/nsp2440V440FGttTtt11C.370.000116
ORF1ab/nsp2440V440AgTtgCt11D.20.000075
ORF1ab/nsp2440V440FGttTtt11D.20.000075
ORF1ab/nsp2440V440IGttAtt11P.10.000016
ORF1ab/nsp2440V440AgTtgCt11P.10.000016
ORF1ab/nsp2440V440AgTtgCt11P.1.140.000048
ORF1ab/nsp2440V440IGttAtt11P.1.150.000232
ORF1ab/nsp2440V440FGttTtt11P.1.150.000232
ORF1ab/nsp2440V440FGttTtt11P.70.004367
ORF1ab/nsp2440V440AgTtgCt11R.10.00009