CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 439

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2439T439IT619InonsynaCtaTt4984970.9979922120-2122
ORF1ab/nsp2439T439IT619InonsynaCTaTC49810.002008032120-2122
ORF1ab/nsp2439T439TT619TsynacTacC3032690.8877892120-2122
ORF1ab/nsp2439T439TT619TsynacTacG303190.06270632120-2122
ORF1ab/nsp2439T439TT619TsynacTacA303150.0495052120-2122
ORF1ab/nsp2439T439AT619AnonsynActGct18018012120-2122
ORF1ab/nsp2439T439NT619NnonsynaCtaAt1141120.9824562120-2122
ORF1ab/nsp2439T439NT619NnonsynaCTaAC11420.01754392120-2122
ORF1ab/nsp2439T439delT619deldelACT---383812120-2122
ORF1ab/nsp2439T439ST619SnonsynActTct1170.6363642120-2122
ORF1ab/nsp2439T439ST619SnonsynaCtaGt1140.3636362120-2122
ORF1ab/nsp2439T439PT619PnonsynActCct970.7777782120-2122
ORF1ab/nsp2439T439PT619PnonsynAcTCcC920.2222222120-2122
ORF1ab/nsp2439T439HT619HnonsynACtCAt320.6666672120-2122
ORF1ab/nsp2439T439del1T619del1delAct-ct320.6666672120-2122
ORF1ab/nsp2439T439HT619HnonsynACTCAC310.3333332120-2122
ORF1ab/nsp2439T439del1T619del1delacTac-310.3333332120-2122
ORF1ab/nsp2439T439LT619LnonsynACtCTt210.52120-2122
ORF1ab/nsp2439T439LT619LnonsynACTCTC210.52120-2122
ORF1ab/nsp2439T439YT619YnonsynACtTAt1112120-2122

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2439T439IaCtaTt497498All0.000095
ORF1ab/nsp2439T439IaCTaTC1498All0
ORF1ab/nsp2439T439TacTacC269303All0.000051
ORF1ab/nsp2439T439TacTacG19303All0.000004
ORF1ab/nsp2439T439TacTacA15303All0.000003
ORF1ab/nsp2439T439AActGct180180All0.000034
ORF1ab/nsp2439T439NaCtaAt112114All0.000021
ORF1ab/nsp2439T439NaCTaAC2114All0
ORF1ab/nsp2439T439TacTacC109109B.1.36.360.065623
ORF1ab/nsp2439T439IaCtaTt106106B.1.1.70.000095
ORF1ab/nsp2439T439AActGct7878AY.250.000469
ORF1ab/nsp2439T439IaCtaTt7878B.1.1.2140.004326
ORF1ab/nsp2439T439TacTacC5151B.1.1.280.015873
ORF1ab/nsp2439T439TacTacC3939P.1.170.006309
ORF1ab/nsp2439T439delACT---3838All0.000007
ORF1ab/nsp2439T439NaCtaAt3636B.1.1.70.000032
ORF1ab/nsp2439T439IaCtaTt3434B.1.6390.73913
ORF1ab/nsp2439T439IaCtaTt2727B.1.617.20.000102
ORF1ab/nsp2439T439IaCtaTt2626AY.40.00004
ORF1ab/nsp2439T439AActGct2121AY.290.000331
ORF1ab/nsp2439T439NaCtaAt2121B.1.1.2840.002255
ORF1ab/nsp2439T439IaCtaTt1919AY.250.000114
ORF1ab/nsp2439T439IaCtaTt1919AY.90.001284
ORF1ab/nsp2439T439IaCtaTt1919B.1.6160.463415
ORF1ab/nsp2439T439AActGct1616AY.430.000071
ORF1ab/nsp2439T439IaCtaTt1212AY.1030.000075
ORF1ab/nsp2439T439SActTct711All0.000001
ORF1ab/nsp2439T439SaCtaGt411All0.000001
ORF1ab/nsp2439T439IaCtaTt1111AY.10.004353
ORF1ab/nsp2439T439TacTacC1111AY.390.000272
ORF1ab/nsp2439T439AActGct1111AY.440.000067
ORF1ab/nsp2439T439TacTacC811B.1.1.70.000007
ORF1ab/nsp2439T439TacTacA211B.1.1.70.000002
ORF1ab/nsp2439T439TacTacG111B.1.1.70.000001
ORF1ab/nsp2439T439TacTacC410AY.40.000006
ORF1ab/nsp2439T439TacTacA410AY.40.000006
ORF1ab/nsp2439T439TacTacG210AY.40.000003
ORF1ab/nsp2439T439IaCtaTt1010AY.430.000044
ORF1ab/nsp2439T439NaCtaAt1010B.10.000092
ORF1ab/nsp2439T439IaCtaTt1010B.1.1600.000312
ORF1ab/nsp2439T439PActCct79All0.000001
ORF1ab/nsp2439T439PAcTCcC29All0
ORF1ab/nsp2439T439TacTacG99AY.440.000055
ORF1ab/nsp2439T439IaCtaTt99B.10.000082
ORF1ab/nsp2439T439AActGct99B.1.1.70.000008
ORF1ab/nsp2439T439AActGct99B.1.617.20.000034
ORF1ab/nsp2439T439IaCtaTt99P.10.000142
ORF1ab/nsp2439T439IaCtaTt77AY.740.00081
ORF1ab/nsp2439T439IaCtaTt77B.1.20.000062
ORF1ab/nsp2439T439TacTacA57B.1.5260.000118
ORF1ab/nsp2439T439TacTacC27B.1.5260.000047
ORF1ab/nsp2439T439NaCtaAt66AY.250.000036
ORF1ab/nsp2439T439AActGct66AY.30.00006
ORF1ab/nsp2439T439delACT---66B.1.1.70.000005
ORF1ab/nsp2439T439IaCtaTt66B.1.36.210.012959
ORF1ab/nsp2439T439PActCct350.166667
ORF1ab/nsp2439T439PAcTCcC250.111111
ORF1ab/nsp2439T439NaCtaAt55AY.470.000156
ORF1ab/nsp2439T439TacTacC55B.1.10.000091
ORF1ab/nsp2439T439AActGct55B.1.1600.000156
ORF1ab/nsp2439T439TacTacC35B.1.617.20.000011
ORF1ab/nsp2439T439TacTacG15B.1.617.20.000004
ORF1ab/nsp2439T439TacTacA15B.1.617.20.000004
ORF1ab/nsp2439T439TacTacG24AY.1030.000012
ORF1ab/nsp2439T439TacTacC24AY.1030.000012
ORF1ab/nsp2439T439IaCtaTt44AY.30.00004
ORF1ab/nsp2439T439IaCtaTt44AY.5.30.00135
ORF1ab/nsp2439T439delACT---44B.10.000037
ORF1ab/nsp2439T439TacTacC34B.10.000027
ORF1ab/nsp2439T439TacTacG14B.10.000009
ORF1ab/nsp2439T439IaCtaTt44B.1.1770.000053
ORF1ab/nsp2439T439IaCtaTt44B.1.3490.002859
ORF1ab/nsp2439T439IaCtaTt44B.1.5260.000094
ORF1ab/nsp2439T439IaCtaTt44B.1.6040.068966
ORF1ab/nsp2439T439NaCtaAt44B.1.617.20.000015
ORF1ab/nsp2439T439NaCtaAt44B.1.6190.003484
ORF1ab/nsp2439T439IaCtaTt44C.370.000464
ORF1ab/nsp2439T439IaCtaTt44Q.40.001819
ORF1ab/nsp2439T439HACtCAt230.111111
ORF1ab/nsp2439T439NaCtaAt230.111111
ORF1ab/nsp2439T439HACTCAC130.055556
ORF1ab/nsp2439T439NaCTaAC130.055556
ORF1ab/nsp2439T439HACtCAt23All0
ORF1ab/nsp2439T439del1Act-ct23All0
ORF1ab/nsp2439T439HACTCAC13All0
ORF1ab/nsp2439T439del1acTac-13All0
ORF1ab/nsp2439T439IaCtaTt33AY.1020.00008
ORF1ab/nsp2439T439TacTacC23AY.250.000012
ORF1ab/nsp2439T439TacTacG13AY.250.000006
ORF1ab/nsp2439T439IaCtaTt33AY.290.000047
ORF1ab/nsp2439T439AActGct33AY.390.000074
ORF1ab/nsp2439T439NaCtaAt33AY.40.000005
ORF1ab/nsp2439T439TacTacC23AY.430.000009
ORF1ab/nsp2439T439TacTacG13AY.430.000004
ORF1ab/nsp2439T439IaCtaTt33AY.610.000314
ORF1ab/nsp2439T439IaCtaTt33B.1.10.000054
ORF1ab/nsp2439T439delACT---33B.1.1.330.001263
ORF1ab/nsp2439T439TacTacC220.111111
ORF1ab/nsp2439T439IaCtaTt120.055556
ORF1ab/nsp2439T439LACtCTt120.055556
ORF1ab/nsp2439T439LACTCTC120.055556
ORF1ab/nsp2439T439IaCTaTC120.055556
ORF1ab/nsp2439T439LACTCTC12All0
ORF1ab/nsp2439T439LACtCTt12All0
ORF1ab/nsp2439T439NaCtaAt22AY.1030.000012
ORF1ab/nsp2439T439AActGct22AY.1030.000012
ORF1ab/nsp2439T439TacTacC22AY.1210.000271
ORF1ab/nsp2439T439IaCtaTt22AY.200.000078
ORF1ab/nsp2439T439AActGct22AY.260.000057
ORF1ab/nsp2439T439TacTacC22AY.30.00002
ORF1ab/nsp2439T439IaCtaTt22AY.39.10.000079
ORF1ab/nsp2439T439SaCtaGt22AY.40.000003
ORF1ab/nsp2439T439NaCtaAt22AY.4.20.000043
ORF1ab/nsp2439T439IaCtaTt22AY.440.000012
ORF1ab/nsp2439T439PActCct22AY.440.000012
ORF1ab/nsp2439T439TacTacC22AY.460.000208
ORF1ab/nsp2439T439TacTacC22AY.46.40.000329
ORF1ab/nsp2439T439delACT---22B.1.10.000036
ORF1ab/nsp2439T439IaCtaTt22B.1.1.2820.023256
ORF1ab/nsp2439T439delACT---22B.1.1.3480.001592
ORF1ab/nsp2439T439TacTacC22B.1.360.000292
ORF1ab/nsp2439T439IaCtaTt22B.1.360.000292
ORF1ab/nsp2439T439NaCtaAt22B.1.36.290.001035
ORF1ab/nsp2439T439delACT---22B.1.4240.016129
ORF1ab/nsp2439T439delACT---22B.1.4290.000047
ORF1ab/nsp2439T439AActGct22B.1.4290.000047
ORF1ab/nsp2439T439IaCtaTt22B.1.4290.000047
ORF1ab/nsp2439T439NaCtaAt22C.370.000232
ORF1ab/nsp2439T439TacTacC22C.370.000232
ORF1ab/nsp2439T439TacTacC22N.50.003534
ORF1ab/nsp2439T439delACT---22N.60.014184
ORF1ab/nsp2439T439delACT---22P.10.000032
ORF1ab/nsp2439T439delACT---22P.20.000373
ORF1ab/nsp2439T439YACtTAt110.055556
ORF1ab/nsp2439T439SActTct110.055556
ORF1ab/nsp2439T439SActTct11AD.20.000219
ORF1ab/nsp2439T439YACtTAt11All0
ORF1ab/nsp2439T439IaCtaTt11AY.1000.000046
ORF1ab/nsp2439T439SaCtaGt11AY.1000.000046
ORF1ab/nsp2439T439TacTacC11AY.1000.000046
ORF1ab/nsp2439T439AActGct11AY.1140.000231
ORF1ab/nsp2439T439AActGct11AY.1160.000287
ORF1ab/nsp2439T439IaCtaTt11AY.1170.000085
ORF1ab/nsp2439T439IaCtaTt11AY.1200.000037
ORF1ab/nsp2439T439IaCtaTt11AY.130.000161
ORF1ab/nsp2439T439TacTacA11AY.200.000039
ORF1ab/nsp2439T439AActGct11AY.230.00007
ORF1ab/nsp2439T439IaCtaTt11AY.230.00007
ORF1ab/nsp2439T439del1Act-ct11AY.250.000006
ORF1ab/nsp2439T439delACT---11AY.250.000006
ORF1ab/nsp2439T439IaCtaTt11AY.260.000028
ORF1ab/nsp2439T439TacTacA11AY.260.000028
ORF1ab/nsp2439T439NaCtaAt11AY.260.000028
ORF1ab/nsp2439T439TacTacC11AY.300.000396
ORF1ab/nsp2439T439IaCtaTt11AY.390.000025
ORF1ab/nsp2439T439delACT---11AY.4.50.000107
ORF1ab/nsp2439T439SActTct11AY.400.000964
ORF1ab/nsp2439T439TacTacG11AY.420.00004
ORF1ab/nsp2439T439SActTct11AY.430.000004
ORF1ab/nsp2439T439NaCtaAt11AY.440.000006
ORF1ab/nsp2439T439IaCtaTt11AY.46.10.001027
ORF1ab/nsp2439T439PActCct11AY.50.000021
ORF1ab/nsp2439T439IaCtaTt11AY.50.000021
ORF1ab/nsp2439T439delACT---11AY.540.000095
ORF1ab/nsp2439T439AActGct11AY.560.001605
ORF1ab/nsp2439T439NaCTaAC11AY.600.000938
ORF1ab/nsp2439T439IaCtaTt11AY.650.000533
ORF1ab/nsp2439T439IaCtaTt11AY.660.00107
ORF1ab/nsp2439T439IaCtaTt11AY.690.000187
ORF1ab/nsp2439T439IaCtaTt11AY.70.000196
ORF1ab/nsp2439T439AActGct11AY.70.000196
ORF1ab/nsp2439T439IaCtaTt11AY.750.000056
ORF1ab/nsp2439T439AActGct11AY.75.10.00018
ORF1ab/nsp2439T439TacTacC11AY.890.004902
ORF1ab/nsp2439T439IaCtaTt11AY.9.10.000084
ORF1ab/nsp2439T439NaCtaAt11AY.9.20.000037
ORF1ab/nsp2439T439IaCtaTt11AY.9.20.000037
ORF1ab/nsp2439T439TacTacC11AY.920.000287
ORF1ab/nsp2439T439TacTacC11AY.980.000079
ORF1ab/nsp2439T439NaCtaAt11AY.98.10.000048
ORF1ab/nsp2439T439SActTct11B0.000128
ORF1ab/nsp2439T439AActGct11B0.000128
ORF1ab/nsp2439T439AActGct11B.10.000009
ORF1ab/nsp2439T439SActTct11B.10.000009
ORF1ab/nsp2439T439NaCtaAt11B.1.10.000018
ORF1ab/nsp2439T439IaCtaTt11B.1.1.2220.000204
ORF1ab/nsp2439T439IaCtaTt11B.1.1.2540.011236
ORF1ab/nsp2439T439AActGct11B.1.1.280.000311
ORF1ab/nsp2439T439IaCtaTt11B.1.1.3010.001179
ORF1ab/nsp2439T439TacTacC11B.1.1.3480.000796
ORF1ab/nsp2439T439IaCtaTt11B.1.1.370.000193
ORF1ab/nsp2439T439delACT---11B.1.1.4160.000905
ORF1ab/nsp2439T439NaCtaAt11B.1.1.480.002874
ORF1ab/nsp2439T439IaCtaTt11B.1.1.700.000341
ORF1ab/nsp2439T439AActGct11B.1.177.120.000152
ORF1ab/nsp2439T439del1acTac-11B.1.177.180.00116
ORF1ab/nsp2439T439delACT---11B.1.177.830.001481
ORF1ab/nsp2439T439delACT---11B.1.1790.003759
ORF1ab/nsp2439T439AActGct11B.1.20.000009
ORF1ab/nsp2439T439del1Act-ct11B.1.20.000009
ORF1ab/nsp2439T439NaCtaAt11B.1.20.000009
ORF1ab/nsp2439T439TacTacC11B.1.2320.000537
ORF1ab/nsp2439T439delACT---11B.1.2340.000132
ORF1ab/nsp2439T439NaCtaAt11B.1.2410.000812
ORF1ab/nsp2439T439TacTacC11B.1.2580.000067
ORF1ab/nsp2439T439IaCtaTt11B.1.2580.000067
ORF1ab/nsp2439T439AActGct11B.1.258.140.00098
ORF1ab/nsp2439T439SActTct11B.1.2840.013158
ORF1ab/nsp2439T439IaCtaTt11B.1.3240.001605
ORF1ab/nsp2439T439TacTacA11B.1.3320.003497
ORF1ab/nsp2439T439AActGct11B.1.3510.00003
ORF1ab/nsp2439T439NaCtaAt11B.1.351.20.000303
ORF1ab/nsp2439T439AActGct11B.1.36.80.001
ORF1ab/nsp2439T439IaCtaTt11B.1.3610.001289
ORF1ab/nsp2439T439AActGct11B.1.3960.000706
ORF1ab/nsp2439T439NaCtaAt11B.1.5030.002488
ORF1ab/nsp2439T439AActGct11B.1.5170.000427
ORF1ab/nsp2439T439delACT---11B.1.5440.006024
ORF1ab/nsp2439T439delACT---11B.1.5610.000397
ORF1ab/nsp2439T439NaCtaAt11B.1.5640.000426
ORF1ab/nsp2439T439NaCtaAt11B.1.5960.000087
ORF1ab/nsp2439T439IaCtaTt11B.1.5960.000087
ORF1ab/nsp2439T439delACT---11B.1.617.20.000004
ORF1ab/nsp2439T439IaCtaTt11B.1.6210.000089
ORF1ab/nsp2439T439NaCtaAt11B.1.6210.000089
ORF1ab/nsp2439T439IaCtaTt11B.1.6230.000536
ORF1ab/nsp2439T439TacTacC11B.1.6370.000073
ORF1ab/nsp2439T439IaCtaTt11B.350.007812
ORF1ab/nsp2439T439delACT---11B.570.015152
ORF1ab/nsp2439T439TacTacC11D.20.000075
ORF1ab/nsp2439T439PActCct11P.10.000016
ORF1ab/nsp2439T439TacTacC11P.10.000016
ORF1ab/nsp2439T439SaCtaGt11P.1.10.000318
ORF1ab/nsp2439T439IaCtaTt11P.1.120.000484
ORF1ab/nsp2439T439TacTacC11P.1.140.000048
ORF1ab/nsp2439T439IaCtaTt11P.1.20.001156
ORF1ab/nsp2439T439IaCtaTt11R.10.00009