CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 436 & Codon = atA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2436I436II616IsynatCatA79531210.01521442111-2113

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2436I436IatCatA1217953All0.000023
ORF1ab/nsp2436I436IatCatA391235AY.40.000061
ORF1ab/nsp2436I436IatCatA2762B.1.20.000018
ORF1ab/nsp2436I436IatCatA10706B.1.1.70.000009
ORF1ab/nsp2436I436IatCatA2292B.1.617.20.000008
ORF1ab/nsp2436I436IatCatA23284B.10.000211
ORF1ab/nsp2436I436IatCatA8152AY.440.000049
ORF1ab/nsp2436I436IatCatA2139AY.430.000009
ORF1ab/nsp2436I436IatCatA6107AY.1030.000037
ORF1ab/nsp2436I436IatCatA253B.1.10.000036
ORF1ab/nsp2436I436IatCatA123B.1.438.10.000107
ORF1ab/nsp2436I436IatCatA121AY.1020.000027
ORF1ab/nsp2436I436IatCatA218AY.290.000032
ORF1ab/nsp2436I436IatCatA614B.1.1.2220.001224
ORF1ab/nsp2436I436IatCatA214D.20.00015
ORF1ab/nsp2436I436IatCatA112B.1.1.5190.00004
ORF1ab/nsp2436I436IatCatA19B0.000128
ORF1ab/nsp2436I436IatCatA18AY.60.000041
ORF1ab/nsp2436I436IatCatA14AY.360.000148
ORF1ab/nsp2436I436IatCatA12A0.000387
ORF1ab/nsp2436I436IatCatA12AY.120.2.10.000498
ORF1ab/nsp2436I436IatCatA12AY.350.000233
ORF1ab/nsp2436I436IatCatA12AY.4.50.000107
ORF1ab/nsp2436I436IatCatA12AY.46.20.000635
ORF1ab/nsp2436I436IatCatA22AY.46.30.001867
ORF1ab/nsp2436I436IatCatA12AY.90.000068
ORF1ab/nsp2436I436IatCatA12B.1.258.170.000104
ORF1ab/nsp2436I436IatCatA11B.1.240.20.030303
ORF1ab/nsp2436I436IatCatA11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.