CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 431

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2431Q431RQ611RnonsyncAgcGg6536460.989282096-2098
ORF1ab/nsp2431Q431RQ611RnonsyncAGcGA65360.009188362096-2098
ORF1ab/nsp2431Q431RQ611RnonsynCAGAGA65310.001531392096-2098
ORF1ab/nsp2431Q431QQ611QsyncaGcaA64564512096-2098
ORF1ab/nsp2431Q431HQ611HnonsyncaGcaT4804750.9895832096-2098
ORF1ab/nsp2431Q431HQ611HnonsyncaGcaC48050.01041672096-2098
ORF1ab/nsp2431Q431LQ611LnonsyncAgcTg888812096-2098
ORF1ab/nsp2431Q431delQ611deldelCAG---414112096-2098
ORF1ab/nsp2431Q431KQ611KnonsynCagAag22210.9545452096-2098
ORF1ab/nsp2431Q431KQ611KnonsynCaGAaA2210.04545452096-2098
ORF1ab/nsp2431Q431PQ611PnonsyncAgcCg20180.92096-2098
ORF1ab/nsp2431Q431PQ611PnonsyncAGcCA2020.12096-2098
ORF1ab/nsp2431Q431XQ611XnonsynCagTag18130.7222222096-2098
ORF1ab/nsp2431Q431XQ611XnonsynCAGTGA1840.2222222096-2098
ORF1ab/nsp2431Q431XQ611XnonsynCaGTaA1810.05555562096-2098
ORF1ab/nsp2431Q431EQ611EnonsynCagGag320.6666672096-2098
ORF1ab/nsp2431Q431EQ611EnonsynCaGGaA310.3333332096-2098
ORF1ab/nsp2431Q431del1Q611del1delcAGcG-310.3333332096-2098
ORF1ab/nsp2431Q431del1Q611del1delCAgT-g310.3333332096-2098
ORF1ab/nsp2431Q431del1Q611del1delcAgc-g310.3333332096-2098
ORF1ab/nsp2431Q431SQ611SnonsynCAGTCA210.52096-2098
ORF1ab/nsp2431Q431AQ611AnonsynCAgGCg210.52096-2098
ORF1ab/nsp2431Q431AQ611AnonsynCAGGCA210.52096-2098
ORF1ab/nsp2431Q431SQ611SnonsynCAgTCg210.52096-2098

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2431Q431RcAgcGg646653All0.000124
ORF1ab/nsp2431Q431RcAGcGA6653All0.000001
ORF1ab/nsp2431Q431RCAGAGA1653All0
ORF1ab/nsp2431Q431QcaGcaA645645All0.000123
ORF1ab/nsp2431Q431RcAgcGg508508B.1.4970.159899
ORF1ab/nsp2431Q431HcaGcaT475480All0.000091
ORF1ab/nsp2431Q431HcaGcaC5480All0.000001
ORF1ab/nsp2431Q431HcaGcaT298298B.1.1.70.000267
ORF1ab/nsp2431Q431QcaGcaA207207B.1.617.20.000779
ORF1ab/nsp2431Q431QcaGcaA120120B.1.1.70.000107
ORF1ab/nsp2431Q431QcaGcaA9191AY.430.000403
ORF1ab/nsp2431Q431LcAgcTg8888All0.000017
ORF1ab/nsp2431Q431QcaGcaA4444B.1.20.000387
ORF1ab/nsp2431Q431delCAG---4141All0.000008
ORF1ab/nsp2431Q431LcAgcTg2525N.20.961538
ORF1ab/nsp2431Q431QcaGcaA2424B.1.1.4160.021719
ORF1ab/nsp2431Q431RcAgcGg2323AY.40.000036
ORF1ab/nsp2431Q431HcaGcaT2223B.1.617.20.000083
ORF1ab/nsp2431Q431HcaGcaC123B.1.617.20.000004
ORF1ab/nsp2431Q431KCagAag2122All0.000004
ORF1ab/nsp2431Q431KCaGAaA122All0
ORF1ab/nsp2431Q431QcaGcaA2222B.1.1.2140.00122
ORF1ab/nsp2431Q431PcAgcCg1820All0.000003
ORF1ab/nsp2431Q431PcAGcCA220All0
ORF1ab/nsp2431Q431HcaGcaT2020AY.420.000805
ORF1ab/nsp2431Q431RcAgcGg2020B.1.1.70.000018
ORF1ab/nsp2431Q431QcaGcaA1818AE.80.008802
ORF1ab/nsp2431Q431XCagTag1318All0.000002
ORF1ab/nsp2431Q431XCAGTGA418All0.000001
ORF1ab/nsp2431Q431XCaGTaA118All0
ORF1ab/nsp2431Q431LcAgcTg1717B.1.1.70.000015
ORF1ab/nsp2431Q431RcAgcGg1617B.1.617.20.00006
ORF1ab/nsp2431Q431RcAGcGA117B.1.617.20.000004
ORF1ab/nsp2431Q431QcaGcaA1616B.1.1.4340.005577
ORF1ab/nsp2431Q431RcAgcGg1313AY.1020.000345
ORF1ab/nsp2431Q431HcaGcaT1212AY.30.000119
ORF1ab/nsp2431Q431HcaGcaT1212AY.430.000053
ORF1ab/nsp2431Q431HcaGcaT1212B.1.360.001751
ORF1ab/nsp2431Q431HcaGcaT1111AY.40.000017
ORF1ab/nsp2431Q431QcaGcaA1111B.1.177.210.000841
ORF1ab/nsp2431Q431QcaGcaA1010AY.440.000061
ORF1ab/nsp2431Q431HcaGcaT88AY.260.000226
ORF1ab/nsp2431Q431QcaGcaA88AY.40.000012
ORF1ab/nsp2431Q431RcAgcGg88B.1.20.00007
ORF1ab/nsp2431Q431QcaGcaA77AY.390.000173
ORF1ab/nsp2431Q431HcaGcaT77AY.690.001307
ORF1ab/nsp2431Q431HcaGcaT66AY.1020.000159
ORF1ab/nsp2431Q431LcAgcTg66AY.250.000036
ORF1ab/nsp2431Q431HcaGcaT66AY.9.20.00022
ORF1ab/nsp2431Q431RcAgcGg66B.10.000055
ORF1ab/nsp2431Q431HcaGcaT56B.1.10.000091
ORF1ab/nsp2431Q431HcaGcaC16B.1.10.000018
ORF1ab/nsp2431Q431QcaGcaA55AY.1200.000186
ORF1ab/nsp2431Q431RcAgcGg35AY.440.000018
ORF1ab/nsp2431Q431RCAGAGA15AY.440.000006
ORF1ab/nsp2431Q431RcAGcGA15AY.440.000006
ORF1ab/nsp2431Q431QcaGcaA55B.10.000046
ORF1ab/nsp2431Q431QcaGcaA55B.1.6210.000443
ORF1ab/nsp2431Q431PcAGcCA240.111111
ORF1ab/nsp2431Q431PcAgcCg240.111111
ORF1ab/nsp2431Q431HcaGcaT44AY.1030.000025
ORF1ab/nsp2431Q431HcaGcaT44AY.250.000024
ORF1ab/nsp2431Q431PcAgcCg44AY.390.000099
ORF1ab/nsp2431Q431KCagAag44AY.430.000018
ORF1ab/nsp2431Q431KCagAag44AY.440.000024
ORF1ab/nsp2431Q431HcaGcaT44AY.750.000224
ORF1ab/nsp2431Q431QcaGcaA44AY.9.20.000147
ORF1ab/nsp2431Q431delCAG---44B.10.000037
ORF1ab/nsp2431Q431HcaGcaT34B.10.000027
ORF1ab/nsp2431Q431HcaGcaC14B.10.000009
ORF1ab/nsp2431Q431delCAG---44B.1.1.70.000004
ORF1ab/nsp2431Q431LcAgcTg44B.1.20.000035
ORF1ab/nsp2431Q431LcAgcTg44B.1.2430.000278
ORF1ab/nsp2431Q431LcAgcTg44C.80.017857
ORF1ab/nsp2431Q431QcaGcaA33AH.20.036145
ORF1ab/nsp2431Q431ECagGag23All0
ORF1ab/nsp2431Q431del1CAgT-g13All0
ORF1ab/nsp2431Q431del1cAgc-g13All0
ORF1ab/nsp2431Q431del1cAGcG-13All0
ORF1ab/nsp2431Q431ECaGGaA13All0
ORF1ab/nsp2431Q431QcaGcaA33AY.1020.00008
ORF1ab/nsp2431Q431HcaGcaT33AY.200.000117
ORF1ab/nsp2431Q431RcAgcGg33AY.390.000074
ORF1ab/nsp2431Q431HcaGcaT33AY.440.000018
ORF1ab/nsp2431Q431QcaGcaA33AY.5.40.00083
ORF1ab/nsp2431Q431RcAgcGg33AY.9.10.000251
ORF1ab/nsp2431Q431RcAGcGA23AY.9.20.000073
ORF1ab/nsp2431Q431RcAgcGg13AY.9.20.000037
ORF1ab/nsp2431Q431delCAG---33B.1.1.330.001263
ORF1ab/nsp2431Q431LcAgcTg33B.1.1.330.001263
ORF1ab/nsp2431Q431RcAgcGg33B.1.1770.00004
ORF1ab/nsp2431Q431HcaGcaT23B.1.20.000018
ORF1ab/nsp2431Q431HcaGcaC13B.1.20.000009
ORF1ab/nsp2431Q431RcAgcGg33P.20.00056
ORF1ab/nsp2431Q431RcAgcGg33Q.20.00184
ORF1ab/nsp2431Q431QcaGcaA220.111111
ORF1ab/nsp2431Q431XCaGTaA120.055556
ORF1ab/nsp2431Q431ECagGag120.055556
ORF1ab/nsp2431Q431XCagTag120.055556
ORF1ab/nsp2431Q431SCAgTCg120.055556
ORF1ab/nsp2431Q431SCAGTCA120.055556
ORF1ab/nsp2431Q431ACAgGCg120.055556
ORF1ab/nsp2431Q431ECaGGaA120.055556
ORF1ab/nsp2431Q431ACAGGCA120.055556
ORF1ab/nsp2431Q431ACAgGCg12All0
ORF1ab/nsp2431Q431ACAGGCA12All0
ORF1ab/nsp2431Q431SCAgTCg12All0
ORF1ab/nsp2431Q431SCAGTCA12All0
ORF1ab/nsp2431Q431RcAgcGg22AY.1030.000012
ORF1ab/nsp2431Q431QcaGcaA22AY.1170.000169
ORF1ab/nsp2431Q431RcAgcGg12AY.250.000006
ORF1ab/nsp2431Q431RcAGcGA12AY.250.000006
ORF1ab/nsp2431Q431RcAgcGg22AY.30.00002
ORF1ab/nsp2431Q431QcaGcaA22AY.320.001065
ORF1ab/nsp2431Q431PcAgcCg22AY.39.10.000079
ORF1ab/nsp2431Q431PcAgcCg22AY.40.000003
ORF1ab/nsp2431Q431delCAG---22AY.4.50.000215
ORF1ab/nsp2431Q431LcAgcTg22AY.440.000012
ORF1ab/nsp2431Q431RcAgcGg22AY.450.000243
ORF1ab/nsp2431Q431RcAgcGg22AY.50.000041
ORF1ab/nsp2431Q431PcAgcCg22AY.850.000854
ORF1ab/nsp2431Q431QcaGcaA22AY.900.001369
ORF1ab/nsp2431Q431LcAgcTg22B.10.000018
ORF1ab/nsp2431Q431XCagTag22B.10.000018
ORF1ab/nsp2431Q431QcaGcaA22B.1.10.000036
ORF1ab/nsp2431Q431RcAgcGg22B.1.10.000036
ORF1ab/nsp2431Q431QcaGcaA22B.1.1.2220.000408
ORF1ab/nsp2431Q431HcaGcaT22B.1.1.2220.000408
ORF1ab/nsp2431Q431RcAgcGg22B.1.1.3050.007722
ORF1ab/nsp2431Q431LcAgcTg22B.1.1.3170.000823
ORF1ab/nsp2431Q431QcaGcaA22B.1.1.330.000842
ORF1ab/nsp2431Q431delCAG---22B.1.1.3480.001592
ORF1ab/nsp2431Q431HcaGcaT22B.1.1.5190.000079
ORF1ab/nsp2431Q431XCAGTGA12B.1.1.70.000001
ORF1ab/nsp2431Q431XCagTag12B.1.1.70.000001
ORF1ab/nsp2431Q431LcAgcTg22B.1.110.30.001437
ORF1ab/nsp2431Q431LcAgcTg22B.1.1770.000026
ORF1ab/nsp2431Q431del1cAgc-g12B.1.20.000009
ORF1ab/nsp2431Q431del1CAgT-g12B.1.20.000009
ORF1ab/nsp2431Q431LcAgcTg22B.1.3510.000059
ORF1ab/nsp2431Q431delCAG---22B.1.4240.016129
ORF1ab/nsp2431Q431delCAG---22B.1.4290.000047
ORF1ab/nsp2431Q431HcaGcaT22B.1.5820.000981
ORF1ab/nsp2431Q431LcAgcTg22B.1.617.20.000008
ORF1ab/nsp2431Q431delCAG---22B.1.617.20.000008
ORF1ab/nsp2431Q431KCagAag22B.1.617.20.000008
ORF1ab/nsp2431Q431HcaGcaT22B.1.6230.001073
ORF1ab/nsp2431Q431QcaGcaA22B.1.6360.013423
ORF1ab/nsp2431Q431HcaGcaT22C.350.001548
ORF1ab/nsp2431Q431QcaGcaA22C.370.000232
ORF1ab/nsp2431Q431delCAG---22N.60.014184
ORF1ab/nsp2431Q431delCAG---22P.10.000032
ORF1ab/nsp2431Q431KCagAag22P.10.000032
ORF1ab/nsp2431Q431RcAgcGg22P.10.000032
ORF1ab/nsp2431Q431delCAG---22P.20.000373
ORF1ab/nsp2431Q431HcaGcaT11A0.000387
ORF1ab/nsp2431Q431RcAgcGg11AD.20.000219
ORF1ab/nsp2431Q431KCagAag11AD.20.000219
ORF1ab/nsp2431Q431HcaGcaT11AY.100.00053
ORF1ab/nsp2431Q431delCAG---11AY.1000.000046
ORF1ab/nsp2431Q431RcAgcGg11AY.1000.000046
ORF1ab/nsp2431Q431RcAgcGg11AY.1010.00049
ORF1ab/nsp2431Q431XCAGTGA11AY.1030.000006
ORF1ab/nsp2431Q431KCagAag11AY.1130.000142
ORF1ab/nsp2431Q431RcAgcGg11AY.1130.000142
ORF1ab/nsp2431Q431XCAGTGA11AY.1130.000142
ORF1ab/nsp2431Q431QcaGcaA11AY.1160.000287
ORF1ab/nsp2431Q431QcaGcaA11AY.1190.000035
ORF1ab/nsp2431Q431LcAgcTg11AY.1190.000035
ORF1ab/nsp2431Q431HcaGcaT11AY.1190.000035
ORF1ab/nsp2431Q431del1cAGcG-11AY.1190.000035
ORF1ab/nsp2431Q431QcaGcaA11AY.120.10.000321
ORF1ab/nsp2431Q431QcaGcaA11AY.1210.000135
ORF1ab/nsp2431Q431KCagAag11AY.160.00038
ORF1ab/nsp2431Q431RcAgcGg11AY.160.00038
ORF1ab/nsp2431Q431HcaGcaT11AY.160.00038
ORF1ab/nsp2431Q431RcAGcGA11AY.16.10.00047
ORF1ab/nsp2431Q431RcAgcGg11AY.230.00007
ORF1ab/nsp2431Q431HcaGcaT11AY.240.000431
ORF1ab/nsp2431Q431HcaGcaT11AY.270.000065
ORF1ab/nsp2431Q431HcaGcaT11AY.290.000016
ORF1ab/nsp2431Q431QcaGcaA11AY.290.000016
ORF1ab/nsp2431Q431delCAG---11AY.30.00001
ORF1ab/nsp2431Q431HcaGcaT11AY.3.10.000085
ORF1ab/nsp2431Q431LcAgcTg11AY.300.000396
ORF1ab/nsp2431Q431PcAgcCg11AY.300.000396
ORF1ab/nsp2431Q431HcaGcaT11AY.340.000097
ORF1ab/nsp2431Q431QcaGcaA11AY.360.000148
ORF1ab/nsp2431Q431LcAgcTg11AY.370.000316
ORF1ab/nsp2431Q431HcaGcaT11AY.39.10.00004
ORF1ab/nsp2431Q431RcAgcGg11AY.39.10.00004
ORF1ab/nsp2431Q431KCagAag11AY.40.000002
ORF1ab/nsp2431Q431LcAgcTg11AY.4.2.10.000149
ORF1ab/nsp2431Q431HcaGcaT11AY.4.40.000409
ORF1ab/nsp2431Q431RcAgcGg11AY.420.00004
ORF1ab/nsp2431Q431LcAgcTg11AY.430.000004
ORF1ab/nsp2431Q431delCAG---11AY.430.000004
ORF1ab/nsp2431Q431HcaGcaT11AY.450.000122
ORF1ab/nsp2431Q431QcaGcaA11AY.460.000104
ORF1ab/nsp2431Q431PcAgcCg11AY.470.000031
ORF1ab/nsp2431Q431QcaGcaA11AY.470.000031
ORF1ab/nsp2431Q431LcAgcTg11AY.470.000031
ORF1ab/nsp2431Q431QcaGcaA11AY.50.000021
ORF1ab/nsp2431Q431KCagAag11AY.50.000021
ORF1ab/nsp2431Q431delCAG---11AY.5.30.000337
ORF1ab/nsp2431Q431delCAG---11AY.540.000095
ORF1ab/nsp2431Q431QcaGcaA11AY.540.000095
ORF1ab/nsp2431Q431QcaGcaA11AY.610.000105
ORF1ab/nsp2431Q431XCagTag11AY.690.000187
ORF1ab/nsp2431Q431LcAgcTg11AY.700.000209
ORF1ab/nsp2431Q431QcaGcaA11AY.740.000116
ORF1ab/nsp2431Q431RcAgcGg11AY.750.000056
ORF1ab/nsp2431Q431XCagTag11AY.820.001357
ORF1ab/nsp2431Q431QcaGcaA11AY.840.000437
ORF1ab/nsp2431Q431QcaGcaA11AY.920.000287
ORF1ab/nsp2431Q431delCAG---11AY.930.000273
ORF1ab/nsp2431Q431LcAgcTg11AY.990.001049
ORF1ab/nsp2431Q431XCagTag11B0.000128
ORF1ab/nsp2431Q431KCaGAaA11B.10.000009
ORF1ab/nsp2431Q431delCAG---11B.1.10.000018
ORF1ab/nsp2431Q431KCagAag11B.1.10.000018
ORF1ab/nsp2431Q431QcaGcaA11B.1.1.1280.007092
ORF1ab/nsp2431Q431RcAgcGg11B.1.1.2140.000055
ORF1ab/nsp2431Q431LcAgcTg11B.1.1.2140.000055
ORF1ab/nsp2431Q431LcAgcTg11B.1.1.2200.001859
ORF1ab/nsp2431Q431XCagTag11B.1.1.2690.001353
ORF1ab/nsp2431Q431XCagTag11B.1.1.280.000311
ORF1ab/nsp2431Q431RcAgcGg11B.1.1.3170.000412
ORF1ab/nsp2431Q431delCAG---11B.1.1.4160.000905
ORF1ab/nsp2431Q431HcaGcaT11B.1.1.4620.008621
ORF1ab/nsp2431Q431PcAgcCg11B.1.1.70.000001
ORF1ab/nsp2431Q431KCagAag11B.1.1.70.000001
ORF1ab/nsp2431Q431ECagGag11B.1.1.70.000001
ORF1ab/nsp2431Q431HcaGcaT11B.1.1600.000031
ORF1ab/nsp2431Q431XCagTag11B.1.160.150.00495
ORF1ab/nsp2431Q431delCAG---11B.1.177.180.00116
ORF1ab/nsp2431Q431delCAG---11B.1.1790.003759
ORF1ab/nsp2431Q431delCAG---11B.1.20.000009
ORF1ab/nsp2431Q431XCAGTGA11B.1.20.000009
ORF1ab/nsp2431Q431delCAG---11B.1.2340.000132
ORF1ab/nsp2431Q431QcaGcaA11B.1.2430.00007
ORF1ab/nsp2431Q431XCagTag11B.1.243.10.022222
ORF1ab/nsp2431Q431LcAgcTg11B.1.3110.000275
ORF1ab/nsp2431Q431HcaGcaT11B.1.3510.00003
ORF1ab/nsp2431Q431QcaGcaA11B.1.360.000146
ORF1ab/nsp2431Q431RcAgcGg11B.1.36.170.000494
ORF1ab/nsp2431Q431HcaGcaC11B.1.3690.000285
ORF1ab/nsp2431Q431RcAgcGg11B.1.3690.000285
ORF1ab/nsp2431Q431KCagAag11B.1.416.10.001563
ORF1ab/nsp2431Q431RcAgcGg11B.1.4270.00005
ORF1ab/nsp2431Q431HcaGcaT11B.1.4270.00005
ORF1ab/nsp2431Q431KCagAag11B.1.5260.000024
ORF1ab/nsp2431Q431HcaGcaT11B.1.5260.000024
ORF1ab/nsp2431Q431RcAgcGg11B.1.5300.007143
ORF1ab/nsp2431Q431delCAG---11B.1.5610.000397
ORF1ab/nsp2431Q431PcAgcCg11B.1.5610.000397
ORF1ab/nsp2431Q431HcaGcaT11B.1.5740.002151
ORF1ab/nsp2431Q431QcaGcaA11B.1.5750.000303
ORF1ab/nsp2431Q431XCagTag11B.1.5820.000491
ORF1ab/nsp2431Q431HcaGcaT11B.1.6090.000479
ORF1ab/nsp2431Q431QcaGcaA11B.1.6090.000479
ORF1ab/nsp2431Q431PcAgcCg11B.1.617.20.000004
ORF1ab/nsp2431Q431RcAgcGg11B.4.10.018868
ORF1ab/nsp2431Q431delCAG---11B.570.015152
ORF1ab/nsp2431Q431QcaGcaA11C.36.30.000567
ORF1ab/nsp2431Q431HcaGcaT11C.370.000116
ORF1ab/nsp2431Q431PcAgcCg11D.20.000075
ORF1ab/nsp2431Q431XCagTag11D.20.000075
ORF1ab/nsp2431Q431RcAgcGg11D.20.000075
ORF1ab/nsp2431Q431RcAgcGg11N.90.005952
ORF1ab/nsp2431Q431HcaGcaT11P.10.000016
ORF1ab/nsp2431Q431QcaGcaA11P.10.000016
ORF1ab/nsp2431Q431HcaGcaT11Q.10.000126
ORF1ab/nsp2431Q431HcaGcaT11R.10.00009