CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 411

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp2	411	A411V	A591V	nonsyn	gCt	gTt	9641	9640	0.999896	2036-2038
ORF1ab/nsp2	411	A411V	A591V	nonsyn	gCT	gTC	9641	1	0.000103724	2036-2038
ORF1ab/nsp2	411	A411S	A591S	nonsyn	Gct	Tct	529	528	0.99811	2036-2038
ORF1ab/nsp2	411	A411S	A591S	nonsyn	GcT	TcA	529	1	0.00189036	2036-2038
ORF1ab/nsp2	411	A411A	A591A	syn	gcT	gcC	306	295	0.964052	2036-2038
ORF1ab/nsp2	411	A411A	A591A	syn	gcT	gcA	306	7	0.0228758	2036-2038
ORF1ab/nsp2	411	A411A	A591A	syn	gcT	gcG	306	4	0.0130719	2036-2038
ORF1ab/nsp2	411	A411T	A591T	nonsyn	Gct	Act	298	298	1	2036-2038
ORF1ab/nsp2	411	A411del	A591del	del	GCT	---	43	43	1	2036-2038
ORF1ab/nsp2	411	A411D	A591D	nonsyn	gCt	gAt	24	24	1	2036-2038
ORF1ab/nsp2	411	A411P	A591P	nonsyn	Gct	Cct	13	13	1	2036-2038
ORF1ab/nsp2	411	A411G	A591G	nonsyn	gCt	gGt	5	5	1	2036-2038
ORF1ab/nsp2	411	A411del1	A591del1	del	gCt	g-t	2	1	0.5	2036-2038
ORF1ab/nsp2	411	A411del1	A591del1	del	gcT	gc-	2	1	0.5	2036-2038
ORF1ab/nsp2	411	A411C	A591C	nonsyn	GCt	TGt	1	1	1	2036-2038
ORF1ab/nsp2	411	A411I	A591I	nonsyn	GCt	ATt	1	1	1	2036-2038

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp2	411	A411V	gCt	gTt	9640	9641	All	0.001844
ORF1ab/nsp2	411	A411V	gCT	gTC	1	9641	All	0
ORF1ab/nsp2	411	A411V	gCt	gTt	3399	3399	AY.44	0.020689
ORF1ab/nsp2	411	A411V	gCt	gTt	1984	1984	B.1.1.7	0.001776
ORF1ab/nsp2	411	A411V	gCt	gTt	679	679	B.1.617.2	0.002557
ORF1ab/nsp2	411	A411S	Gct	Tct	528	529	All	0.000101
ORF1ab/nsp2	411	A411S	GcT	TcA	1	529	All	0
ORF1ab/nsp2	411	A411V	gCt	gTt	510	510	AY.4	0.000794
ORF1ab/nsp2	411	A411A	gcT	gcC	295	306	All	0.000056
ORF1ab/nsp2	411	A411A	gcT	gcA	7	306	All	0.000001
ORF1ab/nsp2	411	A411A	gcT	gcG	4	306	All	0.000001
ORF1ab/nsp2	411	A411T	Gct	Act	298	298	All	0.000057
ORF1ab/nsp2	411	A411V	gCt	gTt	276	276	AY.43	0.001223
ORF1ab/nsp2	411	A411S	Gct	Tct	210	210	D.2	0.015759
ORF1ab/nsp2	411	A411V	gCt	gTt	208	208	B.1.177	0.002739
ORF1ab/nsp2	411	A411V	gCt	gTt	194	194	AV.1	0.979798
ORF1ab/nsp2	411	A411V	gCt	gTt	155	155	B.1	0.00142
ORF1ab/nsp2	411	A411V	gCt	gTt	136	136	B.1.637	0.009938
ORF1ab/nsp2	411	A411V	gCt	gTt	133	133	AY.103	0.000826
ORF1ab/nsp2	411	A411V	gCt	gTt	115	116	B.1.2	0.001013
ORF1ab/nsp2	411	A411V	gCT	gTC	1	116	B.1.2	0.000009
ORF1ab/nsp2	411	A411T	Gct	Act	114	114	B.1.1.7	0.000102
ORF1ab/nsp2	411	A411A	gcT	gcC	107	107	AY.3	0.001064
ORF1ab/nsp2	411	A411V	gCt	gTt	105	105	B.1.258	0.006987
ORF1ab/nsp2	411	A411V	gCt	gTt	95	95	AY.61	0.009954
ORF1ab/nsp2	411	A411S	Gct	Tct	80	80	B.1.3	0.209424
ORF1ab/nsp2	411	A411V	gCt	gTt	73	73	B.1.1.519	0.002899
ORF1ab/nsp2	411	A411V	gCt	gTt	64	64	AY.25	0.000385
ORF1ab/nsp2	411	A411V	gCt	gTt	61	61	B.1.177.5	0.075776
ORF1ab/nsp2	411	A411A	gcT	gcC	56	60	B.1.1.7	0.00005
ORF1ab/nsp2	411	A411A	gcT	gcG	3	60	B.1.1.7	0.000003
ORF1ab/nsp2	411	A411A	gcT	gcA	1	60	B.1.1.7	0.000001
ORF1ab/nsp2	411	A411V	gCt	gTt	58	58	B.1.1	0.001052
ORF1ab/nsp2	411	A411V	gCt	gTt	57	57	AY.3	0.000567
ORF1ab/nsp2	411	A411V	gCt	gTt	57	57	B.1.396	0.040226
ORF1ab/nsp2	411	A411V	gCt	gTt	57	57	P.1	0.000898
ORF1ab/nsp2	411	A411V	gCt	gTt	55	55	B.1.160	0.001715
ORF1ab/nsp2	411	A411S	Gct	Tct	54	54	AY.5	0.001115
ORF1ab/nsp2	411	A411V	gCt	gTt	47	47	B.1.221	0.003339
ORF1ab/nsp2	411	A411V	gCt	gTt	47	47	B.1.351	0.001397
ORF1ab/nsp2	411	A411V	gCt	gTt	45	45	B.1.177.15	0.028391
ORF1ab/nsp2	411	A411del	GCT	---	43	43	All	0.000008
ORF1ab/nsp2	411	A411V	gCt	gTt	42	42	AY.5.4	0.011621
ORF1ab/nsp2	411	A411V	gCt	gTt	41	41	B.1.1.411	0.602941
ORF1ab/nsp2	411	A411A	gcT	gcC	37	39	AY.4	0.000058
ORF1ab/nsp2	411	A411A	gcT	gcA	2	39	AY.4	0.000003
ORF1ab/nsp2	411	A411V	gCt	gTt	38	38	B.1.526	0.000893
ORF1ab/nsp2	411	A411V	gCt	gTt	34	34	AY.47	0.001058
ORF1ab/nsp2	411	A411S	Gct	Tct	32	32	B.1.1.7	0.000029
ORF1ab/nsp2	411	A411V	gCt	gTt	29	29	AY.9.2	0.001065
ORF1ab/nsp2	411	A411V	gCt	gTt	28	28	B.1.1.333	0.03014
ORF1ab/nsp2	411	A411T	Gct	Act	28	28	B.1.617.2	0.000105
ORF1ab/nsp2	411	A411V	gCt	gTt	27	27	B.1.36	0.003939
ORF1ab/nsp2	411	A411V	gCt	gTt	25	25	B.1.429	0.000588
ORF1ab/nsp2	411	A411D	gCt	gAt	24	24	All	0.000005
ORF1ab/nsp2	411	A411V	gCt	gTt	23	23	B.1.596	0.002004
ORF1ab/nsp2	411	A411V	gCt	gTt	22	22	AY.102	0.000583
ORF1ab/nsp2	411	A411S	Gct	Tct	21	21	AY.74	0.002429
ORF1ab/nsp2	411	A411V	gCt	gTt	18	18	AY.2	0.00641
ORF1ab/nsp2	411	A411V	gCt	gTt	18	18	AY.39	0.000445
ORF1ab/nsp2	411	A411S	Gct	Tct	18	18	AY.4	0.000028
ORF1ab/nsp2	411	A411T	Gct	Act	17	17	B.1.243	0.001183
ORF1ab/nsp2	411	A411V	gCt	gTt	17	17	B.1.369	0.004849
ORF1ab/nsp2	411	A411V	gCt	gTt	17	17	Q.8	0.002803
ORF1ab/nsp2	411	A411A	gcT	gcC	16	16	AY.26	0.000453
ORF1ab/nsp2	411	A411T	Gct	Act	16	16	AY.4	0.000025
ORF1ab/nsp2	411	A411S	Gct	Tct	16	16	AY.43	0.000071
ORF1ab/nsp2	411	A411T	Gct	Act	15	15	AY.119	0.00053
ORF1ab/nsp2	411	A411A	gcT	gcC	15	15	B.1.617.2	0.000056
ORF1ab/nsp2	411	A411V	gCt	gTt	14	14	AY.37	0.004425
ORF1ab/nsp2	411	A411V	gCt	gTt	14	14	AY.5	0.000289
ORF1ab/nsp2	411	A411V	gCt	gTt	14	14	B.1.234	0.001847
ORF1ab/nsp2	411	A411V	gCt	gTt	14	14	B.1.436	0.014403
ORF1ab/nsp2	411	A411P	Gct	Cct	13	13	All	0.000002
ORF1ab/nsp2	411	A411V	gCt	gTt	13	13	AY.100	0.000598
ORF1ab/nsp2	411	A411V	gCt	gTt	13	13	AY.20	0.000505
ORF1ab/nsp2	411	A411V	gCt	gTt	13	13	AY.23	0.000907
ORF1ab/nsp2	411	A411V	gCt	gTt	12	12	AY.54	0.001144
ORF1ab/nsp2	411	A411V	gCt	gTt	12	12	AY.75.1	0.002164
ORF1ab/nsp2	411	A411V	gCt	gTt	12	12	B.1.139	0.008798
ORF1ab/nsp2	411	A411V	gCt	gTt	12	12	B.1.232	0.006448
ORF1ab/nsp2	411	A411V	gCt	gTt	11	11	AY.120	0.000409
ORF1ab/nsp2	411	A411V	gCt	gTt	11	11	B.1.1.434	0.003834
ORF1ab/nsp2	411	A411S	Gct	Tct	11	11	B.1.2	0.000097
ORF1ab/nsp2	411	A411V	gCt	gTt	10	10	AY.106	0.003349
ORF1ab/nsp2	411	A411V	gCt	gTt	10	10	AY.29	0.000158
ORF1ab/nsp2	411	A411S	Gct	Tct	10	10	AY.44	0.000061
ORF1ab/nsp2	411	A411A	gcT	gcC	10	10	AY.9.2	0.000367
ORF1ab/nsp2	411	A411S	Gct	Tct	10	10	B.1.1	0.000181
ORF1ab/nsp2	411	A411V	gCt	gTt	9	9	AY.119	0.000318
ORF1ab/nsp2	411	A411T	Gct	Act	9	9	Q.4	0.004093
ORF1ab/nsp2	411	A411T	Gct	Act	8	8	AY.43	0.000035
ORF1ab/nsp2	411	A411V	gCt	gTt	8	8	AY.98.1	0.000387
ORF1ab/nsp2	411	A411S	Gct	Tct	8	8	B.1.177	0.000105
ORF1ab/nsp2	411	A411V	gCt	gTt	8	8	B.1.595	0.002088
ORF1ab/nsp2	411	A411V	gCt	gTt	8	8	B.1.609	0.003835
ORF1ab/nsp2	411	A411T	Gct	Act	7	7	AY.115	0.036458
ORF1ab/nsp2	411	A411V	gCt	gTt	7	7	AY.117	0.000592
ORF1ab/nsp2	411	A411V	gCt	gTt	7	7	AY.12	0.002212
ORF1ab/nsp2	411	A411A	gcT	gcC	7	7	AY.43	0.000031
ORF1ab/nsp2	411	A411V	gCt	gTt	7	7	AY.51	0.006364
ORF1ab/nsp2	411	A411T	Gct	Act	7	7	AY.98	0.000553
ORF1ab/nsp2	411	A411V	gCt	gTt	7	7	B.1.1.128	0.049645
ORF1ab/nsp2	411	A411V	gCt	gTt	7	7	B.1.1.288	0.01341
ORF1ab/nsp2	411	A411V	gCt	gTt	7	7	B.1.427	0.000353
ORF1ab/nsp2	411	A411T	Gct	Act	7	7	B.1.617.1	0.000903
ORF1ab/nsp2	411	A411V	gCt	gTt	7	7	C.37	0.000812
ORF1ab/nsp2	411	A411V	gCt	gTt	7	7	P.1.7	0.002235
ORF1ab/nsp2	411	A411V	gCt	gTt	6	6	AE.8	0.002934
ORF1ab/nsp2	411	A411T	Gct	Act	6	6	AY.25	0.000036
ORF1ab/nsp2	411	A411T	Gct	Act	6	6	AY.3	0.00006
ORF1ab/nsp2	411	A411V	gCt	gTt	6	6	AY.38	0.002996
ORF1ab/nsp2	411	A411V	gCt	gTt	6	6	AY.75	0.000336
ORF1ab/nsp2	411	A411V	gCt	gTt	6	6	AY.98	0.000474
ORF1ab/nsp2	411	A411D	gCt	gAt	6	6	B.1	0.000055
ORF1ab/nsp2	411	A411S	Gct	Tct	6	6	B.1	0.000055
ORF1ab/nsp2	411	A411V	gCt	gTt	6	6	B.1.1.294	0.007595
ORF1ab/nsp2	411	A411V	gCt	gTt	6	6	B.1.1.317	0.00247
ORF1ab/nsp2	411	A411V	gCt	gTt	6	6	B.1.1.70	0.002046
ORF1ab/nsp2	411	A411V	gCt	gTt	6	6	B.1.177.60	0.001311
ORF1ab/nsp2	411	A411S	Gct	Tct	6	6	B.1.526	0.000141
ORF1ab/nsp2	411	A411S	Gct	Tct	6	6	B.1.617.2	0.000023
ORF1ab/nsp2	411	A411V	gCt	gTt	6	6	Q.1	0.000758
ORF1ab/nsp2	411	A411G	gCt	gGt	5	5	All	0.000001
ORF1ab/nsp2	411	A411V	gCt	gTt	5	5	AY.113	0.000712
ORF1ab/nsp2	411	A411V	gCt	gTt	5	5	AY.26	0.000142
ORF1ab/nsp2	411	A411V	gCt	gTt	5	5	AY.71	0.002375
ORF1ab/nsp2	411	A411del	GCT	---	5	5	B.1	0.000046
ORF1ab/nsp2	411	A411V	gCt	gTt	5	5	B.1.1.306	0.002192
ORF1ab/nsp2	411	A411del	GCT	---	5	5	B.1.1.7	0.000004
ORF1ab/nsp2	411	A411V	gCt	gTt	5	5	B.1.240	0.001078
ORF1ab/nsp2	411	A411V	gCt	gTt	5	5	B.1.319	0.015244
ORF1ab/nsp2	411	A411T	Gct	Act	5	5	P.1	0.000079
ORF1ab/nsp2	411	A411A	gcT	gcA	3	4	AY.102	0.00008
ORF1ab/nsp2	411	A411A	gcT	gcC	1	4	AY.102	0.000027
ORF1ab/nsp2	411	A411V	gCt	gTt	4	4	AY.107	0.001864
ORF1ab/nsp2	411	A411V	gCt	gTt	4	4	AY.4.5	0.00043
ORF1ab/nsp2	411	A411V	gCt	gTt	4	4	AY.45	0.000487
ORF1ab/nsp2	411	A411T	Gct	Act	4	4	AY.59	0.002119
ORF1ab/nsp2	411	A411T	Gct	Act	4	4	AY.9.2	0.000147
ORF1ab/nsp2	411	A411V	gCt	gTt	4	4	B.1.1.161	0.014134
ORF1ab/nsp2	411	A411V	gCt	gTt	4	4	B.1.1.214	0.000222
ORF1ab/nsp2	411	A411V	gCt	gTt	4	4	B.1.1.57	0.045977
ORF1ab/nsp2	411	A411D	gCt	gAt	4	4	B.1.1.7	0.000004
ORF1ab/nsp2	411	A411A	gcT	gcC	4	4	B.1.177	0.000053
ORF1ab/nsp2	411	A411T	Gct	Act	4	4	B.1.2	0.000035
ORF1ab/nsp2	411	A411V	gCt	gTt	4	4	B.1.243	0.000278
ORF1ab/nsp2	411	A411V	gCt	gTt	4	4	B.1.525	0.000453
ORF1ab/nsp2	411	A411V	gCt	gTt	4	4	B.1.621	0.000354
ORF1ab/nsp2	411	A411V	gCt	gTt	3	3	A.23.1	0.002113
ORF1ab/nsp2	411	A411V	gCt	gTt	3	3	AS.1	0.028571
ORF1ab/nsp2	411	A411A	gcT	gcC	3	3	AY.103	0.000019
ORF1ab/nsp2	411	A411V	gCt	gTt	3	3	AY.118	0.000188
ORF1ab/nsp2	411	A411V	gCt	gTt	3	3	AY.120.2	0.003856
ORF1ab/nsp2	411	A411S	Gct	Tct	3	3	AY.20	0.000117
ORF1ab/nsp2	411	A411A	gcT	gcC	3	3	AY.25	0.000018
ORF1ab/nsp2	411	A411A	gcT	gcC	3	3	AY.29	0.000047
ORF1ab/nsp2	411	A411T	Gct	Act	3	3	AY.39	0.000074
ORF1ab/nsp2	411	A411V	gCt	gTt	3	3	AY.4.1	0.002212
ORF1ab/nsp2	411	A411A	gcT	gcC	3	3	AY.4.2	0.000065
ORF1ab/nsp2	411	A411V	gCt	gTt	3	3	AY.4.2	0.000065
ORF1ab/nsp2	411	A411V	gCt	gTt	3	3	AY.41	0.000882
ORF1ab/nsp2	411	A411V	gCt	gTt	3	3	AY.42	0.000121
ORF1ab/nsp2	411	A411V	gCt	gTt	3	3	AY.62	0.001307
ORF1ab/nsp2	411	A411T	Gct	Act	3	3	AY.9.1	0.000251
ORF1ab/nsp2	411	A411V	gCt	gTt	3	3	AY.9.1	0.000251
ORF1ab/nsp2	411	A411V	gCt	gTt	3	3	B.1.1.222	0.000612
ORF1ab/nsp2	411	A411V	gCt	gTt	3	3	B.1.1.284	0.000322
ORF1ab/nsp2	411	A411del	GCT	---	3	3	B.1.1.33	0.001263
ORF1ab/nsp2	411	A411V	gCt	gTt	3	3	B.1.1.37	0.000579
ORF1ab/nsp2	411	A411G	gCt	gGt	3	3	B.1.1.7	0.000003
ORF1ab/nsp2	411	A411V	gCt	gTt	3	3	B.1.126	0.003827
ORF1ab/nsp2	411	A411T	Gct	Act	3	3	B.1.177.7	0.000495
ORF1ab/nsp2	411	A411A	gcT	gcC	3	3	B.1.2	0.000026
ORF1ab/nsp2	411	A411V	gCt	gTt	3	3	B.1.362	0.004622
ORF1ab/nsp2	411	A411V	gCt	gTt	3	3	B.1.416	0.003807
ORF1ab/nsp2	411	A411V	gCt	gTt	3	3	B.1.466.2	0.001174
ORF1ab/nsp2	411	A411S	Gct	Tct	3	3	B.4.5	0.035714
ORF1ab/nsp2	411	A411A	gcT	gcC	3	3	P.1	0.000047
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	A.3	0.004193
ORF1ab/nsp2	411	A411del1	gCt	g-t	1	2	All	0
ORF1ab/nsp2	411	A411del1	gcT	gc-	1	2	All	0
ORF1ab/nsp2	411	A411T	Gct	Act	2	2	AY.102	0.000053
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	AY.110	0.000225
ORF1ab/nsp2	411	A411D	gCt	gAt	2	2	AY.118	0.000125
ORF1ab/nsp2	411	A411T	Gct	Act	2	2	AY.120.1	0.000642
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	AY.13	0.000322
ORF1ab/nsp2	411	A411A	gcT	gcC	2	2	AY.16	0.000759
ORF1ab/nsp2	411	A411T	Gct	Act	2	2	AY.20	0.000078
ORF1ab/nsp2	411	A411S	Gct	Tct	2	2	AY.25	0.000012
ORF1ab/nsp2	411	A411D	gCt	gAt	2	2	AY.29	0.000032
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	AY.3.1	0.000171
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	AY.33	0.000134
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	AY.36	0.000296
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	AY.39.1	0.000079
ORF1ab/nsp2	411	A411del	GCT	---	2	2	AY.4	0.000003
ORF1ab/nsp2	411	A411A	gcT	gcC	2	2	AY.40	0.001929
ORF1ab/nsp2	411	A411S	Gct	Tct	2	2	AY.42	0.00008
ORF1ab/nsp2	411	A411A	gcT	gcC	2	2	AY.44	0.000012
ORF1ab/nsp2	411	A411T	Gct	Act	2	2	AY.44	0.000012
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	AY.46	0.000208
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	AY.46.4	0.000329
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	AY.46.5	0.000397
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	AY.46.6	0.000144
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	AY.7	0.000392
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	AY.80	0.002257
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	AY.84	0.000875
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	AY.85	0.000854
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	AY.88	0.001768
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	AY.92	0.000575
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	AY.99.1	0.003106
ORF1ab/nsp2	411	A411S	Gct	Tct	2	2	B	0.000256
ORF1ab/nsp2	411	A411P	Gct	Cct	2	2	B.1	0.000018
ORF1ab/nsp2	411	A411T	Gct	Act	2	2	B.1	0.000018
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.1.170	0.002494
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.1.198	0.002937
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.1.312	0.003824
ORF1ab/nsp2	411	A411del	GCT	---	2	2	B.1.1.348	0.001592
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.1.363	0.011976
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.1.368	0.006173
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.1.409	0.005666
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.1.464	0.002946
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.1.526	0.007092
ORF1ab/nsp2	411	A411P	Gct	Cct	2	2	B.1.1.7	0.000002
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.160.30	0.005952
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.177.6	0.001953
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.177.81	0.000379
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.177.82	0.000955
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.177.86	0.000367
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.177.9	0.002663
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.206	0.001631
ORF1ab/nsp2	411	A411S	Gct	Tct	2	2	B.1.243	0.000139
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.311	0.000549
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.330	0.057143
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.36.27	0.001527
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.36.29	0.001035
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.375	0.001639
ORF1ab/nsp2	411	A411del	GCT	---	2	2	B.1.424	0.016129
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.459	0.008163
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.507	0.022472
ORF1ab/nsp2	411	A411T	Gct	Act	2	2	B.1.526	0.000047
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.574	0.004301
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.577	0.001375
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.600	0.011696
ORF1ab/nsp2	411	A411D	gCt	gAt	2	2	B.1.601	0.060606
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.1.617.1	0.000258
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	B.40	0.000729
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	C.36	0.001821
ORF1ab/nsp2	411	A411del	GCT	---	2	2	N.6	0.014184
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	P.1.13	0.001797
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	P.1.14	0.000096
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	P.1.2	0.002312
ORF1ab/nsp2	411	A411del	GCT	---	2	2	P.2	0.000373
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	Q.2	0.001227
ORF1ab/nsp2	411	A411V	gCt	gTt	2	2	Q.3	0.00029
ORF1ab/nsp2	411	A411A	gcT	gcA	1	1	A	0.000387
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	A	0.000387
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	A.1	0.000282
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	A.2	0.000662
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	A.23	0.010526
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	A.27	0.001656
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	AD.2	0.000219
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	AL.1	0.012987
ORF1ab/nsp2	411	A411C	GCt	TGt	1	1	All	0
ORF1ab/nsp2	411	A411I	GCt	ATt	1	1	All	0
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	AT.1	0.005128
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	AY.1	0.000396
ORF1ab/nsp2	411	A411del	GCT	---	1	1	AY.100	0.000046
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	AY.101	0.00049
ORF1ab/nsp2	411	A411S	GcT	TcA	1	1	AY.103	0.000006
ORF1ab/nsp2	411	A411T	Gct	Act	1	1	AY.103	0.000006
ORF1ab/nsp2	411	A411del	GCT	---	1	1	AY.103	0.000006
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	AY.104	0.001984
ORF1ab/nsp2	411	A411T	Gct	Act	1	1	AY.106	0.000335
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	AY.111	0.000183
ORF1ab/nsp2	411	A411T	Gct	Act	1	1	AY.111	0.000183
ORF1ab/nsp2	411	A411del	GCT	---	1	1	AY.113	0.000142
ORF1ab/nsp2	411	A411T	Gct	Act	1	1	AY.116	0.000287
ORF1ab/nsp2	411	A411A	gcT	gcC	1	1	AY.119	0.000035
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	AY.120.2.1	0.000498
ORF1ab/nsp2	411	A411A	gcT	gcC	1	1	AY.121	0.000135
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	AY.16	0.00038
ORF1ab/nsp2	411	A411del	GCT	---	1	1	AY.16.1	0.00047
ORF1ab/nsp2	411	A411A	gcT	gcC	1	1	AY.20	0.000039
ORF1ab/nsp2	411	A411A	gcT	gcC	1	1	AY.23	0.00007
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	AY.23.1	0.000417
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	AY.29.1	0.000221
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	AY.3	0.00001
ORF1ab/nsp2	411	A411G	gCt	gGt	1	1	AY.3	0.00001
ORF1ab/nsp2	411	A411C	GCt	TGt	1	1	AY.3	0.00001
ORF1ab/nsp2	411	A411del	GCT	---	1	1	AY.3	0.00001
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	AY.30	0.000396
ORF1ab/nsp2	411	A411T	Gct	Act	1	1	AY.34	0.000097
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	AY.34	0.000097
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	AY.35	0.000233
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	AY.39	0.000025
ORF1ab/nsp2	411	A411T	Gct	Act	1	1	AY.39.1	0.00004
ORF1ab/nsp2	411	A411del	GCT	---	1	1	AY.4.5	0.000107
ORF1ab/nsp2	411	A411T	Gct	Act	1	1	AY.42	0.00004
ORF1ab/nsp2	411	A411del1	gCt	g-t	1	1	AY.44	0.000006
ORF1ab/nsp2	411	A411D	gCt	gAt	1	1	AY.44	0.000006
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	AY.47	0.000031
ORF1ab/nsp2	411	A411T	Gct	Act	1	1	AY.47	0.000031
ORF1ab/nsp2	411	A411A	gcT	gcC	1	1	AY.47	0.000031
ORF1ab/nsp2	411	A411del	GCT	---	1	1	AY.54	0.000095
ORF1ab/nsp2	411	A411T	Gct	Act	1	1	AY.54	0.000095
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	AY.56	0.001605
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	AY.59	0.00053
ORF1ab/nsp2	411	A411A	gcT	gcC	1	1	AY.6	0.000041
ORF1ab/nsp2	411	A411A	gcT	gcC	1	1	AY.65	0.000533
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	AY.69	0.000187
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	AY.7.1	0.000113
ORF1ab/nsp2	411	A411T	Gct	Act	1	1	AY.7.1	0.000113
ORF1ab/nsp2	411	A411T	Gct	Act	1	1	AY.75	0.000056
ORF1ab/nsp2	411	A411A	gcT	gcC	1	1	AY.9	0.000068
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	AY.9	0.000068
ORF1ab/nsp2	411	A411del	GCT	---	1	1	AY.9.2	0.000037
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	AY.93	0.000273
ORF1ab/nsp2	411	A411del	GCT	---	1	1	AY.93	0.000273
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	AY.95	0.000761
ORF1ab/nsp2	411	A411T	Gct	Act	1	1	AY.98.1	0.000048
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	AY.99.2	0.000092
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B	0.000128
ORF1ab/nsp2	411	A411T	Gct	Act	1	1	B	0.000128
ORF1ab/nsp2	411	A411A	gcT	gcC	1	1	B.1	0.000009
ORF1ab/nsp2	411	A411del	GCT	---	1	1	B.1.1	0.000018
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.1	0.000327
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.10	0.001115
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.141	0.002012
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	B.1.1.148	0.008772
ORF1ab/nsp2	411	A411D	gCt	gAt	1	1	B.1.1.164	0.005155
ORF1ab/nsp2	411	A411P	Gct	Cct	1	1	B.1.1.169	0.018182
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.176	0.000439
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.186	0.003436
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.204	0.00304
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.217	0.003636
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.25	0.000569
ORF1ab/nsp2	411	A411A	gcT	gcC	1	1	B.1.1.25	0.000569
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.257	0.009709
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.273	0.006757
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.277	0.000759
ORF1ab/nsp2	411	A411T	Gct	Act	1	1	B.1.1.279	0.001121
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.28	0.000311
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.31	0.066667
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.311	0.000358
ORF1ab/nsp2	411	A411D	gCt	gAt	1	1	B.1.1.318	0.000302
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.318	0.000302
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.33	0.000421
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.348	0.000796
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.369	0.000446
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.377	0.001381
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.39	0.00051
ORF1ab/nsp2	411	A411del	GCT	---	1	1	B.1.1.416	0.000905
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.432	0.001266
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.50	0.000679
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.51	0.001718
ORF1ab/nsp2	411	A411A	gcT	gcC	1	1	B.1.1.519	0.00004
ORF1ab/nsp2	411	A411P	Gct	Cct	1	1	B.1.1.526	0.003546
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.1.63	0.000386
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.110.3	0.000718
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.111	0.001175
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.124	0.007812
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.147	0.000756
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	B.1.157	0.002985
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	B.1.160	0.000031
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.160.14	0.002119
ORF1ab/nsp2	411	A411A	gcT	gcC	1	1	B.1.160.15	0.00495
ORF1ab/nsp2	411	A411A	gcT	gcG	1	1	B.1.160.9	0.007194
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.177.16	0.000664
ORF1ab/nsp2	411	A411del	GCT	---	1	1	B.1.177.18	0.00116
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.177.21	0.000076
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.177.26	0.006993
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.177.33	0.001645
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.177.35	0.000691
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.177.4	0.000211
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.177.44	0.000519
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.177.53	0.002392
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	B.1.177.54	0.000606
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.177.77	0.000726
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	B.1.177.81	0.000189
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	B.1.177.83	0.001481
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.177.87	0.000728
ORF1ab/nsp2	411	A411del	GCT	---	1	1	B.1.179	0.003759
ORF1ab/nsp2	411	A411I	GCt	ATt	1	1	B.1.2	0.000009
ORF1ab/nsp2	411	A411P	Gct	Cct	1	1	B.1.2	0.000009
ORF1ab/nsp2	411	A411del1	gcT	gc-	1	1	B.1.2	0.000009
ORF1ab/nsp2	411	A411D	gCt	gAt	1	1	B.1.2	0.000009
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	B.1.221	0.000071
ORF1ab/nsp2	411	A411del	GCT	---	1	1	B.1.234	0.000132
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.239	0.001221
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.241	0.000812
ORF1ab/nsp2	411	A411A	gcT	gcC	1	1	B.1.243	0.00007
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	B.1.258	0.000067
ORF1ab/nsp2	411	A411P	Gct	Cct	1	1	B.1.258.11	0.000396
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	B.1.258.17	0.000104
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	B.1.260	0.003344
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.265	0.001271
ORF1ab/nsp2	411	A411A	gcT	gcC	1	1	B.1.274	0.011905
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.291	0.019231
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.324	0.001605
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.329	0.000608
ORF1ab/nsp2	411	A411A	gcT	gcC	1	1	B.1.36	0.000146
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.36.16	0.001425
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.36.31	0.001751
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.36.36	0.000602
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.36.38	0.001642
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.361	0.001289
ORF1ab/nsp2	411	A411T	Gct	Act	1	1	B.1.362	0.001541
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.366	0.004878
ORF1ab/nsp2	411	A411T	Gct	Act	1	1	B.1.366	0.004878
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.367	0.000792
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	B.1.367	0.000792
ORF1ab/nsp2	411	A411T	Gct	Act	1	1	B.1.369	0.000285
ORF1ab/nsp2	411	A411A	gcT	gcC	1	1	B.1.369	0.000285
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.370	0.008
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.380	0.006623
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.391	0.001127
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.400	0.000429
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.404	0.001302
ORF1ab/nsp2	411	A411A	gcT	gcC	1	1	B.1.416.1	0.001563
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.416.1	0.001563
ORF1ab/nsp2	411	A411G	gCt	gGt	1	1	B.1.427	0.00005
ORF1ab/nsp2	411	A411T	Gct	Act	1	1	B.1.429	0.000024
ORF1ab/nsp2	411	A411del	GCT	---	1	1	B.1.429	0.000024
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	B.1.434	0.052632
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.438.1	0.000107
ORF1ab/nsp2	411	A411D	gCt	gAt	1	1	B.1.453	0.003236
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.456	0.003268
ORF1ab/nsp2	411	A411P	Gct	Cct	1	1	B.1.459	0.004082
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.468	0.005714
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.499	0.00105
ORF1ab/nsp2	411	A411D	gCt	gAt	1	1	B.1.517	0.000427
ORF1ab/nsp2	411	A411A	gcT	gcC	1	1	B.1.525	0.000113
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.546	0.003704
ORF1ab/nsp2	411	A411del	GCT	---	1	1	B.1.561	0.000397
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.564	0.000426
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.588	0.00091
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.590	0.004545
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	B.1.595	0.000261
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	B.1.596	0.000087
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.612	0.002653
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	B.1.617.1	0.000129
ORF1ab/nsp2	411	A411D	gCt	gAt	1	1	B.1.617.1	0.000129
ORF1ab/nsp2	411	A411del	GCT	---	1	1	B.1.617.2	0.000004
ORF1ab/nsp2	411	A411D	gCt	gAt	1	1	B.1.617.2	0.000004
ORF1ab/nsp2	411	A411P	Gct	Cct	1	1	B.1.617.2	0.000004
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.1.617.3	0.002985
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	B.1.76	0.011364
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	B.29	0.003509
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	B.35	0.007812
ORF1ab/nsp2	411	A411P	Gct	Cct	1	1	B.4	0.002208
ORF1ab/nsp2	411	A411P	Gct	Cct	1	1	B.4.5	0.011905
ORF1ab/nsp2	411	A411del	GCT	---	1	1	B.57	0.015152
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	B.6	0.00091
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	B.6	0.00091
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	C.36.3	0.000567
ORF1ab/nsp2	411	A411T	Gct	Act	1	1	D.2	0.000075
ORF1ab/nsp2	411	A411P	Gct	Cct	1	1	D.2	0.000075
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	D.3	0.005917
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	N.4	0.004255
ORF1ab/nsp2	411	A411del	GCT	---	1	1	P.1	0.000016
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	P.1.10	0.000269
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	P.1.12	0.000484
ORF1ab/nsp2	411	A411S	Gct	Tct	1	1	P.1.14	0.000048
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	P.1.15	0.000232
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	P.2	0.000187
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	P.6	0.003145
ORF1ab/nsp2	411	A411del	GCT	---	1	1	Q.1	0.000126
ORF1ab/nsp2	411	A411T	Gct	Act	1	1	Q.1	0.000126
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	Q.4	0.000455
ORF1ab/nsp2	411	A411V	gCt	gTt	1	1	U.3	0.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.