CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 411

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2411A411VA591VnonsyngCtgTt964196400.9998962036-2038
ORF1ab/nsp2411A411VA591VnonsyngCTgTC964110.0001037242036-2038
ORF1ab/nsp2411A411SA591SnonsynGctTct5295280.998112036-2038
ORF1ab/nsp2411A411SA591SnonsynGcTTcA52910.001890362036-2038
ORF1ab/nsp2411A411AA591AsyngcTgcC3062950.9640522036-2038
ORF1ab/nsp2411A411AA591AsyngcTgcA30670.02287582036-2038
ORF1ab/nsp2411A411AA591AsyngcTgcG30640.01307192036-2038
ORF1ab/nsp2411A411TA591TnonsynGctAct29829812036-2038
ORF1ab/nsp2411A411delA591deldelGCT---434312036-2038
ORF1ab/nsp2411A411DA591DnonsyngCtgAt242412036-2038
ORF1ab/nsp2411A411PA591PnonsynGctCct131312036-2038
ORF1ab/nsp2411A411GA591GnonsyngCtgGt5512036-2038
ORF1ab/nsp2411A411del1A591del1delgCtg-t210.52036-2038
ORF1ab/nsp2411A411del1A591del1delgcTgc-210.52036-2038
ORF1ab/nsp2411A411CA591CnonsynGCtTGt1112036-2038
ORF1ab/nsp2411A411IA591InonsynGCtATt1112036-2038

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2411A411VgCtgTt96409641All0.001844
ORF1ab/nsp2411A411VgCTgTC19641All0
ORF1ab/nsp2411A411VgCtgTt33993399AY.440.020689
ORF1ab/nsp2411A411VgCtgTt19841984B.1.1.70.001776
ORF1ab/nsp2411A411VgCtgTt679679B.1.617.20.002557
ORF1ab/nsp2411A411SGctTct528529All0.000101
ORF1ab/nsp2411A411SGcTTcA1529All0
ORF1ab/nsp2411A411VgCtgTt510510AY.40.000794
ORF1ab/nsp2411A411AgcTgcC295306All0.000056
ORF1ab/nsp2411A411AgcTgcA7306All0.000001
ORF1ab/nsp2411A411AgcTgcG4306All0.000001
ORF1ab/nsp2411A411TGctAct298298All0.000057
ORF1ab/nsp2411A411VgCtgTt276276AY.430.001223
ORF1ab/nsp2411A411SGctTct210210D.20.015759
ORF1ab/nsp2411A411VgCtgTt208208B.1.1770.002739
ORF1ab/nsp2411A411VgCtgTt194194AV.10.979798
ORF1ab/nsp2411A411VgCtgTt155155B.10.00142
ORF1ab/nsp2411A411VgCtgTt136136B.1.6370.009938
ORF1ab/nsp2411A411VgCtgTt133133AY.1030.000826
ORF1ab/nsp2411A411VgCtgTt115116B.1.20.001013
ORF1ab/nsp2411A411VgCTgTC1116B.1.20.000009
ORF1ab/nsp2411A411TGctAct114114B.1.1.70.000102
ORF1ab/nsp2411A411AgcTgcC107107AY.30.001064
ORF1ab/nsp2411A411VgCtgTt105105B.1.2580.006987
ORF1ab/nsp2411A411VgCtgTt9595AY.610.009954
ORF1ab/nsp2411A411SGctTct8080B.1.30.209424
ORF1ab/nsp2411A411VgCtgTt7373B.1.1.5190.002899
ORF1ab/nsp2411A411VgCtgTt6464AY.250.000385
ORF1ab/nsp2411A411VgCtgTt6161B.1.177.50.075776
ORF1ab/nsp2411A411AgcTgcC5660B.1.1.70.00005
ORF1ab/nsp2411A411AgcTgcG360B.1.1.70.000003
ORF1ab/nsp2411A411AgcTgcA160B.1.1.70.000001
ORF1ab/nsp2411A411VgCtgTt5858B.1.10.001052
ORF1ab/nsp2411A411VgCtgTt5757AY.30.000567
ORF1ab/nsp2411A411VgCtgTt5757B.1.3960.040226
ORF1ab/nsp2411A411VgCtgTt5757P.10.000898
ORF1ab/nsp2411A411VgCtgTt5555B.1.1600.001715
ORF1ab/nsp2411A411SGctTct5454AY.50.001115
ORF1ab/nsp2411A411VgCtgTt4747B.1.2210.003339
ORF1ab/nsp2411A411VgCtgTt4747B.1.3510.001397
ORF1ab/nsp2411A411VgCtgTt4545B.1.177.150.028391
ORF1ab/nsp2411A411delGCT---4343All0.000008
ORF1ab/nsp2411A411VgCtgTt4242AY.5.40.011621
ORF1ab/nsp2411A411VgCtgTt4141B.1.1.4110.602941
ORF1ab/nsp2411A411AgcTgcC3739AY.40.000058
ORF1ab/nsp2411A411AgcTgcA239AY.40.000003
ORF1ab/nsp2411A411VgCtgTt3838B.1.5260.000893
ORF1ab/nsp2411A411VgCtgTt3434AY.470.001058
ORF1ab/nsp2411A411SGctTct3232B.1.1.70.000029
ORF1ab/nsp2411A411VgCtgTt2929AY.9.20.001065
ORF1ab/nsp2411A411VgCtgTt2828B.1.1.3330.03014
ORF1ab/nsp2411A411TGctAct2828B.1.617.20.000105
ORF1ab/nsp2411A411VgCtgTt2727B.1.360.003939
ORF1ab/nsp2411A411VgCtgTt2525B.1.4290.000588
ORF1ab/nsp2411A411DgCtgAt2424All0.000005
ORF1ab/nsp2411A411VgCtgTt2323B.1.5960.002004
ORF1ab/nsp2411A411VgCtgTt2222AY.1020.000583
ORF1ab/nsp2411A411SGctTct2121AY.740.002429
ORF1ab/nsp2411A411VgCtgTt1818AY.20.00641
ORF1ab/nsp2411A411VgCtgTt1818AY.390.000445
ORF1ab/nsp2411A411SGctTct1818AY.40.000028
ORF1ab/nsp2411A411TGctAct1717B.1.2430.001183
ORF1ab/nsp2411A411VgCtgTt1717B.1.3690.004849
ORF1ab/nsp2411A411VgCtgTt1717Q.80.002803
ORF1ab/nsp2411A411AgcTgcC1616AY.260.000453
ORF1ab/nsp2411A411TGctAct1616AY.40.000025
ORF1ab/nsp2411A411SGctTct1616AY.430.000071
ORF1ab/nsp2411A411TGctAct1515AY.1190.00053
ORF1ab/nsp2411A411AgcTgcC1515B.1.617.20.000056
ORF1ab/nsp2411A411VgCtgTt1414AY.370.004425
ORF1ab/nsp2411A411VgCtgTt1414AY.50.000289
ORF1ab/nsp2411A411VgCtgTt1414B.1.2340.001847
ORF1ab/nsp2411A411VgCtgTt1414B.1.4360.014403
ORF1ab/nsp2411A411PGctCct1313All0.000002
ORF1ab/nsp2411A411VgCtgTt1313AY.1000.000598
ORF1ab/nsp2411A411VgCtgTt1313AY.200.000505
ORF1ab/nsp2411A411VgCtgTt1313AY.230.000907
ORF1ab/nsp2411A411VgCtgTt1212AY.540.001144
ORF1ab/nsp2411A411VgCtgTt1212AY.75.10.002164
ORF1ab/nsp2411A411VgCtgTt1212B.1.1390.008798
ORF1ab/nsp2411A411VgCtgTt1212B.1.2320.006448
ORF1ab/nsp2411A411VgCtgTt1111AY.1200.000409
ORF1ab/nsp2411A411VgCtgTt1111B.1.1.4340.003834
ORF1ab/nsp2411A411SGctTct1111B.1.20.000097
ORF1ab/nsp2411A411VgCtgTt1010AY.1060.003349
ORF1ab/nsp2411A411VgCtgTt1010AY.290.000158
ORF1ab/nsp2411A411SGctTct1010AY.440.000061
ORF1ab/nsp2411A411AgcTgcC1010AY.9.20.000367
ORF1ab/nsp2411A411SGctTct1010B.1.10.000181
ORF1ab/nsp2411A411VgCtgTt99AY.1190.000318
ORF1ab/nsp2411A411TGctAct99Q.40.004093
ORF1ab/nsp2411A411TGctAct88AY.430.000035
ORF1ab/nsp2411A411VgCtgTt88AY.98.10.000387
ORF1ab/nsp2411A411SGctTct88B.1.1770.000105
ORF1ab/nsp2411A411VgCtgTt88B.1.5950.002088
ORF1ab/nsp2411A411VgCtgTt88B.1.6090.003835
ORF1ab/nsp2411A411TGctAct77AY.1150.036458
ORF1ab/nsp2411A411VgCtgTt77AY.1170.000592
ORF1ab/nsp2411A411VgCtgTt77AY.120.002212
ORF1ab/nsp2411A411AgcTgcC77AY.430.000031
ORF1ab/nsp2411A411VgCtgTt77AY.510.006364
ORF1ab/nsp2411A411TGctAct77AY.980.000553
ORF1ab/nsp2411A411VgCtgTt77B.1.1.1280.049645
ORF1ab/nsp2411A411VgCtgTt77B.1.1.2880.01341
ORF1ab/nsp2411A411VgCtgTt77B.1.4270.000353
ORF1ab/nsp2411A411TGctAct77B.1.617.10.000903
ORF1ab/nsp2411A411VgCtgTt77C.370.000812
ORF1ab/nsp2411A411VgCtgTt77P.1.70.002235
ORF1ab/nsp2411A411VgCtgTt66AE.80.002934
ORF1ab/nsp2411A411TGctAct66AY.250.000036
ORF1ab/nsp2411A411TGctAct66AY.30.00006
ORF1ab/nsp2411A411VgCtgTt66AY.380.002996
ORF1ab/nsp2411A411VgCtgTt66AY.750.000336
ORF1ab/nsp2411A411VgCtgTt66AY.980.000474
ORF1ab/nsp2411A411DgCtgAt66B.10.000055
ORF1ab/nsp2411A411SGctTct66B.10.000055
ORF1ab/nsp2411A411VgCtgTt66B.1.1.2940.007595
ORF1ab/nsp2411A411VgCtgTt66B.1.1.3170.00247
ORF1ab/nsp2411A411VgCtgTt66B.1.1.700.002046
ORF1ab/nsp2411A411VgCtgTt66B.1.177.600.001311
ORF1ab/nsp2411A411SGctTct66B.1.5260.000141
ORF1ab/nsp2411A411SGctTct66B.1.617.20.000023
ORF1ab/nsp2411A411VgCtgTt66Q.10.000758
ORF1ab/nsp2411A411GgCtgGt55All0.000001
ORF1ab/nsp2411A411VgCtgTt55AY.1130.000712
ORF1ab/nsp2411A411VgCtgTt55AY.260.000142
ORF1ab/nsp2411A411VgCtgTt55AY.710.002375
ORF1ab/nsp2411A411delGCT---55B.10.000046
ORF1ab/nsp2411A411VgCtgTt55B.1.1.3060.002192
ORF1ab/nsp2411A411delGCT---55B.1.1.70.000004
ORF1ab/nsp2411A411VgCtgTt55B.1.2400.001078
ORF1ab/nsp2411A411VgCtgTt55B.1.3190.015244
ORF1ab/nsp2411A411TGctAct55P.10.000079
ORF1ab/nsp2411A411AgcTgcA34AY.1020.00008
ORF1ab/nsp2411A411AgcTgcC14AY.1020.000027
ORF1ab/nsp2411A411VgCtgTt44AY.1070.001864
ORF1ab/nsp2411A411VgCtgTt44AY.4.50.00043
ORF1ab/nsp2411A411VgCtgTt44AY.450.000487
ORF1ab/nsp2411A411TGctAct44AY.590.002119
ORF1ab/nsp2411A411TGctAct44AY.9.20.000147
ORF1ab/nsp2411A411VgCtgTt44B.1.1.1610.014134
ORF1ab/nsp2411A411VgCtgTt44B.1.1.2140.000222
ORF1ab/nsp2411A411VgCtgTt44B.1.1.570.045977
ORF1ab/nsp2411A411DgCtgAt44B.1.1.70.000004
ORF1ab/nsp2411A411AgcTgcC44B.1.1770.000053
ORF1ab/nsp2411A411TGctAct44B.1.20.000035
ORF1ab/nsp2411A411VgCtgTt44B.1.2430.000278
ORF1ab/nsp2411A411VgCtgTt44B.1.5250.000453
ORF1ab/nsp2411A411VgCtgTt44B.1.6210.000354
ORF1ab/nsp2411A411VgCtgTt33A.23.10.002113
ORF1ab/nsp2411A411VgCtgTt33AS.10.028571
ORF1ab/nsp2411A411AgcTgcC33AY.1030.000019
ORF1ab/nsp2411A411VgCtgTt33AY.1180.000188
ORF1ab/nsp2411A411VgCtgTt33AY.120.20.003856
ORF1ab/nsp2411A411SGctTct33AY.200.000117
ORF1ab/nsp2411A411AgcTgcC33AY.250.000018
ORF1ab/nsp2411A411AgcTgcC33AY.290.000047
ORF1ab/nsp2411A411TGctAct33AY.390.000074
ORF1ab/nsp2411A411VgCtgTt33AY.4.10.002212
ORF1ab/nsp2411A411AgcTgcC33AY.4.20.000065
ORF1ab/nsp2411A411VgCtgTt33AY.4.20.000065
ORF1ab/nsp2411A411VgCtgTt33AY.410.000882
ORF1ab/nsp2411A411VgCtgTt33AY.420.000121
ORF1ab/nsp2411A411VgCtgTt33AY.620.001307
ORF1ab/nsp2411A411TGctAct33AY.9.10.000251
ORF1ab/nsp2411A411VgCtgTt33AY.9.10.000251
ORF1ab/nsp2411A411VgCtgTt33B.1.1.2220.000612
ORF1ab/nsp2411A411VgCtgTt33B.1.1.2840.000322
ORF1ab/nsp2411A411delGCT---33B.1.1.330.001263
ORF1ab/nsp2411A411VgCtgTt33B.1.1.370.000579
ORF1ab/nsp2411A411GgCtgGt33B.1.1.70.000003
ORF1ab/nsp2411A411VgCtgTt33B.1.1260.003827
ORF1ab/nsp2411A411TGctAct33B.1.177.70.000495
ORF1ab/nsp2411A411AgcTgcC33B.1.20.000026
ORF1ab/nsp2411A411VgCtgTt33B.1.3620.004622
ORF1ab/nsp2411A411VgCtgTt33B.1.4160.003807
ORF1ab/nsp2411A411VgCtgTt33B.1.466.20.001174
ORF1ab/nsp2411A411SGctTct33B.4.50.035714
ORF1ab/nsp2411A411AgcTgcC33P.10.000047
ORF1ab/nsp2411A411VgCtgTt22A.30.004193
ORF1ab/nsp2411A411del1gCtg-t12All0
ORF1ab/nsp2411A411del1gcTgc-12All0
ORF1ab/nsp2411A411TGctAct22AY.1020.000053
ORF1ab/nsp2411A411VgCtgTt22AY.1100.000225
ORF1ab/nsp2411A411DgCtgAt22AY.1180.000125
ORF1ab/nsp2411A411TGctAct22AY.120.10.000642
ORF1ab/nsp2411A411VgCtgTt22AY.130.000322
ORF1ab/nsp2411A411AgcTgcC22AY.160.000759
ORF1ab/nsp2411A411TGctAct22AY.200.000078
ORF1ab/nsp2411A411SGctTct22AY.250.000012
ORF1ab/nsp2411A411DgCtgAt22AY.290.000032
ORF1ab/nsp2411A411VgCtgTt22AY.3.10.000171
ORF1ab/nsp2411A411VgCtgTt22AY.330.000134
ORF1ab/nsp2411A411VgCtgTt22AY.360.000296
ORF1ab/nsp2411A411VgCtgTt22AY.39.10.000079
ORF1ab/nsp2411A411delGCT---22AY.40.000003
ORF1ab/nsp2411A411AgcTgcC22AY.400.001929
ORF1ab/nsp2411A411SGctTct22AY.420.00008
ORF1ab/nsp2411A411AgcTgcC22AY.440.000012
ORF1ab/nsp2411A411TGctAct22AY.440.000012
ORF1ab/nsp2411A411VgCtgTt22AY.460.000208
ORF1ab/nsp2411A411VgCtgTt22AY.46.40.000329
ORF1ab/nsp2411A411VgCtgTt22AY.46.50.000397
ORF1ab/nsp2411A411VgCtgTt22AY.46.60.000144
ORF1ab/nsp2411A411VgCtgTt22AY.70.000392
ORF1ab/nsp2411A411VgCtgTt22AY.800.002257
ORF1ab/nsp2411A411VgCtgTt22AY.840.000875
ORF1ab/nsp2411A411VgCtgTt22AY.850.000854
ORF1ab/nsp2411A411VgCtgTt22AY.880.001768
ORF1ab/nsp2411A411VgCtgTt22AY.920.000575
ORF1ab/nsp2411A411VgCtgTt22AY.99.10.003106
ORF1ab/nsp2411A411SGctTct22B0.000256
ORF1ab/nsp2411A411PGctCct22B.10.000018
ORF1ab/nsp2411A411TGctAct22B.10.000018
ORF1ab/nsp2411A411VgCtgTt22B.1.1.1700.002494
ORF1ab/nsp2411A411VgCtgTt22B.1.1.1980.002937
ORF1ab/nsp2411A411VgCtgTt22B.1.1.3120.003824
ORF1ab/nsp2411A411delGCT---22B.1.1.3480.001592
ORF1ab/nsp2411A411VgCtgTt22B.1.1.3630.011976
ORF1ab/nsp2411A411VgCtgTt22B.1.1.3680.006173
ORF1ab/nsp2411A411VgCtgTt22B.1.1.4090.005666
ORF1ab/nsp2411A411VgCtgTt22B.1.1.4640.002946
ORF1ab/nsp2411A411VgCtgTt22B.1.1.5260.007092
ORF1ab/nsp2411A411PGctCct22B.1.1.70.000002
ORF1ab/nsp2411A411VgCtgTt22B.1.160.300.005952
ORF1ab/nsp2411A411VgCtgTt22B.1.177.60.001953
ORF1ab/nsp2411A411VgCtgTt22B.1.177.810.000379
ORF1ab/nsp2411A411VgCtgTt22B.1.177.820.000955
ORF1ab/nsp2411A411VgCtgTt22B.1.177.860.000367
ORF1ab/nsp2411A411VgCtgTt22B.1.177.90.002663
ORF1ab/nsp2411A411VgCtgTt22B.1.2060.001631
ORF1ab/nsp2411A411SGctTct22B.1.2430.000139
ORF1ab/nsp2411A411VgCtgTt22B.1.3110.000549
ORF1ab/nsp2411A411VgCtgTt22B.1.3300.057143
ORF1ab/nsp2411A411VgCtgTt22B.1.36.270.001527
ORF1ab/nsp2411A411VgCtgTt22B.1.36.290.001035
ORF1ab/nsp2411A411VgCtgTt22B.1.3750.001639
ORF1ab/nsp2411A411delGCT---22B.1.4240.016129
ORF1ab/nsp2411A411VgCtgTt22B.1.4590.008163
ORF1ab/nsp2411A411VgCtgTt22B.1.5070.022472
ORF1ab/nsp2411A411TGctAct22B.1.5260.000047
ORF1ab/nsp2411A411VgCtgTt22B.1.5740.004301
ORF1ab/nsp2411A411VgCtgTt22B.1.5770.001375
ORF1ab/nsp2411A411VgCtgTt22B.1.6000.011696
ORF1ab/nsp2411A411DgCtgAt22B.1.6010.060606
ORF1ab/nsp2411A411VgCtgTt22B.1.617.10.000258
ORF1ab/nsp2411A411VgCtgTt22B.400.000729
ORF1ab/nsp2411A411VgCtgTt22C.360.001821
ORF1ab/nsp2411A411delGCT---22N.60.014184
ORF1ab/nsp2411A411VgCtgTt22P.1.130.001797
ORF1ab/nsp2411A411VgCtgTt22P.1.140.000096
ORF1ab/nsp2411A411VgCtgTt22P.1.20.002312
ORF1ab/nsp2411A411delGCT---22P.20.000373
ORF1ab/nsp2411A411VgCtgTt22Q.20.001227
ORF1ab/nsp2411A411VgCtgTt22Q.30.00029
ORF1ab/nsp2411A411AgcTgcA11A0.000387
ORF1ab/nsp2411A411VgCtgTt11A0.000387
ORF1ab/nsp2411A411VgCtgTt11A.10.000282
ORF1ab/nsp2411A411SGctTct11A.20.000662
ORF1ab/nsp2411A411VgCtgTt11A.230.010526
ORF1ab/nsp2411A411VgCtgTt11A.270.001656
ORF1ab/nsp2411A411VgCtgTt11AD.20.000219
ORF1ab/nsp2411A411VgCtgTt11AL.10.012987
ORF1ab/nsp2411A411CGCtTGt11All0
ORF1ab/nsp2411A411IGCtATt11All0
ORF1ab/nsp2411A411VgCtgTt11AT.10.005128
ORF1ab/nsp2411A411VgCtgTt11AY.10.000396
ORF1ab/nsp2411A411delGCT---11AY.1000.000046
ORF1ab/nsp2411A411VgCtgTt11AY.1010.00049
ORF1ab/nsp2411A411SGcTTcA11AY.1030.000006
ORF1ab/nsp2411A411TGctAct11AY.1030.000006
ORF1ab/nsp2411A411delGCT---11AY.1030.000006
ORF1ab/nsp2411A411VgCtgTt11AY.1040.001984
ORF1ab/nsp2411A411TGctAct11AY.1060.000335
ORF1ab/nsp2411A411VgCtgTt11AY.1110.000183
ORF1ab/nsp2411A411TGctAct11AY.1110.000183
ORF1ab/nsp2411A411delGCT---11AY.1130.000142
ORF1ab/nsp2411A411TGctAct11AY.1160.000287
ORF1ab/nsp2411A411AgcTgcC11AY.1190.000035
ORF1ab/nsp2411A411VgCtgTt11AY.120.2.10.000498
ORF1ab/nsp2411A411AgcTgcC11AY.1210.000135
ORF1ab/nsp2411A411VgCtgTt11AY.160.00038
ORF1ab/nsp2411A411delGCT---11AY.16.10.00047
ORF1ab/nsp2411A411AgcTgcC11AY.200.000039
ORF1ab/nsp2411A411AgcTgcC11AY.230.00007
ORF1ab/nsp2411A411VgCtgTt11AY.23.10.000417
ORF1ab/nsp2411A411VgCtgTt11AY.29.10.000221
ORF1ab/nsp2411A411SGctTct11AY.30.00001
ORF1ab/nsp2411A411GgCtgGt11AY.30.00001
ORF1ab/nsp2411A411CGCtTGt11AY.30.00001
ORF1ab/nsp2411A411delGCT---11AY.30.00001
ORF1ab/nsp2411A411VgCtgTt11AY.300.000396
ORF1ab/nsp2411A411TGctAct11AY.340.000097
ORF1ab/nsp2411A411VgCtgTt11AY.340.000097
ORF1ab/nsp2411A411VgCtgTt11AY.350.000233
ORF1ab/nsp2411A411SGctTct11AY.390.000025
ORF1ab/nsp2411A411TGctAct11AY.39.10.00004
ORF1ab/nsp2411A411delGCT---11AY.4.50.000107
ORF1ab/nsp2411A411TGctAct11AY.420.00004
ORF1ab/nsp2411A411del1gCtg-t11AY.440.000006
ORF1ab/nsp2411A411DgCtgAt11AY.440.000006
ORF1ab/nsp2411A411SGctTct11AY.470.000031
ORF1ab/nsp2411A411TGctAct11AY.470.000031
ORF1ab/nsp2411A411AgcTgcC11AY.470.000031
ORF1ab/nsp2411A411delGCT---11AY.540.000095
ORF1ab/nsp2411A411TGctAct11AY.540.000095
ORF1ab/nsp2411A411VgCtgTt11AY.560.001605
ORF1ab/nsp2411A411VgCtgTt11AY.590.00053
ORF1ab/nsp2411A411AgcTgcC11AY.60.000041
ORF1ab/nsp2411A411AgcTgcC11AY.650.000533
ORF1ab/nsp2411A411VgCtgTt11AY.690.000187
ORF1ab/nsp2411A411VgCtgTt11AY.7.10.000113
ORF1ab/nsp2411A411TGctAct11AY.7.10.000113
ORF1ab/nsp2411A411TGctAct11AY.750.000056
ORF1ab/nsp2411A411AgcTgcC11AY.90.000068
ORF1ab/nsp2411A411SGctTct11AY.90.000068
ORF1ab/nsp2411A411delGCT---11AY.9.20.000037
ORF1ab/nsp2411A411VgCtgTt11AY.930.000273
ORF1ab/nsp2411A411delGCT---11AY.930.000273
ORF1ab/nsp2411A411VgCtgTt11AY.950.000761
ORF1ab/nsp2411A411TGctAct11AY.98.10.000048
ORF1ab/nsp2411A411VgCtgTt11AY.99.20.000092
ORF1ab/nsp2411A411VgCtgTt11B0.000128
ORF1ab/nsp2411A411TGctAct11B0.000128
ORF1ab/nsp2411A411AgcTgcC11B.10.000009
ORF1ab/nsp2411A411delGCT---11B.1.10.000018
ORF1ab/nsp2411A411VgCtgTt11B.1.1.10.000327
ORF1ab/nsp2411A411VgCtgTt11B.1.1.100.001115
ORF1ab/nsp2411A411VgCtgTt11B.1.1.1410.002012
ORF1ab/nsp2411A411SGctTct11B.1.1.1480.008772
ORF1ab/nsp2411A411DgCtgAt11B.1.1.1640.005155
ORF1ab/nsp2411A411PGctCct11B.1.1.1690.018182
ORF1ab/nsp2411A411VgCtgTt11B.1.1.1760.000439
ORF1ab/nsp2411A411VgCtgTt11B.1.1.1860.003436
ORF1ab/nsp2411A411VgCtgTt11B.1.1.2040.00304
ORF1ab/nsp2411A411VgCtgTt11B.1.1.2170.003636
ORF1ab/nsp2411A411VgCtgTt11B.1.1.250.000569
ORF1ab/nsp2411A411AgcTgcC11B.1.1.250.000569
ORF1ab/nsp2411A411VgCtgTt11B.1.1.2570.009709
ORF1ab/nsp2411A411VgCtgTt11B.1.1.2730.006757
ORF1ab/nsp2411A411VgCtgTt11B.1.1.2770.000759
ORF1ab/nsp2411A411TGctAct11B.1.1.2790.001121
ORF1ab/nsp2411A411VgCtgTt11B.1.1.280.000311
ORF1ab/nsp2411A411VgCtgTt11B.1.1.310.066667
ORF1ab/nsp2411A411VgCtgTt11B.1.1.3110.000358
ORF1ab/nsp2411A411DgCtgAt11B.1.1.3180.000302
ORF1ab/nsp2411A411VgCtgTt11B.1.1.3180.000302
ORF1ab/nsp2411A411VgCtgTt11B.1.1.330.000421
ORF1ab/nsp2411A411VgCtgTt11B.1.1.3480.000796
ORF1ab/nsp2411A411VgCtgTt11B.1.1.3690.000446
ORF1ab/nsp2411A411VgCtgTt11B.1.1.3770.001381
ORF1ab/nsp2411A411VgCtgTt11B.1.1.390.00051
ORF1ab/nsp2411A411delGCT---11B.1.1.4160.000905
ORF1ab/nsp2411A411VgCtgTt11B.1.1.4320.001266
ORF1ab/nsp2411A411VgCtgTt11B.1.1.500.000679
ORF1ab/nsp2411A411VgCtgTt11B.1.1.510.001718
ORF1ab/nsp2411A411AgcTgcC11B.1.1.5190.00004
ORF1ab/nsp2411A411PGctCct11B.1.1.5260.003546
ORF1ab/nsp2411A411VgCtgTt11B.1.1.630.000386
ORF1ab/nsp2411A411VgCtgTt11B.1.110.30.000718
ORF1ab/nsp2411A411VgCtgTt11B.1.1110.001175
ORF1ab/nsp2411A411VgCtgTt11B.1.1240.007812
ORF1ab/nsp2411A411VgCtgTt11B.1.1470.000756
ORF1ab/nsp2411A411SGctTct11B.1.1570.002985
ORF1ab/nsp2411A411SGctTct11B.1.1600.000031
ORF1ab/nsp2411A411VgCtgTt11B.1.160.140.002119
ORF1ab/nsp2411A411AgcTgcC11B.1.160.150.00495
ORF1ab/nsp2411A411AgcTgcG11B.1.160.90.007194
ORF1ab/nsp2411A411VgCtgTt11B.1.177.160.000664
ORF1ab/nsp2411A411delGCT---11B.1.177.180.00116
ORF1ab/nsp2411A411VgCtgTt11B.1.177.210.000076
ORF1ab/nsp2411A411VgCtgTt11B.1.177.260.006993
ORF1ab/nsp2411A411VgCtgTt11B.1.177.330.001645
ORF1ab/nsp2411A411VgCtgTt11B.1.177.350.000691
ORF1ab/nsp2411A411VgCtgTt11B.1.177.40.000211
ORF1ab/nsp2411A411VgCtgTt11B.1.177.440.000519
ORF1ab/nsp2411A411VgCtgTt11B.1.177.530.002392
ORF1ab/nsp2411A411SGctTct11B.1.177.540.000606
ORF1ab/nsp2411A411VgCtgTt11B.1.177.770.000726
ORF1ab/nsp2411A411SGctTct11B.1.177.810.000189
ORF1ab/nsp2411A411SGctTct11B.1.177.830.001481
ORF1ab/nsp2411A411VgCtgTt11B.1.177.870.000728
ORF1ab/nsp2411A411delGCT---11B.1.1790.003759
ORF1ab/nsp2411A411IGCtATt11B.1.20.000009
ORF1ab/nsp2411A411PGctCct11B.1.20.000009
ORF1ab/nsp2411A411del1gcTgc-11B.1.20.000009
ORF1ab/nsp2411A411DgCtgAt11B.1.20.000009
ORF1ab/nsp2411A411SGctTct11B.1.2210.000071
ORF1ab/nsp2411A411delGCT---11B.1.2340.000132
ORF1ab/nsp2411A411VgCtgTt11B.1.2390.001221
ORF1ab/nsp2411A411VgCtgTt11B.1.2410.000812
ORF1ab/nsp2411A411AgcTgcC11B.1.2430.00007
ORF1ab/nsp2411A411SGctTct11B.1.2580.000067
ORF1ab/nsp2411A411PGctCct11B.1.258.110.000396
ORF1ab/nsp2411A411SGctTct11B.1.258.170.000104
ORF1ab/nsp2411A411SGctTct11B.1.2600.003344
ORF1ab/nsp2411A411VgCtgTt11B.1.2650.001271
ORF1ab/nsp2411A411AgcTgcC11B.1.2740.011905
ORF1ab/nsp2411A411VgCtgTt11B.1.2910.019231
ORF1ab/nsp2411A411VgCtgTt11B.1.3240.001605
ORF1ab/nsp2411A411VgCtgTt11B.1.3290.000608
ORF1ab/nsp2411A411AgcTgcC11B.1.360.000146
ORF1ab/nsp2411A411VgCtgTt11B.1.36.160.001425
ORF1ab/nsp2411A411VgCtgTt11B.1.36.310.001751
ORF1ab/nsp2411A411VgCtgTt11B.1.36.360.000602
ORF1ab/nsp2411A411VgCtgTt11B.1.36.380.001642
ORF1ab/nsp2411A411VgCtgTt11B.1.3610.001289
ORF1ab/nsp2411A411TGctAct11B.1.3620.001541
ORF1ab/nsp2411A411VgCtgTt11B.1.3660.004878
ORF1ab/nsp2411A411TGctAct11B.1.3660.004878
ORF1ab/nsp2411A411VgCtgTt11B.1.3670.000792
ORF1ab/nsp2411A411SGctTct11B.1.3670.000792
ORF1ab/nsp2411A411TGctAct11B.1.3690.000285
ORF1ab/nsp2411A411AgcTgcC11B.1.3690.000285
ORF1ab/nsp2411A411VgCtgTt11B.1.3700.008
ORF1ab/nsp2411A411VgCtgTt11B.1.3800.006623
ORF1ab/nsp2411A411VgCtgTt11B.1.3910.001127
ORF1ab/nsp2411A411VgCtgTt11B.1.4000.000429
ORF1ab/nsp2411A411VgCtgTt11B.1.4040.001302
ORF1ab/nsp2411A411AgcTgcC11B.1.416.10.001563
ORF1ab/nsp2411A411VgCtgTt11B.1.416.10.001563
ORF1ab/nsp2411A411GgCtgGt11B.1.4270.00005
ORF1ab/nsp2411A411TGctAct11B.1.4290.000024
ORF1ab/nsp2411A411delGCT---11B.1.4290.000024
ORF1ab/nsp2411A411SGctTct11B.1.4340.052632
ORF1ab/nsp2411A411VgCtgTt11B.1.438.10.000107
ORF1ab/nsp2411A411DgCtgAt11B.1.4530.003236
ORF1ab/nsp2411A411VgCtgTt11B.1.4560.003268
ORF1ab/nsp2411A411PGctCct11B.1.4590.004082
ORF1ab/nsp2411A411VgCtgTt11B.1.4680.005714
ORF1ab/nsp2411A411VgCtgTt11B.1.4990.00105
ORF1ab/nsp2411A411DgCtgAt11B.1.5170.000427
ORF1ab/nsp2411A411AgcTgcC11B.1.5250.000113
ORF1ab/nsp2411A411VgCtgTt11B.1.5460.003704
ORF1ab/nsp2411A411delGCT---11B.1.5610.000397
ORF1ab/nsp2411A411VgCtgTt11B.1.5640.000426
ORF1ab/nsp2411A411VgCtgTt11B.1.5880.00091
ORF1ab/nsp2411A411VgCtgTt11B.1.5900.004545
ORF1ab/nsp2411A411SGctTct11B.1.5950.000261
ORF1ab/nsp2411A411SGctTct11B.1.5960.000087
ORF1ab/nsp2411A411VgCtgTt11B.1.6120.002653
ORF1ab/nsp2411A411SGctTct11B.1.617.10.000129
ORF1ab/nsp2411A411DgCtgAt11B.1.617.10.000129
ORF1ab/nsp2411A411delGCT---11B.1.617.20.000004
ORF1ab/nsp2411A411DgCtgAt11B.1.617.20.000004
ORF1ab/nsp2411A411PGctCct11B.1.617.20.000004
ORF1ab/nsp2411A411VgCtgTt11B.1.617.30.002985
ORF1ab/nsp2411A411SGctTct11B.1.760.011364
ORF1ab/nsp2411A411SGctTct11B.290.003509
ORF1ab/nsp2411A411SGctTct11B.350.007812
ORF1ab/nsp2411A411PGctCct11B.40.002208
ORF1ab/nsp2411A411PGctCct11B.4.50.011905
ORF1ab/nsp2411A411delGCT---11B.570.015152
ORF1ab/nsp2411A411SGctTct11B.60.00091
ORF1ab/nsp2411A411VgCtgTt11B.60.00091
ORF1ab/nsp2411A411VgCtgTt11C.36.30.000567
ORF1ab/nsp2411A411TGctAct11D.20.000075
ORF1ab/nsp2411A411PGctCct11D.20.000075
ORF1ab/nsp2411A411SGctTct11D.30.005917
ORF1ab/nsp2411A411VgCtgTt11N.40.004255
ORF1ab/nsp2411A411delGCT---11P.10.000016
ORF1ab/nsp2411A411VgCtgTt11P.1.100.000269
ORF1ab/nsp2411A411VgCtgTt11P.1.120.000484
ORF1ab/nsp2411A411SGctTct11P.1.140.000048
ORF1ab/nsp2411A411VgCtgTt11P.1.150.000232
ORF1ab/nsp2411A411VgCtgTt11P.20.000187
ORF1ab/nsp2411A411VgCtgTt11P.60.003145
ORF1ab/nsp2411A411delGCT---11Q.10.000126
ORF1ab/nsp2411A411TGctAct11Q.10.000126
ORF1ab/nsp2411A411VgCtgTt11Q.40.000455
ORF1ab/nsp2411A411VgCtgTt11U.30.003861