CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 410 | L410F | L590F | nonsyn | ttG | ttT | 3904 | 3882 | 0.994365 | 2033-2035 |
ORF1ab/nsp2 | 410 | L410F | L590F | nonsyn | ttG | ttC | 3904 | 22 | 0.00563525 | 2033-2035 |
ORF1ab/nsp2 | 410 | L410L | L590L | syn | ttG | ttA | 467 | 427 | 0.914347 | 2033-2035 |
ORF1ab/nsp2 | 410 | L410L | L590L | syn | Ttg | Ctg | 467 | 40 | 0.0856531 | 2033-2035 |
ORF1ab/nsp2 | 410 | L410S | L590S | nonsyn | tTg | tCg | 58 | 56 | 0.965517 | 2033-2035 |
ORF1ab/nsp2 | 410 | L410S | L590S | nonsyn | tTG | tCC | 58 | 1 | 0.0172414 | 2033-2035 |
ORF1ab/nsp2 | 410 | L410S | L590S | nonsyn | tTG | tCA | 58 | 1 | 0.0172414 | 2033-2035 |
ORF1ab/nsp2 | 410 | L410del | L590del | del | TTG | --- | 41 | 41 | 1 | 2033-2035 |
ORF1ab/nsp2 | 410 | L410M | L590M | nonsyn | Ttg | Atg | 7 | 7 | 1 | 2033-2035 |
ORF1ab/nsp2 | 410 | L410W | L590W | nonsyn | tTg | tGg | 5 | 5 | 1 | 2033-2035 |
ORF1ab/nsp2 | 410 | L410A | L590A | nonsyn | TTg | GCg | 4 | 4 | 1 | 2033-2035 |
ORF1ab/nsp2 | 410 | L410del2 | L590del2 | del | tTG | t-- | 4 | 4 | 1 | 2033-2035 |
ORF1ab/nsp2 | 410 | L410del1 | L590del1 | del | ttG | tt- | 3 | 3 | 1 | 2033-2035 |
ORF1ab/nsp2 | 410 | L410V | L590V | nonsyn | Ttg | Gtg | 2 | 2 | 1 | 2033-2035 |
ORF1ab/nsp2 | 410 | L410X | L590X | nonsyn | tTg | tAg | 2 | 2 | 1 | 2033-2035 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 3882 | 3904 | All | 0.000742 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttC | 22 | 3904 | All | 0.000004 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 692 | 695 | AY.4 | 0.001077 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttC | 3 | 695 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 535 | 545 | B.1.1.7 | 0.000479 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttC | 10 | 545 | B.1.1.7 | 0.000009 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 427 | 467 | All | 0.000082 |
ORF1ab/nsp2 | 410 | L410L | Ttg | Ctg | 40 | 467 | All | 0.000008 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 440 | 440 | B.1.1.464 | 0.648012 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 255 | 255 | B.1.36.9 | 0.819936 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 216 | 216 | AY.4 | 0.000336 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 174 | 175 | AY.25 | 0.001047 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttC | 1 | 175 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 174 | 175 | B.1.617.2 | 0.000655 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttC | 1 | 175 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 105 | 106 | AY.44 | 0.000639 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttC | 1 | 106 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 103 | 104 | B.1 | 0.000943 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttC | 1 | 104 | B.1 | 0.000009 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 90 | 90 | AY.46.6 | 0.006499 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 86 | 86 | B.1.561 | 0.034141 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 83 | 84 | AY.103 | 0.000515 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttC | 1 | 84 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 81 | 81 | AY.43 | 0.000359 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 73 | 73 | AY.102 | 0.001936 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 73 | 73 | B.1.2 | 0.000643 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 69 | 69 | AY.3 | 0.000686 |
ORF1ab/nsp2 | 410 | L410S | tTg | tCg | 56 | 58 | All | 0.000011 |
ORF1ab/nsp2 | 410 | L410S | tTG | tCC | 1 | 58 | All | 0 |
ORF1ab/nsp2 | 410 | L410S | tTG | tCA | 1 | 58 | All | 0 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 53 | 53 | P.1 | 0.000835 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 41 | 41 | All | 0.000008 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 40 | 40 | AY.39.1 | 0.001585 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 39 | 39 | AY.4.5 | 0.004192 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 34 | 34 | AY.3 | 0.000338 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 28 | 28 | AY.26 | 0.000793 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 28 | 28 | B.1.1 | 0.000508 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 27 | 27 | B.1 | 0.000247 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 27 | 27 | B.1.429 | 0.000635 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 25 | 26 | B.1.1 | 0.000454 |
ORF1ab/nsp2 | 410 | L410L | Ttg | Ctg | 1 | 26 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 25 | 25 | B.1.221 | 0.001776 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 23 | 23 | B.1.241 | 0.018669 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 22 | 22 | AY.39 | 0.000544 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 21 | 21 | AY.98.1 | 0.001017 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 16 | 20 | B.1.1.7 | 0.000014 |
ORF1ab/nsp2 | 410 | L410L | Ttg | Ctg | 4 | 20 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 18 | 18 | AY.62 | 0.007843 |
ORF1ab/nsp2 | 410 | L410S | tTg | tCg | 18 | 18 | B.1.2 | 0.000158 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 18 | 18 | B.1.351 | 0.000535 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 17 | 17 | AY.4.2 | 0.000369 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 16 | 16 | AY.100 | 0.000736 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 14 | 14 | AY.5 | 0.000289 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 14 | 14 | B.1.617.2 | 0.000053 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 13 | 13 | AY.29 | 0.000205 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 12 | 13 | B.1.1.519 | 0.000477 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttC | 1 | 13 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 13 | 13 | B.1.177.12 | 0.001972 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 12 | 12 | B.1.177 | 0.000158 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 12 | 12 | B.1.36 | 0.001751 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 11 | 11 | AY.120 | 0.000409 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 11 | 11 | B.1.1.203 | 0.186441 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 10 | 10 | AY.29.1 | 0.002205 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 10 | 10 | B.6.6 | 0.008889 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 9 | 9 | AY.108 | 0.009923 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 9 | 9 | R.1 | 0.00081 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 8 | 8 | AY.4.2.1 | 0.001192 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 8 | 8 | AY.75 | 0.000448 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 8 | 8 | B.1.1.222 | 0.001632 |
ORF1ab/nsp2 | 410 | L410L | Ttg | Ctg | 5 | 8 | P.1 | 0.000079 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 3 | 8 | P.1 | 0.000047 |
ORF1ab/nsp2 | 410 | L410M | Ttg | Atg | 7 | 7 | All | 0.000001 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 7 | 7 | AY.34.1 | 0.00357 |
ORF1ab/nsp2 | 410 | L410S | tTg | tCg | 7 | 7 | B.1.1.7 | 0.000006 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 7 | 7 | B.1.160 | 0.000218 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 7 | 7 | B.1.429 | 0.000165 |
ORF1ab/nsp2 | 410 | L410L | Ttg | Ctg | 4 | 6 | AY.103 | 0.000025 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 2 | 6 | AY.103 | 0.000012 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 6 | 6 | AY.121 | 0.000812 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 6 | 6 | AY.13 | 0.000966 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp2 | 410 | L410L | Ttg | Ctg | 6 | 6 | AY.33 | 0.000401 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 6 | 6 | AY.36 | 0.000889 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp2 | 410 | L410S | tTg | tCg | 6 | 6 | AY.74 | 0.000694 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 6 | 6 | B.1.1.214 | 0.000333 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 6 | 6 | B.1.177.21 | 0.000459 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 6 | 6 | B.1.258.14 | 0.005882 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 6 | 6 | B.1.503 | 0.014925 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 6 | 6 | B.1.8 | 0.011834 |
ORF1ab/nsp2 | 410 | L410W | tTg | tGg | 5 | 5 | All | 0.000001 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 3 | 5 | AY.100 | 0.000138 |
ORF1ab/nsp2 | 410 | L410L | Ttg | Ctg | 2 | 5 | AY.100 | 0.000092 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 5 | 5 | AY.106 | 0.001674 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 5 | 5 | AY.37 | 0.00158 |
ORF1ab/nsp2 | 410 | L410S | tTg | tCg | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 5 | 5 | AY.71 | 0.002375 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 5 | 5 | AY.99.2 | 0.000461 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 5 | 5 | B.1.1.348 | 0.003981 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 5 | 5 | B.1.1.63 | 0.001929 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 410 | L410L | Ttg | Ctg | 5 | 5 | B.1.351 | 0.000149 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 5 | 5 | B.1.362 | 0.007704 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 5 | 5 | B.1.369 | 0.001426 |
ORF1ab/nsp2 | 410 | L410A | TTg | GCg | 4 | 4 | All | 0.000001 |
ORF1ab/nsp2 | 410 | L410del2 | tTG | t-- | 4 | 4 | All | 0.000001 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 4 | 4 | AY.119 | 0.000141 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 4 | 4 | AY.14 | 0.000352 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp2 | 410 | L410A | TTg | GCg | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 4 | 4 | B.1.1.216 | 0.003562 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 4 | 4 | B.1.605 | 0.02381 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 4 | 4 | P.1.1 | 0.001271 |
ORF1ab/nsp2 | 410 | L410del1 | ttG | tt- | 3 | 3 | All | 0.000001 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 3 | 3 | AY.101 | 0.001471 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 3 | 3 | AY.114 | 0.000693 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp2 | 410 | L410M | Ttg | Atg | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp2 | 410 | L410S | tTg | tCg | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 3 | 3 | AY.98 | 0.000237 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 410 | L410S | tTg | tCg | 3 | 3 | B.1.1.432 | 0.003797 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 2 | 3 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 410 | L410L | Ttg | Ctg | 1 | 3 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 3 | 3 | B.1.232 | 0.001612 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 3 | 3 | C.30 | 0.005181 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 2 | 3 | D.2 | 0.00015 |
ORF1ab/nsp2 | 410 | L410L | Ttg | Ctg | 1 | 3 | D.2 | 0.000075 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 3 | 3 | P.1.14 | 0.000143 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp2 | 410 | L410V | Ttg | Gtg | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 410 | L410X | tTg | tAg | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 410 | L410L | Ttg | Ctg | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp2 | 410 | L410L | Ttg | Ctg | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 1 | 2 | AY.39.1 | 0.00004 |
ORF1ab/nsp2 | 410 | L410L | Ttg | Ctg | 1 | 2 | AY.39.1 | 0.00004 |
ORF1ab/nsp2 | 410 | L410W | tTg | tGg | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | AY.93 | 0.000546 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp2 | 410 | L410S | tTg | tCg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp2 | 410 | L410L | Ttg | Ctg | 2 | 2 | B.1.1.226 | 0.011628 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | B.1.1.326 | 0.003521 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | B.1.1.337 | 0.007194 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | B.1.396 | 0.001411 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | B.1.577 | 0.001375 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp2 | 410 | L410S | tTg | tCg | 1 | 2 | B.4 | 0.002208 |
ORF1ab/nsp2 | 410 | L410S | tTG | tCC | 1 | 2 | B.4 | 0.002208 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | A.19 | 0.009434 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp2 | 410 | L410del2 | tTG | t-- | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 410 | L410S | tTg | tCg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 410 | L410del2 | tTG | t-- | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 410 | L410S | tTg | tCg | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 410 | L410V | Ttg | Gtg | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.120.2.1 | 0.000498 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 410 | L410M | Ttg | Atg | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 410 | L410del2 | tTG | t-- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 410 | L410S | tTg | tCg | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 410 | L410S | tTg | tCg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 410 | L410S | tTg | tCg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 410 | L410S | tTG | tCA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 410 | L410S | tTg | tCg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 410 | L410del2 | tTG | t-- | 1 | 1 | AY.93 | 0.000273 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 410 | L410S | tTg | tCg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.1.182 | 0.090909 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.1.230 | 0.009174 |
ORF1ab/nsp2 | 410 | L410V | Ttg | Gtg | 1 | 1 | B.1.1.258 | 0.003257 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttC | 1 | 1 | B.1.1.268 | 0.014925 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.1.389 | 0.006061 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp2 | 410 | L410M | Ttg | Atg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 410 | L410W | tTg | tGg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp2 | 410 | L410X | tTg | tAg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 410 | L410del1 | ttG | tt- | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 410 | L410W | tTg | tGg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.289 | 0.00266 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp2 | 410 | L410del1 | ttG | tt- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.402 | 0.009804 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp2 | 410 | L410del1 | ttG | tt- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.460 | 0.017857 |
ORF1ab/nsp2 | 410 | L410L | Ttg | Ctg | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp2 | 410 | L410W | tTg | tGg | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp2 | 410 | L410S | tTg | tCg | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp2 | 410 | L410S | tTg | tCg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.600 | 0.005848 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 410 | L410X | tTg | tAg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttC | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp2 | 410 | L410S | tTg | tCg | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttC | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 410 | L410L | Ttg | Ctg | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp2 | 410 | L410L | Ttg | Ctg | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 410 | L410S | tTg | tCg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 410 | L410M | Ttg | Atg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 410 | L410L | Ttg | Ctg | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 410 | L410L | Ttg | Ctg | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 410 | L410M | Ttg | Atg | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | P.1.4 | 0.000977 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp2 | 410 | L410del | TTG | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 410 | L410F | ttG | ttT | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp2 | 410 | L410L | ttG | ttA | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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