CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 405 | M405I | M585I | nonsyn | atG | atA | 1329 | 1248 | 0.939052 | 2018-2020 |
ORF1ab/nsp2 | 405 | M405I | M585I | nonsyn | atG | atT | 1329 | 73 | 0.0549285 | 2018-2020 |
ORF1ab/nsp2 | 405 | M405I | M585I | nonsyn | atG | atC | 1329 | 8 | 0.00601956 | 2018-2020 |
ORF1ab/nsp2 | 405 | M405V | M585V | nonsyn | Atg | Gtg | 913 | 913 | 1 | 2018-2020 |
ORF1ab/nsp2 | 405 | M405T | M585T | nonsyn | aTg | aCg | 281 | 281 | 1 | 2018-2020 |
ORF1ab/nsp2 | 405 | M405L | M585L | nonsyn | Atg | Ctg | 70 | 67 | 0.957143 | 2018-2020 |
ORF1ab/nsp2 | 405 | M405L | M585L | nonsyn | Atg | Ttg | 70 | 3 | 0.0428571 | 2018-2020 |
ORF1ab/nsp2 | 405 | M405del | M585del | del | ATG | --- | 47 | 47 | 1 | 2018-2020 |
ORF1ab/nsp2 | 405 | M405R | M585R | nonsyn | aTg | aGg | 5 | 5 | 1 | 2018-2020 |
ORF1ab/nsp2 | 405 | M405K | M585K | nonsyn | aTg | aAg | 4 | 3 | 0.75 | 2018-2020 |
ORF1ab/nsp2 | 405 | M405K | M585K | nonsyn | aTG | aAA | 4 | 1 | 0.25 | 2018-2020 |
ORF1ab/nsp2 | 405 | M405del2 | M585del2 | del | ATg | --g | 3 | 3 | 1 | 2018-2020 |
ORF1ab/nsp2 | 405 | M405C | M585C | nonsyn | ATG | TGT | 1 | 1 | 1 | 2018-2020 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1248 | 1329 | All | 0.000239 |
ORF1ab/nsp2 | 405 | M405I | atG | atT | 73 | 1329 | All | 0.000014 |
ORF1ab/nsp2 | 405 | M405I | atG | atC | 8 | 1329 | All | 0.000002 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 913 | 913 | All | 0.000175 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 832 | 841 | AY.4 | 0.001295 |
ORF1ab/nsp2 | 405 | M405I | atG | atT | 9 | 841 | AY.4 | 0.000014 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 511 | 511 | AY.5 | 0.010552 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 281 | 281 | All | 0.000054 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 133 | 133 | B.1.314 | 1 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 85 | 93 | AY.25 | 0.000511 |
ORF1ab/nsp2 | 405 | M405I | atG | atT | 8 | 93 | AY.25 | 0.000048 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 76 | 76 | B.1.177.18 | 0.088167 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 76 | 76 | B.1.429 | 0.001788 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 54 | 72 | B.1.1.7 | 0.000048 |
ORF1ab/nsp2 | 405 | M405I | atG | atT | 15 | 72 | B.1.1.7 | 0.000013 |
ORF1ab/nsp2 | 405 | M405I | atG | atC | 3 | 72 | B.1.1.7 | 0.000003 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ctg | 67 | 70 | All | 0.000013 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ttg | 3 | 70 | All | 0.000001 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 50 | 50 | B.1.1.7 | 0.000045 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 47 | 47 | All | 0.000009 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 45 | 45 | XA | 1 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 35 | 37 | B.1.617.2 | 0.000132 |
ORF1ab/nsp2 | 405 | M405I | atG | atT | 1 | 37 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 405 | M405I | atG | atC | 1 | 37 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 32 | 32 | B.1.525 | 0.003621 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 28 | 28 | B.1.637 | 0.002046 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 24 | 24 | AY.103 | 0.000149 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 22 | 24 | AY.43 | 0.000097 |
ORF1ab/nsp2 | 405 | M405I | atG | atC | 1 | 24 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 405 | M405I | atG | atT | 1 | 24 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 19 | 19 | P.2 | 0.003546 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 18 | 18 | AY.26 | 0.00051 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 18 | 18 | B.1.1.7 | 0.000016 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 12 | 17 | B.1 | 0.00011 |
ORF1ab/nsp2 | 405 | M405I | atG | atT | 4 | 17 | B.1 | 0.000037 |
ORF1ab/nsp2 | 405 | M405I | atG | atC | 1 | 17 | B.1 | 0.000009 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 16 | 16 | B.1.177 | 0.000211 |
ORF1ab/nsp2 | 405 | M405I | atG | atT | 15 | 15 | AY.1 | 0.005936 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 15 | 15 | AY.15 | 0.033333 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 15 | 15 | AY.9.1 | 0.001256 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 12 | 15 | B.1.1 | 0.000218 |
ORF1ab/nsp2 | 405 | M405I | atG | atT | 2 | 15 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 405 | M405I | atG | atC | 1 | 15 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 14 | 14 | AY.4 | 0.000022 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ctg | 14 | 14 | B.1.2 | 0.000123 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 14 | 14 | B.1.617.2 | 0.000053 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 11 | 11 | AY.119 | 0.000388 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 10 | 10 | AY.25 | 0.00006 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ctg | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 9 | 9 | AY.23 | 0.000628 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 7 | 9 | AY.39 | 0.000173 |
ORF1ab/nsp2 | 405 | M405I | atG | atT | 2 | 9 | AY.39 | 0.000049 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ctg | 9 | 9 | B.1.617.2 | 0.000034 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 8 | 8 | P.1 | 0.000126 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ctg | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 6 | 6 | B.1.2 | 0.000053 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 6 | 6 | C.36 | 0.005464 |
ORF1ab/nsp2 | 405 | M405R | aTg | aGg | 5 | 5 | All | 0.000001 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 5 | 5 | AY.4 | 0.000008 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp2 | 405 | M405K | aTg | aAg | 3 | 4 | All | 0.000001 |
ORF1ab/nsp2 | 405 | M405K | aTG | aAA | 1 | 4 | All | 0 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ctg | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 4 | 4 | AY.4.2 | 0.000087 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 4 | 4 | B.1.1.317 | 0.001647 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 4 | 4 | B.1.214.2 | 0.002398 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp2 | 405 | M405I | atG | atT | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp2 | 405 | M405del2 | ATg | --g | 3 | 3 | All | 0.000001 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ctg | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 3 | 3 | AY.20 | 0.000117 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 3 | 3 | AY.67 | 0.001393 |
ORF1ab/nsp2 | 405 | M405I | atG | atT | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 3 | 3 | B.1.177.44 | 0.001557 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 3 | 3 | B.1.234 | 0.000396 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ctg | 3 | 3 | P.1.17 | 0.000485 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ctg | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ctg | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 405 | M405I | atG | atT | 1 | 2 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 2 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ttg | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ctg | 2 | 2 | AY.5 | 0.000041 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 2 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 405 | M405I | atG | atT | 1 | 2 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 2 | 2 | B.1.1.302 | 0.004149 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 2 | 2 | B.1.1.371 | 0.020833 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 405 | M405I | atG | atT | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 2 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp2 | 405 | M405I | atG | atT | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 2 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ctg | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 2 | 2 | B.1.618 | 0.008065 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 2 | 2 | B.1.629 | 0.026667 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ctg | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ttg | 1 | 2 | D.2 | 0.000075 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ctg | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | AD.2.1 | 0.045455 |
ORF1ab/nsp2 | 405 | M405C | ATG | TGT | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ctg | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ctg | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | AY.19 | 0.00114 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | AY.39.2 | 0.001541 |
ORF1ab/nsp2 | 405 | M405K | aTg | aAg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 405 | M405R | aTg | aGg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 405 | M405del2 | ATg | --g | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 405 | M405K | aTG | aAA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ctg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 405 | M405K | aTg | aAg | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 405 | M405R | aTg | aGg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ctg | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 405 | M405I | atG | atT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 405 | M405I | atG | atT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ctg | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 405 | M405R | aTg | aGg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 405 | M405del2 | ATg | --g | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ctg | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp2 | 405 | M405I | atG | atC | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | B.1.1.370 | 0.012658 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 405 | M405I | atG | atT | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | B.1.160.12 | 0.00641 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 405 | M405del2 | ATg | --g | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp2 | 405 | M405R | aTg | aGg | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | B.1.192 | 0.009259 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 405 | M405I | atG | atT | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | B.1.569 | 0.014493 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp2 | 405 | M405T | aTg | aCg | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 405 | M405C | ATG | TGT | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | C.30.1 | 0.006711 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 405 | M405K | aTg | aAg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 405 | M405del | ATG | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 405 | M405L | Atg | Ctg | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 405 | M405R | aTg | aGg | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 405 | M405I | atG | atA | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp2 | 405 | M405V | Atg | Gtg | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 405 | M405I | atG | atT | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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