CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 4 | R4C | R184C | nonsyn | Cgc | Tgc | 5872 | 5870 | 0.999659 | 815-817 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 5870 | 5872 | All | 0.001123 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1372 | 1372 | B.1.1.7 | 0.001228 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 978 | 978 | AY.4 | 0.001522 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 407 | 407 | B.1.617.2 | 0.001533 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 278 | 278 | AY.44 | 0.001692 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 165 | 165 | AY.43 | 0.000731 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 163 | 163 | AY.102 | 0.004322 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 129 | 129 | B.1.1.225 | 0.928058 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 113 | 113 | AY.34 | 0.010957 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 110 | 110 | B.1.177 | 0.001448 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 89 | 89 | AY.103 | 0.000553 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 89 | 89 | AY.14 | 0.007833 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 85 | 85 | AY.5 | 0.001755 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 77 | 77 | B.1.1 | 0.001397 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 71 | 71 | B.1.629 | 0.946667 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 70 | 70 | AY.39 | 0.00173 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 70 | 70 | B.1.177.4 | 0.014774 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 70 | 70 | B.1.525 | 0.007921 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 64 | 64 | AY.3 | 0.000637 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 64 | 64 | B.1.596 | 0.005577 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 62 | 62 | B.1 | 0.000568 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 54 | 55 | AY.25 | 0.000325 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 52 | 52 | B.1.1.214 | 0.002884 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 50 | 50 | AY.9.2 | 0.001836 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 50 | 50 | P.1 | 0.000788 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 40 | 40 | B.1.160 | 0.001248 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 37 | 37 | AY.120.2.1 | 0.018435 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 37 | 37 | B.1.177.12 | 0.005613 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 37 | 37 | B.1.2 | 0.000326 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 31 | 31 | B.1.240 | 0.006682 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 29 | 29 | B.1.1.519 | 0.001152 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 26 | 26 | AY.26 | 0.000736 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 26 | 26 | AY.47 | 0.000809 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 24 | 24 | AY.33 | 0.001603 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 22 | 22 | AY.119 | 0.000777 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 21 | 21 | AY.20 | 0.000816 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 21 | 21 | B.1.221 | 0.001492 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 19 | 19 | B.1.526 | 0.000447 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 18 | 18 | AY.29 | 0.000284 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 18 | 18 | AY.98.1 | 0.000872 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 17 | 17 | B.1.621 | 0.001505 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 16 | 16 | AY.121 | 0.002165 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 16 | 16 | B.1.177.60 | 0.003495 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 15 | 15 | B.1.609 | 0.007191 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 14 | 14 | AY.107 | 0.006524 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 14 | 14 | B.1.351 | 0.000416 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 13 | 13 | AY.42 | 0.000523 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 13 | 13 | B.1.177.21 | 0.000994 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 12 | 12 | AY.120 | 0.000446 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 12 | 12 | AY.39.1 | 0.000475 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 11 | 11 | AY.4.2 | 0.000239 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 11 | 11 | AY.46 | 0.001145 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 11 | 11 | B.1.429 | 0.000259 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 10 | 10 | AY.118 | 0.000626 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 10 | 10 | AY.36 | 0.001482 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 10 | 10 | AY.69 | 0.001867 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 10 | 10 | AY.98 | 0.00079 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 10 | 10 | B.1.177.15 | 0.006309 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 9 | 9 | AY.117 | 0.000761 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 9 | 9 | AY.27 | 0.000582 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 9 | 9 | AY.7.1 | 0.001014 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 9 | 9 | AY.99.2 | 0.000829 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 9 | 9 | B.1.177.83 | 0.013333 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 8 | 8 | AY.3.1 | 0.000682 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 8 | 8 | AY.45 | 0.000973 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 8 | 8 | AY.9.1 | 0.00067 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 8 | 8 | Q.3 | 0.00116 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 7 | 7 | AY.100 | 0.000322 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 7 | 7 | AY.105 | 0.004502 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 7 | 7 | B.1.232 | 0.003761 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 6 | 6 | AY.111 | 0.001099 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 6 | 6 | AY.40 | 0.005786 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 6 | 6 | AY.6 | 0.000247 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 6 | 6 | B | 0.000767 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 6 | 6 | B.1.258 | 0.000399 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 6 | 6 | B.1.258.17 | 0.000624 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 6 | 6 | P.1.7 | 0.001916 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 5 | 5 | AY.23 | 0.000349 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 5 | 5 | AY.54 | 0.000477 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 5 | 5 | AY.64 | 0.002976 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 5 | 5 | AY.67 | 0.002321 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 5 | 5 | AY.82 | 0.006784 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 5 | 5 | B.1.1.217 | 0.018182 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 5 | 5 | B.1.1.311 | 0.001791 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 5 | 5 | B.1.1.517 | 0.034014 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 5 | 5 | B.1.177.67 | 0.038168 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 5 | 5 | B.1.396 | 0.003529 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 4 | 4 | AY.106 | 0.00134 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 4 | 4 | AY.4.1 | 0.00295 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 4 | 4 | AY.74 | 0.000463 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 4 | 4 | AY.84 | 0.00175 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 4 | 4 | AY.92 | 0.001149 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 4 | 4 | B.1.1.228 | 0.012195 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 4 | 4 | B.1.1.372 | 0.002755 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 4 | 4 | B.1.1.50 | 0.002716 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 4 | 4 | B.1.177.50 | 0.018779 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 4 | 4 | B.4 | 0.00883 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 3 | 3 | AY.29.1 | 0.000662 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 3 | 3 | AY.85 | 0.001282 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 3 | 3 | B.1.1.198 | 0.004405 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 3 | 3 | B.1.1.237 | 0.016216 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 3 | 3 | B.1.1.369 | 0.001339 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 3 | 3 | B.1.1.429 | 0.013825 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 3 | 3 | B.1.206 | 0.002447 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 3 | 3 | B.1.517 | 0.001281 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 3 | 3 | R.1 | 0.00027 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | A.2.5.1 | 0.009615 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | AW.1 | 0.006098 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | AY.34.1 | 0.00102 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | AY.59 | 0.001059 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.1.270 | 0.020619 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.1.416 | 0.00181 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.1.54 | 0.006042 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.1.57 | 0.022989 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.177.57 | 0.000562 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.177.7 | 0.00033 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.36.1 | 0.002281 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.389 | 0.002004 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.404 | 0.002604 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.619 | 0.001742 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.6.3 | 0.052632 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | B.6.6 | 0.001778 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AM.4 | 0.003571 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.155 | 0.071429 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.170 | 0.001247 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.174 | 0.003378 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.200 | 0.007463 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.241 | 0.00207 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.253 | 0.002506 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.39 | 0.00051 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.412 | 0.007634 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.1.74 | 0.00431 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.153 | 0.018868 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.177.41 | 0.0025 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.177.52 | 0.001757 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.192 | 0.009259 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.227 | 0.047619 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.393 | 0.028571 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.403 | 0.003268 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.405 | 0.012346 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.443 | 0.004673 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.558 | 0.004566 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.10 | 0.008264 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.4.7 | 0.010101 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | C.39 | 0.018868 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | W.1 | 0.008696 |
ORF1ab/nsp2 | 4 | R4C | Cgc | Tgc | 1 | 1 | Y.1 | 0.012821 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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