CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 395

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2395Q395RQ575RnonsyncAgcGg1554155411988-1990
ORF1ab/nsp2395Q395QQ575QsyncaGcaA21421411988-1990
ORF1ab/nsp2395Q395LQ575LnonsyncAgcTg15015011988-1990
ORF1ab/nsp2395Q395HQ575HnonsyncaGcaT1461440.9863011988-1990
ORF1ab/nsp2395Q395HQ575HnonsyncaGcaC14620.01369861988-1990
ORF1ab/nsp2395Q395delQ575deldelCAG---555511988-1990
ORF1ab/nsp2395Q395WQ575WnonsynCAgTGg161611988-1990
ORF1ab/nsp2395Q395KQ575KnonsynCagAag111111988-1990
ORF1ab/nsp2395Q395XQ575XnonsynCagTag1090.91988-1990
ORF1ab/nsp2395Q395XQ575XnonsynCAGTGA1010.11988-1990
ORF1ab/nsp2395Q395PQ575PnonsyncAgcCg760.8571431988-1990
ORF1ab/nsp2395Q395PQ575PnonsyncAGcCT710.1428571988-1990
ORF1ab/nsp2395Q395del1Q575del1delcaGca-2211988-1990
ORF1ab/nsp2395Q395EQ575EnonsynCagGag2211988-1990
ORF1ab/nsp2395Q395TQ575TnonsynCAgACg2211988-1990
ORF1ab/nsp2395Q395YQ575YnonsynCaGTaC1111988-1990

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2395Q395RcAgcGg15541554All0.000297
ORF1ab/nsp2395Q395RcAgcGg539539B.1.1.70.000483
ORF1ab/nsp2395Q395RcAgcGg361361B.1.6370.026379
ORF1ab/nsp2395Q395QcaGcaA214214All0.000041
ORF1ab/nsp2395Q395LcAgcTg150150All0.000029
ORF1ab/nsp2395Q395HcaGcaT144146All0.000028
ORF1ab/nsp2395Q395HcaGcaC2146All0
ORF1ab/nsp2395Q395RcAgcGg112112B.10.001026
ORF1ab/nsp2395Q395QcaGcaA8686B.1.3510.002556
ORF1ab/nsp2395Q395RcAgcGg6868AY.1030.000422
ORF1ab/nsp2395Q395LcAgcTg6565AY.1200.002417
ORF1ab/nsp2395Q395delCAG---5555All0.000011
ORF1ab/nsp2395Q395RcAgcGg4747B.1.617.20.000177
ORF1ab/nsp2395Q395RcAgcGg4545AY.5.30.015182
ORF1ab/nsp2395Q395QcaGcaA4242AY.140.003697
ORF1ab/nsp2395Q395RcAgcGg4242AY.50.000867
ORF1ab/nsp2395Q395LcAgcTg3434AY.390.00084
ORF1ab/nsp2395Q395RcAgcGg3333AY.40.000051
ORF1ab/nsp2395Q395HcaGcaT3333B.1.617.20.000124
ORF1ab/nsp2395Q395RcAgcGg2626B.1.36.310.045534
ORF1ab/nsp2395Q395RcAgcGg2525B.1.2980.052854
ORF1ab/nsp2395Q395RcAgcGg2424AY.980.001896
ORF1ab/nsp2395Q395LcAgcTg2323B.1.617.20.000087
ORF1ab/nsp2395Q395HcaGcaT2121B.1.3091
ORF1ab/nsp2395Q395WCAgTGg1616All0.000003
ORF1ab/nsp2395Q395WCAgTGg1616B.1.1.70.000014
ORF1ab/nsp2395Q395HcaGcaT1414AY.290.000221
ORF1ab/nsp2395Q395RcAgcGg1313P.10.000205
ORF1ab/nsp2395Q395QcaGcaA1212AY.40.000019
ORF1ab/nsp2395Q395HcaGcaT1212B.1.1.2940.01519
ORF1ab/nsp2395Q395KCagAag1111All0.000002
ORF1ab/nsp2395Q395QcaGcaA1111AY.1030.000068
ORF1ab/nsp2395Q395XCagTag910All0.000002
ORF1ab/nsp2395Q395XCAGTGA110All0
ORF1ab/nsp2395Q395delCAG---1010B.1.1.70.000009
ORF1ab/nsp2395Q395LcAgcTg99AY.1020.000239
ORF1ab/nsp2395Q395RcAgcGg99B.1.10.000163
ORF1ab/nsp2395Q395RcAgcGg99B.1.3990.017408
ORF1ab/nsp2395Q395KCagAag88AY.440.000049
ORF1ab/nsp2395Q395RcAgcGg88AY.9.10.00067
ORF1ab/nsp2395Q395QcaGcaA88B.1.1.70.000007
ORF1ab/nsp2395Q395RcAgcGg88C.370.000929
ORF1ab/nsp2395Q395PcAgcCg67All0.000001
ORF1ab/nsp2395Q395PcAGcCT17All0
ORF1ab/nsp2395Q395RcAgcGg77AY.440.000043
ORF1ab/nsp2395Q395RcAgcGg77B.1.1280.004447
ORF1ab/nsp2395Q395HcaGcaT66AY.1000.000276
ORF1ab/nsp2395Q395QcaGcaA66AY.4.20.00013
ORF1ab/nsp2395Q395RcAgcGg66AY.430.000027
ORF1ab/nsp2395Q395QcaGcaA66AY.440.000037
ORF1ab/nsp2395Q395RcAgcGg66AY.590.003178
ORF1ab/nsp2395Q395RcAgcGg66AY.730.003992
ORF1ab/nsp2395Q395RcAgcGg66B.1.1.5190.000238
ORF1ab/nsp2395Q395HcaGcaT56B.1.1.70.000004
ORF1ab/nsp2395Q395HcaGcaC16B.1.1.70.000001
ORF1ab/nsp2395Q395HcaGcaT66B.1.36.290.003104
ORF1ab/nsp2395Q395RcAgcGg55AY.250.00003
ORF1ab/nsp2395Q395QcaGcaA55AY.30.00005
ORF1ab/nsp2395Q395RcAgcGg55AY.4.20.000108
ORF1ab/nsp2395Q395HcaGcaT55AY.430.000022
ORF1ab/nsp2395Q395delCAG---55B.10.000046
ORF1ab/nsp2395Q395RcAgcGg55B.1.1.1340.056818
ORF1ab/nsp2395Q395RcAgcGg55B.1.4290.000118
ORF1ab/nsp2395Q395RcAgcGg44AD.20.000876
ORF1ab/nsp2395Q395RcAgcGg44AY.1170.000338
ORF1ab/nsp2395Q395RcAgcGg44AY.1180.000251
ORF1ab/nsp2395Q395RcAgcGg44AY.350.000932
ORF1ab/nsp2395Q395HcaGcaT44AY.50.000083
ORF1ab/nsp2395Q395XCagTag44B.10.000037
ORF1ab/nsp2395Q395RcAgcGg44B.1.1.4170.010811
ORF1ab/nsp2395Q395HcaGcaT44B.1.1770.000053
ORF1ab/nsp2395Q395RcAgcGg44B.1.20.000035
ORF1ab/nsp2395Q395RcAgcGg44B.1.360.000584
ORF1ab/nsp2395Q395QcaGcaA44B.1.617.20.000015
ORF1ab/nsp2395Q395RcAgcGg44Q.80.00066
ORF1ab/nsp2395Q395HcaGcaT33AY.1200.000112
ORF1ab/nsp2395Q395RcAgcGg33AY.16.10.00141
ORF1ab/nsp2395Q395RcAgcGg33AY.260.000085
ORF1ab/nsp2395Q395RcAgcGg33AY.360.000445
ORF1ab/nsp2395Q395RcAgcGg33AY.390.000074
ORF1ab/nsp2395Q395HcaGcaT23AY.40.000003
ORF1ab/nsp2395Q395HcaGcaC13AY.40.000002
ORF1ab/nsp2395Q395LcAgcTg33AY.440.000018
ORF1ab/nsp2395Q395QcaGcaA33AY.46.40.000494
ORF1ab/nsp2395Q395RcAgcGg33AY.470.000093
ORF1ab/nsp2395Q395LcAgcTg33AY.50.000062
ORF1ab/nsp2395Q395RcAgcGg33AY.700.000626
ORF1ab/nsp2395Q395RcAgcGg33B.1.1.2220.000612
ORF1ab/nsp2395Q395delCAG---33B.1.1.330.001263
ORF1ab/nsp2395Q395delCAG---33B.1.1.3480.002389
ORF1ab/nsp2395Q395RcAgcGg33B.1.1600.000094
ORF1ab/nsp2395Q395delCAG---33B.1.1770.00004
ORF1ab/nsp2395Q395QcaGcaA33B.1.1770.00004
ORF1ab/nsp2395Q395RcAgcGg33B.1.4270.000151
ORF1ab/nsp2395Q395HcaGcaT33B.1.5960.000261
ORF1ab/nsp2395Q395LcAgcTg33P.10.000047
ORF1ab/nsp2395Q395HcaGcaT33P.10.000047
ORF1ab/nsp2395Q395RcAgcGg22A.2.50.000998
ORF1ab/nsp2395Q395del1caGca-22All0
ORF1ab/nsp2395Q395TCAgACg22All0
ORF1ab/nsp2395Q395ECagGag22All0
ORF1ab/nsp2395Q395RcAgcGg22AY.1020.000053
ORF1ab/nsp2395Q395QcaGcaA22AY.1180.000125
ORF1ab/nsp2395Q395RcAgcGg22AY.1210.000271
ORF1ab/nsp2395Q395RcAgcGg22AY.190.002281
ORF1ab/nsp2395Q395RcAgcGg22AY.200.000078
ORF1ab/nsp2395Q395HcaGcaT22AY.230.000139
ORF1ab/nsp2395Q395LcAgcTg22AY.230.000139
ORF1ab/nsp2395Q395RcAgcGg22AY.290.000032
ORF1ab/nsp2395Q395RcAgcGg22AY.30.00002
ORF1ab/nsp2395Q395LcAgcTg22AY.3.10.000171
ORF1ab/nsp2395Q395PcAgcCg22AY.39.10.000079
ORF1ab/nsp2395Q395RcAgcGg22AY.39.10.000079
ORF1ab/nsp2395Q395HcaGcaT22AY.39.10.000079
ORF1ab/nsp2395Q395delCAG---22AY.40.000003
ORF1ab/nsp2395Q395delCAG---22AY.4.50.000215
ORF1ab/nsp2395Q395QcaGcaA22AY.430.000009
ORF1ab/nsp2395Q395QcaGcaA22AY.470.000062
ORF1ab/nsp2395Q395PcAGcCT12AY.50.000021
ORF1ab/nsp2395Q395PcAgcCg12AY.50.000021
ORF1ab/nsp2395Q395RcAgcGg22AY.9.20.000073
ORF1ab/nsp2395Q395RcAgcGg22B.1.1.3170.000823
ORF1ab/nsp2395Q395LcAgcTg22B.1.1.70.000002
ORF1ab/nsp2395Q395RcAgcGg22B.1.2800.014286
ORF1ab/nsp2395Q395RcAgcGg22B.1.3510.000059
ORF1ab/nsp2395Q395delCAG---22B.1.4240.016129
ORF1ab/nsp2395Q395HcaGcaT22B.1.4700.002809
ORF1ab/nsp2395Q395HcaGcaT22B.1.617.10.000258
ORF1ab/nsp2395Q395delCAG---22N.60.014184
ORF1ab/nsp2395Q395QcaGcaA22P.20.000373
ORF1ab/nsp2395Q395delCAG---22P.20.000373
ORF1ab/nsp2395Q395delCAG---22Q.10.000253
ORF1ab/nsp2395Q395HcaGcaT22R.10.00018
ORF1ab/nsp2395Q395QcaGcaA11A.2.50.000499
ORF1ab/nsp2395Q395YCaGTaC11All0
ORF1ab/nsp2395Q395RcAgcGg11AY.100.00053
ORF1ab/nsp2395Q395HcaGcaT11AY.1020.000027
ORF1ab/nsp2395Q395delCAG---11AY.1030.000006
ORF1ab/nsp2395Q395QcaGcaA11AY.1050.000643
ORF1ab/nsp2395Q395RcAgcGg11AY.1050.000643
ORF1ab/nsp2395Q395RcAgcGg11AY.1060.000335
ORF1ab/nsp2395Q395RcAgcGg11AY.1100.000113
ORF1ab/nsp2395Q395delCAG---11AY.1110.000183
ORF1ab/nsp2395Q395RcAgcGg11AY.1110.000183
ORF1ab/nsp2395Q395LcAgcTg11AY.1170.000085
ORF1ab/nsp2395Q395QcaGcaA11AY.1190.000035
ORF1ab/nsp2395Q395RcAgcGg11AY.120.000316
ORF1ab/nsp2395Q395delCAG---11AY.16.10.00047
ORF1ab/nsp2395Q395RcAgcGg11AY.230.00007
ORF1ab/nsp2395Q395delCAG---11AY.250.000006
ORF1ab/nsp2395Q395QcaGcaA11AY.250.000006
ORF1ab/nsp2395Q395PcAgcCg11AY.250.000006
ORF1ab/nsp2395Q395QcaGcaA11AY.260.000028
ORF1ab/nsp2395Q395QcaGcaA11AY.290.000016
ORF1ab/nsp2395Q395RcAgcGg11AY.3.10.000085
ORF1ab/nsp2395Q395RcAgcGg11AY.330.000067
ORF1ab/nsp2395Q395HcaGcaT11AY.340.000097
ORF1ab/nsp2395Q395PcAgcCg11AY.40.000002
ORF1ab/nsp2395Q395RcAgcGg11AY.420.00004
ORF1ab/nsp2395Q395XCAGTGA11AY.440.000006
ORF1ab/nsp2395Q395HcaGcaT11AY.440.000006
ORF1ab/nsp2395Q395RcAgcGg11AY.450.000122
ORF1ab/nsp2395Q395RcAgcGg11AY.46.60.000072
ORF1ab/nsp2395Q395RcAgcGg11AY.480.000465
ORF1ab/nsp2395Q395QcaGcaA11AY.50.000021
ORF1ab/nsp2395Q395RcAgcGg11AY.5.40.000277
ORF1ab/nsp2395Q395QcaGcaA11AY.520.000814
ORF1ab/nsp2395Q395delCAG---11AY.540.000095
ORF1ab/nsp2395Q395QcaGcaA11AY.550.000917
ORF1ab/nsp2395Q395RcAgcGg11AY.570.000656
ORF1ab/nsp2395Q395RcAgcGg11AY.740.000116
ORF1ab/nsp2395Q395RcAgcGg11AY.750.000056
ORF1ab/nsp2395Q395TCAgACg11AY.750.000056
ORF1ab/nsp2395Q395delCAG---11AY.75.10.00018
ORF1ab/nsp2395Q395QcaGcaA11AY.770.001127
ORF1ab/nsp2395Q395QcaGcaA11AY.790.001211
ORF1ab/nsp2395Q395RcAgcGg11AY.890.004902
ORF1ab/nsp2395Q395delCAG---11AY.9.20.000037
ORF1ab/nsp2395Q395QcaGcaA11AY.9.20.000037
ORF1ab/nsp2395Q395HcaGcaT11AY.98.10.000048
ORF1ab/nsp2395Q395LcAgcTg11AY.99.20.000092
ORF1ab/nsp2395Q395LcAgcTg11B.10.000009
ORF1ab/nsp2395Q395HcaGcaT11B.10.000009
ORF1ab/nsp2395Q395QcaGcaA11B.10.000009
ORF1ab/nsp2395Q395del1caGca-11B.10.000009
ORF1ab/nsp2395Q395KCagAag11B.1.10.000018
ORF1ab/nsp2395Q395XCagTag11B.1.10.000018
ORF1ab/nsp2395Q395delCAG---11B.1.10.000018
ORF1ab/nsp2395Q395QcaGcaA11B.1.1.2140.000055
ORF1ab/nsp2395Q395HcaGcaT11B.1.1.280.000311
ORF1ab/nsp2395Q395RcAgcGg11B.1.1.330.000421
ORF1ab/nsp2395Q395del1caGca-11B.1.1.3720.000689
ORF1ab/nsp2395Q395ECagGag11B.1.1.4090.002833
ORF1ab/nsp2395Q395delCAG---11B.1.1.4160.000905
ORF1ab/nsp2395Q395XCagTag11B.1.1.4200.001006
ORF1ab/nsp2395Q395KCagAag11B.1.1.4650.015625
ORF1ab/nsp2395Q395RcAgcGg11B.1.1.500.000679
ORF1ab/nsp2395Q395QcaGcaA11B.1.1.5190.00004
ORF1ab/nsp2395Q395HcaGcaT11B.1.1.5190.00004
ORF1ab/nsp2395Q395RcAgcGg11B.1.1.5230.001563
ORF1ab/nsp2395Q395RcAgcGg11B.1.1.540.003021
ORF1ab/nsp2395Q395RcAgcGg11B.1.1.630.000386
ORF1ab/nsp2395Q395KCagAag11B.1.1.70.000001
ORF1ab/nsp2395Q395YCaGTaC11B.1.1.70.000001
ORF1ab/nsp2395Q395QcaGcaA11B.1.1.700.000341
ORF1ab/nsp2395Q395XCagTag11B.1.1600.000031
ORF1ab/nsp2395Q395RcAgcGg11B.1.1770.000013
ORF1ab/nsp2395Q395RcAgcGg11B.1.177.100.000878
ORF1ab/nsp2395Q395delCAG---11B.1.177.120.000152
ORF1ab/nsp2395Q395delCAG---11B.1.177.180.00116
ORF1ab/nsp2395Q395RcAgcGg11B.1.177.810.000189
ORF1ab/nsp2395Q395delCAG---11B.1.1790.003759
ORF1ab/nsp2395Q395QcaGcaA11B.1.20.000009
ORF1ab/nsp2395Q395RcAgcGg11B.1.2100.002132
ORF1ab/nsp2395Q395HcaGcaT11B.1.2210.000071
ORF1ab/nsp2395Q395RcAgcGg11B.1.2210.000071
ORF1ab/nsp2395Q395RcAgcGg11B.1.2340.000132
ORF1ab/nsp2395Q395delCAG---11B.1.2340.000132
ORF1ab/nsp2395Q395RcAgcGg11B.1.2430.00007
ORF1ab/nsp2395Q395RcAgcGg11B.1.2470.014925
ORF1ab/nsp2395Q395HcaGcaT11B.1.258.170.000104
ORF1ab/nsp2395Q395RcAgcGg11B.1.258.190.007092
ORF1ab/nsp2395Q395HcaGcaT11B.1.2790.000514
ORF1ab/nsp2395Q395QcaGcaA11B.1.36.100.004785
ORF1ab/nsp2395Q395RcAgcGg11B.1.36.160.001425
ORF1ab/nsp2395Q395XCagTag11B.1.3620.001541
ORF1ab/nsp2395Q395delCAG---11B.1.4290.000024
ORF1ab/nsp2395Q395delCAG---11B.1.4390.005917
ORF1ab/nsp2395Q395RcAgcGg11B.1.4590.004082
ORF1ab/nsp2395Q395RcAgcGg11B.1.4990.00105
ORF1ab/nsp2395Q395QcaGcaA11B.1.5250.000113
ORF1ab/nsp2395Q395RcAgcGg11B.1.5260.000024
ORF1ab/nsp2395Q395delCAG---11B.1.5610.000397
ORF1ab/nsp2395Q395HcaGcaT11B.1.564.10.001577
ORF1ab/nsp2395Q395HcaGcaT11B.1.5770.000687
ORF1ab/nsp2395Q395ECagGag11B.1.5900.004545
ORF1ab/nsp2395Q395PcAgcCg11B.1.617.10.000129
ORF1ab/nsp2395Q395delCAG---11B.1.617.20.000004
ORF1ab/nsp2395Q395TCAgACg11B.1.617.20.000004
ORF1ab/nsp2395Q395RcAgcGg11B.1.621.10.000506
ORF1ab/nsp2395Q395delCAG---11B.570.015152
ORF1ab/nsp2395Q395RcAgcGg11C.36.30.000567
ORF1ab/nsp2395Q395XCagTag11D.20.000075
ORF1ab/nsp2395Q395RcAgcGg11D.20.000075
ORF1ab/nsp2395Q395RcAgcGg11N.50.001767
ORF1ab/nsp2395Q395QcaGcaA11P.10.000016
ORF1ab/nsp2395Q395delCAG---11P.10.000016
ORF1ab/nsp2395Q395RcAgcGg11P.1.150.000232
ORF1ab/nsp2395Q395RcAgcGg11P.1.170.000162
ORF1ab/nsp2395Q395RcAgcGg11P.20.000187
ORF1ab/nsp2395Q395HcaGcaT11P.20.000187
ORF1ab/nsp2395Q395RcAgcGg11P.30.001595
ORF1ab/nsp2395Q395LcAgcTg11R.10.00009