CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 395 | Q395R | Q575R | nonsyn | cAg | cGg | 1554 | 1554 | 1 | 1988-1990 |
ORF1ab/nsp2 | 395 | Q395Q | Q575Q | syn | caG | caA | 214 | 214 | 1 | 1988-1990 |
ORF1ab/nsp2 | 395 | Q395L | Q575L | nonsyn | cAg | cTg | 150 | 150 | 1 | 1988-1990 |
ORF1ab/nsp2 | 395 | Q395H | Q575H | nonsyn | caG | caT | 146 | 144 | 0.986301 | 1988-1990 |
ORF1ab/nsp2 | 395 | Q395H | Q575H | nonsyn | caG | caC | 146 | 2 | 0.0136986 | 1988-1990 |
ORF1ab/nsp2 | 395 | Q395del | Q575del | del | CAG | --- | 55 | 55 | 1 | 1988-1990 |
ORF1ab/nsp2 | 395 | Q395W | Q575W | nonsyn | CAg | TGg | 16 | 16 | 1 | 1988-1990 |
ORF1ab/nsp2 | 395 | Q395K | Q575K | nonsyn | Cag | Aag | 11 | 11 | 1 | 1988-1990 |
ORF1ab/nsp2 | 395 | Q395X | Q575X | nonsyn | Cag | Tag | 10 | 9 | 0.9 | 1988-1990 |
ORF1ab/nsp2 | 395 | Q395X | Q575X | nonsyn | CAG | TGA | 10 | 1 | 0.1 | 1988-1990 |
ORF1ab/nsp2 | 395 | Q395P | Q575P | nonsyn | cAg | cCg | 7 | 6 | 0.857143 | 1988-1990 |
ORF1ab/nsp2 | 395 | Q395P | Q575P | nonsyn | cAG | cCT | 7 | 1 | 0.142857 | 1988-1990 |
ORF1ab/nsp2 | 395 | Q395del1 | Q575del1 | del | caG | ca- | 2 | 2 | 1 | 1988-1990 |
ORF1ab/nsp2 | 395 | Q395E | Q575E | nonsyn | Cag | Gag | 2 | 2 | 1 | 1988-1990 |
ORF1ab/nsp2 | 395 | Q395T | Q575T | nonsyn | CAg | ACg | 2 | 2 | 1 | 1988-1990 |
ORF1ab/nsp2 | 395 | Q395Y | Q575Y | nonsyn | CaG | TaC | 1 | 1 | 1 | 1988-1990 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1554 | 1554 | All | 0.000297 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 539 | 539 | B.1.1.7 | 0.000483 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 361 | 361 | B.1.637 | 0.026379 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 214 | 214 | All | 0.000041 |
ORF1ab/nsp2 | 395 | Q395L | cAg | cTg | 150 | 150 | All | 0.000029 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 144 | 146 | All | 0.000028 |
ORF1ab/nsp2 | 395 | Q395H | caG | caC | 2 | 146 | All | 0 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 112 | 112 | B.1 | 0.001026 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 86 | 86 | B.1.351 | 0.002556 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 68 | 68 | AY.103 | 0.000422 |
ORF1ab/nsp2 | 395 | Q395L | cAg | cTg | 65 | 65 | AY.120 | 0.002417 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 55 | 55 | All | 0.000011 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 47 | 47 | B.1.617.2 | 0.000177 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 45 | 45 | AY.5.3 | 0.015182 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 42 | 42 | AY.14 | 0.003697 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 42 | 42 | AY.5 | 0.000867 |
ORF1ab/nsp2 | 395 | Q395L | cAg | cTg | 34 | 34 | AY.39 | 0.00084 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 33 | 33 | AY.4 | 0.000051 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 33 | 33 | B.1.617.2 | 0.000124 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 26 | 26 | B.1.36.31 | 0.045534 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 25 | 25 | B.1.298 | 0.052854 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 24 | 24 | AY.98 | 0.001896 |
ORF1ab/nsp2 | 395 | Q395L | cAg | cTg | 23 | 23 | B.1.617.2 | 0.000087 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 21 | 21 | B.1.309 | 1 |
ORF1ab/nsp2 | 395 | Q395W | CAg | TGg | 16 | 16 | All | 0.000003 |
ORF1ab/nsp2 | 395 | Q395W | CAg | TGg | 16 | 16 | B.1.1.7 | 0.000014 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 14 | 14 | AY.29 | 0.000221 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 13 | 13 | P.1 | 0.000205 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 12 | 12 | AY.4 | 0.000019 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 12 | 12 | B.1.1.294 | 0.01519 |
ORF1ab/nsp2 | 395 | Q395K | Cag | Aag | 11 | 11 | All | 0.000002 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 11 | 11 | AY.103 | 0.000068 |
ORF1ab/nsp2 | 395 | Q395X | Cag | Tag | 9 | 10 | All | 0.000002 |
ORF1ab/nsp2 | 395 | Q395X | CAG | TGA | 1 | 10 | All | 0 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp2 | 395 | Q395L | cAg | cTg | 9 | 9 | AY.102 | 0.000239 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 9 | 9 | B.1.1 | 0.000163 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 9 | 9 | B.1.399 | 0.017408 |
ORF1ab/nsp2 | 395 | Q395K | Cag | Aag | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 8 | 8 | AY.9.1 | 0.00067 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 8 | 8 | C.37 | 0.000929 |
ORF1ab/nsp2 | 395 | Q395P | cAg | cCg | 6 | 7 | All | 0.000001 |
ORF1ab/nsp2 | 395 | Q395P | cAG | cCT | 1 | 7 | All | 0 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 7 | 7 | AY.44 | 0.000043 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 7 | 7 | B.1.128 | 0.004447 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 6 | 6 | AY.100 | 0.000276 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 6 | 6 | AY.4.2 | 0.00013 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 6 | 6 | AY.44 | 0.000037 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 6 | 6 | AY.59 | 0.003178 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 6 | 6 | AY.73 | 0.003992 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 6 | 6 | B.1.1.519 | 0.000238 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 5 | 6 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 395 | Q395H | caG | caC | 1 | 6 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 6 | 6 | B.1.36.29 | 0.003104 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 5 | 5 | B.1.1.134 | 0.056818 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 4 | 4 | AD.2 | 0.000876 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 4 | 4 | AY.35 | 0.000932 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 4 | 4 | AY.5 | 0.000083 |
ORF1ab/nsp2 | 395 | Q395X | Cag | Tag | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 4 | 4 | B.1.1.417 | 0.010811 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 2 | 3 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 395 | Q395H | caG | caC | 1 | 3 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 395 | Q395L | cAg | cTg | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 3 | 3 | AY.46.4 | 0.000494 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp2 | 395 | Q395L | cAg | cTg | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 3 | 3 | B.1.1.33 | 0.001263 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 3 | 3 | B.1.160 | 0.000094 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 3 | 3 | B.1.427 | 0.000151 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp2 | 395 | Q395L | cAg | cTg | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 3 | 3 | P.1 | 0.000047 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp2 | 395 | Q395del1 | caG | ca- | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 395 | Q395T | CAg | ACg | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 395 | Q395E | Cag | Gag | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp2 | 395 | Q395L | cAg | cTg | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 395 | Q395L | cAg | cTg | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp2 | 395 | Q395P | cAg | cCg | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 395 | Q395P | cAG | cCT | 1 | 2 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 395 | Q395P | cAg | cCg | 1 | 2 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp2 | 395 | Q395L | cAg | cTg | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 2 | 2 | B.1.280 | 0.014286 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 2 | 2 | B.1.470 | 0.002809 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 2 | 2 | Q.1 | 0.000253 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp2 | 395 | Q395Y | CaG | TaC | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 395 | Q395L | cAg | cTg | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 395 | Q395P | cAg | cCg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 395 | Q395P | cAg | cCg | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 395 | Q395X | CAG | TGA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 395 | Q395T | CAg | ACg | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 395 | Q395L | cAg | cTg | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 395 | Q395L | cAg | cTg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 395 | Q395del1 | caG | ca- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 395 | Q395K | Cag | Aag | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 395 | Q395X | Cag | Tag | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp2 | 395 | Q395del1 | caG | ca- | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp2 | 395 | Q395E | Cag | Gag | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 395 | Q395X | Cag | Tag | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp2 | 395 | Q395K | Cag | Aag | 1 | 1 | B.1.1.465 | 0.015625 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp2 | 395 | Q395K | Cag | Aag | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 395 | Q395Y | CaG | TaC | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 395 | Q395X | Cag | Tag | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | B.1.247 | 0.014925 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | B.1.258.19 | 0.007092 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp2 | 395 | Q395X | Cag | Tag | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | B.1.499 | 0.00105 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp2 | 395 | Q395E | Cag | Gag | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp2 | 395 | Q395P | cAg | cCg | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 395 | Q395T | CAg | ACg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 395 | Q395X | Cag | Tag | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp2 | 395 | Q395Q | caG | caA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 395 | Q395del | CAG | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 395 | Q395H | caG | caT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 395 | Q395R | cAg | cGg | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp2 | 395 | Q395L | cAg | cTg | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|