CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 394 & Codon = Gca

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2394S394AS574AnonsynTcaGca2032010.9901481985-1987

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2394S394ATcaGca201203All0.000038
ORF1ab/nsp2394S394ATcaGca109109AY.40.00017
ORF1ab/nsp2394S394ATcaGca5353B.1.258.110.021007
ORF1ab/nsp2394S394ATcaGca2121AY.430.000093
ORF1ab/nsp2394S394ATcaGca56B.1.617.20.000019
ORF1ab/nsp2394S394ATcaGca55P.10.000079
ORF1ab/nsp2394S394ATcaGca11AY.390.000025
ORF1ab/nsp2394S394ATcaGca11AY.50.000021
ORF1ab/nsp2394S394ATcaGca11AY.540.000095
ORF1ab/nsp2394S394ATcaGca11B.1.10.000018
ORF1ab/nsp2394S394ATcaGca11B.1.1.4120.007634
ORF1ab/nsp2394S394ATcaGca11B.1.1.5190.00004
ORF1ab/nsp2394S394ATcaGca11B.1.1.70.000001
ORF1ab/nsp2394S394ATcaGca11B.1.2210.000071

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.