CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 394

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2394S394SS574SsyntcAtcG599859930.9991661985-1987
ORF1ab/nsp2394S394SS574SsyntcAtcT599840.0006668891985-1987
ORF1ab/nsp2394S394SS574SsyntcAtcC599810.0001667221985-1987
ORF1ab/nsp2394S394AS574AnonsynTcaGca2032010.9901481985-1987
ORF1ab/nsp2394S394AS574AnonsynTcAGcG20320.009852221985-1987
ORF1ab/nsp2394S394delS574deldelTCA---545411985-1987
ORF1ab/nsp2394S394XS574XnonsyntCatAa151511985-1987
ORF1ab/nsp2394S394LS574LnonsyntCatTa141411985-1987
ORF1ab/nsp2394S394TS574TnonsynTcaAca7711985-1987
ORF1ab/nsp2394S394PS574PnonsynTcaCca2211985-1987
ORF1ab/nsp2394S394FS574FnonsyntCAtTT1111985-1987
ORF1ab/nsp2394S394del1S574del1deltcAtc-1111985-1987

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2394S394StcAtcG59935998All0.001146
ORF1ab/nsp2394S394StcAtcT45998All0.000001
ORF1ab/nsp2394S394StcAtcC15998All0
ORF1ab/nsp2394S394StcAtcG47134713B.1.177.40.994724
ORF1ab/nsp2394S394StcAtcG739739B.1.1770.009731
ORF1ab/nsp2394S394StcAtcG220220B.1.177.21
ORF1ab/nsp2394S394ATcaGca201203All0.000038
ORF1ab/nsp2394S394ATcAGcG2203All0
ORF1ab/nsp2394S394StcAtcG119119B.1.177.30.908397
ORF1ab/nsp2394S394ATcaGca109109AY.40.00017
ORF1ab/nsp2394S394delTCA---5454All0.00001
ORF1ab/nsp2394S394ATcaGca5353B.1.258.110.021007
ORF1ab/nsp2394S394StcAtcG3839AY.40.000059
ORF1ab/nsp2394S394StcAtcT139AY.40.000002
ORF1ab/nsp2394S394StcAtcG2930B.1.1.70.000026
ORF1ab/nsp2394S394StcAtcT130B.1.1.70.000001
ORF1ab/nsp2394S394StcAtcG2323AY.30.000229
ORF1ab/nsp2394S394StcAtcG2223B.10.000202
ORF1ab/nsp2394S394StcAtcT123B.10.000009
ORF1ab/nsp2394S394ATcaGca2121AY.430.000093
ORF1ab/nsp2394S394XtCatAa1515All0.000003
ORF1ab/nsp2394S394LtCatTa1414All0.000003
ORF1ab/nsp2394S394delTCA---1010B.1.1.70.000009
ORF1ab/nsp2394S394StcAtcG99AY.430.00004
ORF1ab/nsp2394S394TTcaAca77All0.000001
ORF1ab/nsp2394S394StcAtcG77AY.1200.00026
ORF1ab/nsp2394S394XtCatAa77B.10.000064
ORF1ab/nsp2394S394StcAtcG77B.1.10.000127
ORF1ab/nsp2394S394StcAtcG77B.1.1.5190.000278
ORF1ab/nsp2394S394StcAtcG77B.1.177.350.004838
ORF1ab/nsp2394S394StcAtcG66B.1.6030.06383
ORF1ab/nsp2394S394ATcaGca56B.1.617.20.000019
ORF1ab/nsp2394S394ATcAGcG16B.1.617.20.000004
ORF1ab/nsp2394S394delTCA---55B.10.000046
ORF1ab/nsp2394S394LtCatTa55B.1.1.70.000004
ORF1ab/nsp2394S394ATcaGca55P.10.000079
ORF1ab/nsp2394S394StcAtcG44AY.1030.000025
ORF1ab/nsp2394S394TTcaAca44B.1.1.70.000004
ORF1ab/nsp2394S394LtCatTa33B.10.000027
ORF1ab/nsp2394S394delTCA---33B.1.1.330.001263
ORF1ab/nsp2394S394delTCA---33B.1.1.3480.002389
ORF1ab/nsp2394S394PTcaCca22All0
ORF1ab/nsp2394S394StcAtcG22AY.290.000032
ORF1ab/nsp2394S394delTCA---22AY.40.000003
ORF1ab/nsp2394S394delTCA---22AY.4.50.000215
ORF1ab/nsp2394S394StcAtcG22AY.440.000012
ORF1ab/nsp2394S394StcAtcG22AY.470.000062
ORF1ab/nsp2394S394StcAtcC12AY.50.000021
ORF1ab/nsp2394S394StcAtcG12AY.50.000021
ORF1ab/nsp2394S394StcAtcG22AY.60.000082
ORF1ab/nsp2394S394XtCatAa22B0.000256
ORF1ab/nsp2394S394LtCatTa22B.1.10.000036
ORF1ab/nsp2394S394PTcaCca22B.1.1.70.000002
ORF1ab/nsp2394S394delTCA---22B.1.1770.000026
ORF1ab/nsp2394S394StcAtcG22B.1.177.560.001335
ORF1ab/nsp2394S394StcAtcG22B.1.177.70.00033
ORF1ab/nsp2394S394StcAtcG22B.1.360.000292
ORF1ab/nsp2394S394delTCA---22B.1.4240.016129
ORF1ab/nsp2394S394StcAtcG22B.1.5250.000226
ORF1ab/nsp2394S394delTCA---22N.60.014184
ORF1ab/nsp2394S394StcAtcG22P.1.150.000465
ORF1ab/nsp2394S394delTCA---22P.20.000373
ORF1ab/nsp2394S394delTCA---22Q.10.000253
ORF1ab/nsp2394S394LtCatTa11A0.000387
ORF1ab/nsp2394S394XtCatAa11A0.000387
ORF1ab/nsp2394S394FtCAtTT11All0
ORF1ab/nsp2394S394del1tcAtc-11All0
ORF1ab/nsp2394S394delTCA---11AY.1030.000006
ORF1ab/nsp2394S394delTCA---11AY.1110.000183
ORF1ab/nsp2394S394StcAtcG11AY.1170.000085
ORF1ab/nsp2394S394StcAtcG11AY.120.10.000321
ORF1ab/nsp2394S394delTCA---11AY.16.10.00047
ORF1ab/nsp2394S394StcAtcG11AY.250.000006
ORF1ab/nsp2394S394delTCA---11AY.250.000006
ORF1ab/nsp2394S394ATcaGca11AY.390.000025
ORF1ab/nsp2394S394StcAtcG11AY.4.20.000022
ORF1ab/nsp2394S394XtCatAa11AY.430.000004
ORF1ab/nsp2394S394del1tcAtc-11AY.440.000006
ORF1ab/nsp2394S394StcAtcG11AY.460.000104
ORF1ab/nsp2394S394TTcaAca11AY.470.000031
ORF1ab/nsp2394S394ATcaGca11AY.50.000021
ORF1ab/nsp2394S394XtCatAa11AY.520.000814
ORF1ab/nsp2394S394delTCA---11AY.540.000095
ORF1ab/nsp2394S394ATcaGca11AY.540.000095
ORF1ab/nsp2394S394LtCatTa11AY.650.000533
ORF1ab/nsp2394S394StcAtcG11AY.7.10.000113
ORF1ab/nsp2394S394StcAtcG11AY.740.000116
ORF1ab/nsp2394S394StcAtcG11AY.750.000056
ORF1ab/nsp2394S394ATcAGcG11AY.750.000056
ORF1ab/nsp2394S394LtCatTa11AY.750.000056
ORF1ab/nsp2394S394delTCA---11AY.75.10.00018
ORF1ab/nsp2394S394TTcaAca11AY.90.000068
ORF1ab/nsp2394S394delTCA---11AY.9.20.000037
ORF1ab/nsp2394S394StcAtcT11AY.980.000079
ORF1ab/nsp2394S394FtCAtTT11B.10.000009
ORF1ab/nsp2394S394delTCA---11B.1.10.000018
ORF1ab/nsp2394S394ATcaGca11B.1.10.000018
ORF1ab/nsp2394S394StcAtcG11B.1.1.2140.000055
ORF1ab/nsp2394S394StcAtcG11B.1.1.280.000311
ORF1ab/nsp2394S394StcAtcG11B.1.1.3150.008475
ORF1ab/nsp2394S394ATcaGca11B.1.1.4120.007634
ORF1ab/nsp2394S394delTCA---11B.1.1.4160.000905
ORF1ab/nsp2394S394ATcaGca11B.1.1.5190.00004
ORF1ab/nsp2394S394ATcaGca11B.1.1.70.000001
ORF1ab/nsp2394S394XtCatAa11B.1.1770.000013
ORF1ab/nsp2394S394delTCA---11B.1.177.120.000152
ORF1ab/nsp2394S394delTCA---11B.1.177.180.00116
ORF1ab/nsp2394S394StcAtcG11B.1.177.530.002392
ORF1ab/nsp2394S394StcAtcG11B.1.177.60.000977
ORF1ab/nsp2394S394StcAtcG11B.1.177.600.000218
ORF1ab/nsp2394S394delTCA---11B.1.1790.003759
ORF1ab/nsp2394S394LtCatTa11B.1.20.000009
ORF1ab/nsp2394S394ATcaGca11B.1.2210.000071
ORF1ab/nsp2394S394delTCA---11B.1.2340.000132
ORF1ab/nsp2394S394StcAtcG11B.1.2580.000067
ORF1ab/nsp2394S394XtCatAa11B.1.3010.005917
ORF1ab/nsp2394S394StcAtcG11B.1.3510.00003
ORF1ab/nsp2394S394StcAtcG11B.1.36.370.002778
ORF1ab/nsp2394S394StcAtcG11B.1.36.390.002217
ORF1ab/nsp2394S394delTCA---11B.1.4290.000024
ORF1ab/nsp2394S394delTCA---11B.1.4390.005917
ORF1ab/nsp2394S394delTCA---11B.1.5610.000397
ORF1ab/nsp2394S394StcAtcG11B.1.5750.000303
ORF1ab/nsp2394S394TTcaAca11B.1.617.20.000004
ORF1ab/nsp2394S394delTCA---11B.1.617.20.000004
ORF1ab/nsp2394S394XtCatAa11B.1.6230.000536
ORF1ab/nsp2394S394delTCA---11B.570.015152
ORF1ab/nsp2394S394StcAtcG11C.160.00106
ORF1ab/nsp2394S394StcAtcG11C.400.027778
ORF1ab/nsp2394S394StcAtcG11D.20.000075
ORF1ab/nsp2394S394StcAtcG11P.10.000016
ORF1ab/nsp2394S394delTCA---11P.10.000016
ORF1ab/nsp2394S394StcAtcG11Q.80.000165