CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 392

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2392G392EG572EnonsyngGagAa1267126711979-1981
ORF1ab/nsp2392G392GG572GsynggAggC5382760.5130111979-1981
ORF1ab/nsp2392G392GG572GsynggAggG5382190.4070631979-1981
ORF1ab/nsp2392G392GG572GsynggAggT538430.07992561979-1981
ORF1ab/nsp2392G392RG572RnonsynGgaAga2912860.9828181979-1981
ORF1ab/nsp2392G392RG572RnonsynGgaCga29130.01030931979-1981
ORF1ab/nsp2392G392RG572RnonsynGgAAgG29120.006872851979-1981
ORF1ab/nsp2392G392VG572VnonsyngGagTa83820.9879521979-1981
ORF1ab/nsp2392G392VG572VnonsyngGAgTG8310.01204821979-1981
ORF1ab/nsp2392G392delG572deldelGGA---565611979-1981
ORF1ab/nsp2392G392AG572AnonsyngGagCa8811979-1981
ORF1ab/nsp2392G392XG572XnonsynGgaTga5511979-1981
ORF1ab/nsp2392G392del1G572del1delGgA-gT530.61979-1981
ORF1ab/nsp2392G392del1G572del1delGga-ga520.41979-1981
ORF1ab/nsp2392G392del2G572del2delGGA--T1111979-1981

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2392G392EgGagAa12671267All0.000242
ORF1ab/nsp2392G392GggAggC276538All0.000053
ORF1ab/nsp2392G392GggAggG219538All0.000042
ORF1ab/nsp2392G392GggAggT43538All0.000008
ORF1ab/nsp2392G392EgGagAa512512B.1.1.70.000458
ORF1ab/nsp2392G392RGgaAga286291All0.000055
ORF1ab/nsp2392G392RGgaCga3291All0.000001
ORF1ab/nsp2392G392RGgAAgG2291All0
ORF1ab/nsp2392G392EgGagAa254254B.1.20.002237
ORF1ab/nsp2392G392EgGagAa201201AY.420.008086
ORF1ab/nsp2392G392GggAggC151177B.1.1.70.000135
ORF1ab/nsp2392G392GggAggG25177B.1.1.70.000022
ORF1ab/nsp2392G392GggAggT1177B.1.1.70.000001
ORF1ab/nsp2392G392EgGagAa118118B.1.4240.951613
ORF1ab/nsp2392G392VgGagTa8283All0.000016
ORF1ab/nsp2392G392VgGAgTG183All0
ORF1ab/nsp2392G392RGgaAga7676B.1.20.000669
ORF1ab/nsp2392G392GggAggC7275AY.250.000433
ORF1ab/nsp2392G392GggAggG375AY.250.000018
ORF1ab/nsp2392G392GggAggG6872AY.40.000106
ORF1ab/nsp2392G392GggAggC372AY.40.000005
ORF1ab/nsp2392G392GggAggT172AY.40.000002
ORF1ab/nsp2392G392delGGA---5656All0.000011
ORF1ab/nsp2392G392VgGagTa5253AY.440.000317
ORF1ab/nsp2392G392VgGAgTG153AY.440.000006
ORF1ab/nsp2392G392RGgaAga4747B.1.1.70.000042
ORF1ab/nsp2392G392GggAggG3535B.1.4290.000824
ORF1ab/nsp2392G392EgGagAa2222AY.40.000034
ORF1ab/nsp2392G392RGgaAga2222AY.90.001487
ORF1ab/nsp2392G392GggAggG2222B.1.3510.000654
ORF1ab/nsp2392G392GggAggG2020B.1.1600.000624
ORF1ab/nsp2392G392EgGagAa2020B.1.4290.000471
ORF1ab/nsp2392G392GggAggT1919C.370.002205
ORF1ab/nsp2392G392EgGagAa1818AY.39.10.000713
ORF1ab/nsp2392G392GggAggT1618AY.99.20.001475
ORF1ab/nsp2392G392GggAggG218AY.99.20.000184
ORF1ab/nsp2392G392EgGagAa1616P.10.000252
ORF1ab/nsp2392G392GggAggC1315B.1.617.20.000049
ORF1ab/nsp2392G392GggAggG215B.1.617.20.000008
ORF1ab/nsp2392G392RGgaAga1414B.1.1.3170.005764
ORF1ab/nsp2392G392RGgaAga1313AY.440.000079
ORF1ab/nsp2392G392RGgaAga1313B.1.1770.000171
ORF1ab/nsp2392G392RGgaAga1112AY.40.000017
ORF1ab/nsp2392G392RGgaCga112AY.40.000002
ORF1ab/nsp2392G392RGgaAga1011B.1.617.20.000038
ORF1ab/nsp2392G392RGgAAgG111B.1.617.20.000004
ORF1ab/nsp2392G392GggAggC710AY.1030.000043
ORF1ab/nsp2392G392GggAggG310AY.1030.000019
ORF1ab/nsp2392G392delGGA---1010B.1.1.70.000009
ORF1ab/nsp2392G392EgGagAa99AY.250.000054
ORF1ab/nsp2392G392EgGagAa99B.1.10.000163
ORF1ab/nsp2392G392AgGagCa88All0.000002
ORF1ab/nsp2392G392EgGagAa88AY.340.000776
ORF1ab/nsp2392G392EgGagAa88AY.34.10.00408
ORF1ab/nsp2392G392GggAggG78AY.440.000043
ORF1ab/nsp2392G392GggAggC18AY.440.000006
ORF1ab/nsp2392G392GggAggC77AY.390.000173
ORF1ab/nsp2392G392EgGagAa77AY.440.000043
ORF1ab/nsp2392G392GggAggG56AY.30.00005
ORF1ab/nsp2392G392GggAggC16AY.30.00001
ORF1ab/nsp2392G392XGgaTga55All0.000001
ORF1ab/nsp2392G392del1GgA-gT35All0.000001
ORF1ab/nsp2392G392del1Gga-ga25All0
ORF1ab/nsp2392G392EgGagAa55AY.430.000022
ORF1ab/nsp2392G392EgGagAa55AY.90.000338
ORF1ab/nsp2392G392EgGagAa55B.10.000046
ORF1ab/nsp2392G392delGGA---55B.10.000046
ORF1ab/nsp2392G392RGgaAga55B.10.000046
ORF1ab/nsp2392G392RGgaAga55B.1.4110.018519
ORF1ab/nsp2392G392RGgaAga55Q.30.000725
ORF1ab/nsp2392G392RGgaAga44AY.4.20.000087
ORF1ab/nsp2392G392RGgaAga44AY.850.001709
ORF1ab/nsp2392G392RGgaAga44B.1.1.2260.023256
ORF1ab/nsp2392G392EgGagAa44B.1.617.20.000015
ORF1ab/nsp2392G392RGgaAga33AY.250.000018
ORF1ab/nsp2392G392AgGagCa33AY.4.20.000065
ORF1ab/nsp2392G392delGGA---33AY.4.50.000322
ORF1ab/nsp2392G392EgGagAa33AY.99.20.000276
ORF1ab/nsp2392G392delGGA---33B.1.1.330.001263
ORF1ab/nsp2392G392delGGA---33B.1.1.3480.002389
ORF1ab/nsp2392G392EgGagAa33B.1.1.5190.000119
ORF1ab/nsp2392G392EgGagAa33B.1.177.860.00055
ORF1ab/nsp2392G392GggAggC23B.1.20.000018
ORF1ab/nsp2392G392GggAggG13B.1.20.000009
ORF1ab/nsp2392G392EgGagAa33B.1.2430.000209
ORF1ab/nsp2392G392VgGagTa33B.1.36.170.001482
ORF1ab/nsp2392G392GggAggC33B.1.3770.013699
ORF1ab/nsp2392G392delGGA---33B.1.4240.024194
ORF1ab/nsp2392G392RGgaAga33B.1.4290.000071
ORF1ab/nsp2392G392EgGagAa33B.1.5960.000261
ORF1ab/nsp2392G392VgGagTa33B.1.617.20.000011
ORF1ab/nsp2392G392GggAggG33B.400.001093
ORF1ab/nsp2392G392RGgaAga33P.10.000047
ORF1ab/nsp2392G392VgGagTa33P.1.120.001452
ORF1ab/nsp2392G392RGgaAga22AY.1030.000012
ORF1ab/nsp2392G392EgGagAa22AY.1170.000169
ORF1ab/nsp2392G392RGgaAga22AY.1190.000071
ORF1ab/nsp2392G392RGgaAga22AY.200.000078
ORF1ab/nsp2392G392GggAggG22AY.340.000194
ORF1ab/nsp2392G392RGgaAga22AY.350.000466
ORF1ab/nsp2392G392EgGagAa22AY.360.000296
ORF1ab/nsp2392G392VgGagTa22AY.390.000049
ORF1ab/nsp2392G392EgGagAa22AY.390.000049
ORF1ab/nsp2392G392delGGA---22AY.40.000003
ORF1ab/nsp2392G392AgGagCa22AY.40.000003
ORF1ab/nsp2392G392RGgaAga22AY.430.000009
ORF1ab/nsp2392G392GggAggG22AY.680.000547
ORF1ab/nsp2392G392VgGagTa22AY.690.000373
ORF1ab/nsp2392G392GggAggG22B.1.1.3060.000877
ORF1ab/nsp2392G392GggAggG22B.1.1.3480.001592
ORF1ab/nsp2392G392RGgaAga22B.1.1.5190.000079
ORF1ab/nsp2392G392delGGA---22B.1.1770.000026
ORF1ab/nsp2392G392GggAggC22B.1.1770.000026
ORF1ab/nsp2392G392RGgaAga22B.1.2340.000264
ORF1ab/nsp2392G392VgGagTa22B.1.4240.016129
ORF1ab/nsp2392G392EgGagAa22B.1.5770.001375
ORF1ab/nsp2392G392GggAggG22B.1.5820.000981
ORF1ab/nsp2392G392RGgaAga22B.1.5960.000174
ORF1ab/nsp2392G392GggAggC22B.1.6210.000177
ORF1ab/nsp2392G392RGgaAga22B.1.6280.000705
ORF1ab/nsp2392G392RGgaAga22C.370.000232
ORF1ab/nsp2392G392delGGA---22N.60.014184
ORF1ab/nsp2392G392EgGagAa22P.1.120.000968
ORF1ab/nsp2392G392delGGA---22P.20.000373
ORF1ab/nsp2392G392RGgaAga22P.30.00319
ORF1ab/nsp2392G392delGGA---22Q.10.000253
ORF1ab/nsp2392G392AgGagCa11AD.20.000219
ORF1ab/nsp2392G392del2GGA--T11All0
ORF1ab/nsp2392G392RGgaAga11AV.10.005051
ORF1ab/nsp2392G392EgGagAa11AY.1020.000027
ORF1ab/nsp2392G392GggAggG11AY.1020.000027
ORF1ab/nsp2392G392EgGagAa11AY.1030.000006
ORF1ab/nsp2392G392delGGA---11AY.1030.000006
ORF1ab/nsp2392G392RGgaAga11AY.1070.000466
ORF1ab/nsp2392G392GggAggG11AY.1080.001103
ORF1ab/nsp2392G392VgGagTa11AY.1100.000113
ORF1ab/nsp2392G392delGGA---11AY.1110.000183
ORF1ab/nsp2392G392VgGagTa11AY.1130.000142
ORF1ab/nsp2392G392GggAggC11AY.1130.000142
ORF1ab/nsp2392G392RGgaAga11AY.1130.000142
ORF1ab/nsp2392G392EgGagAa11AY.1140.000231
ORF1ab/nsp2392G392GggAggC11AY.140.000088
ORF1ab/nsp2392G392VgGagTa11AY.140.000088
ORF1ab/nsp2392G392delGGA---11AY.16.10.00047
ORF1ab/nsp2392G392GggAggG11AY.200.000039
ORF1ab/nsp2392G392RGgaAga11AY.230.00007
ORF1ab/nsp2392G392VgGagTa11AY.230.00007
ORF1ab/nsp2392G392delGGA---11AY.250.000006
ORF1ab/nsp2392G392VgGagTa11AY.250.000006
ORF1ab/nsp2392G392GggAggT11AY.260.000028
ORF1ab/nsp2392G392EgGagAa11AY.30.00001
ORF1ab/nsp2392G392RGgaAga11AY.330.000067
ORF1ab/nsp2392G392EgGagAa11AY.350.000233
ORF1ab/nsp2392G392EgGagAa11AY.370.000316
ORF1ab/nsp2392G392RGgaAga11AY.39.20.001541
ORF1ab/nsp2392G392del2GGA--T11AY.40.000002
ORF1ab/nsp2392G392GggAggC11AY.4.20.000022
ORF1ab/nsp2392G392GggAggC11AY.430.000004
ORF1ab/nsp2392G392VgGagTa11AY.430.000004
ORF1ab/nsp2392G392GggAggG11AY.450.000122
ORF1ab/nsp2392G392EgGagAa11AY.470.000031
ORF1ab/nsp2392G392RGgaAga11AY.50.000021
ORF1ab/nsp2392G392delGGA---11AY.540.000095
ORF1ab/nsp2392G392GggAggG11AY.590.00053
ORF1ab/nsp2392G392RGgaAga11AY.60.000041
ORF1ab/nsp2392G392VgGagTa11AY.610.000105
ORF1ab/nsp2392G392del1GgA-gT11AY.650.000533
ORF1ab/nsp2392G392del1GgA-gT11AY.750.000056
ORF1ab/nsp2392G392RGgAAgG11AY.750.000056
ORF1ab/nsp2392G392VgGagTa11AY.75.10.00018
ORF1ab/nsp2392G392delGGA---11AY.75.10.00018
ORF1ab/nsp2392G392GggAggG11AY.9.10.000084
ORF1ab/nsp2392G392AgGagCa11AY.9.20.000037
ORF1ab/nsp2392G392delGGA---11AY.9.20.000037
ORF1ab/nsp2392G392GggAggC11AY.960.002075
ORF1ab/nsp2392G392EgGagAa11AY.980.000079
ORF1ab/nsp2392G392VgGagTa11AY.980.000079
ORF1ab/nsp2392G392GggAggG11AY.980.000079
ORF1ab/nsp2392G392EgGagAa11AY.98.10.000048
ORF1ab/nsp2392G392RGgaAga11AY.99.20.000092
ORF1ab/nsp2392G392XGgaTga11B0.000128
ORF1ab/nsp2392G392GggAggT11B0.000128
ORF1ab/nsp2392G392XGgaTga11B.10.000009
ORF1ab/nsp2392G392VgGagTa11B.10.000009
ORF1ab/nsp2392G392GggAggG11B.10.000009
ORF1ab/nsp2392G392delGGA---11B.1.10.000018
ORF1ab/nsp2392G392VgGagTa11B.1.10.000018
ORF1ab/nsp2392G392GggAggT11B.1.10.000018
ORF1ab/nsp2392G392RGgaCga11B.1.1.10.000327
ORF1ab/nsp2392G392EgGagAa11B.1.1.1860.003436
ORF1ab/nsp2392G392GggAggT11B.1.1.2160.00089
ORF1ab/nsp2392G392GggAggC11B.1.1.2630.001558
ORF1ab/nsp2392G392RGgaAga11B.1.1.280.000311
ORF1ab/nsp2392G392RGgaAga11B.1.1.2840.000107
ORF1ab/nsp2392G392RGgaAga11B.1.1.3060.000438
ORF1ab/nsp2392G392GggAggC11B.1.1.3510.002793
ORF1ab/nsp2392G392GggAggG11B.1.1.3530.020833
ORF1ab/nsp2392G392RGgaAga11B.1.1.390.00051
ORF1ab/nsp2392G392RGgaAga11B.1.1.4090.002833
ORF1ab/nsp2392G392delGGA---11B.1.1.4160.000905
ORF1ab/nsp2392G392VgGagTa11B.1.1.5230.001563
ORF1ab/nsp2392G392del1Gga-ga11B.1.1.70.000001
ORF1ab/nsp2392G392XGgaTga11B.1.1050.009615
ORF1ab/nsp2392G392XGgaTga11B.1.1600.000031
ORF1ab/nsp2392G392EgGagAa11B.1.1770.000013
ORF1ab/nsp2392G392EgGagAa11B.1.177.120.000152
ORF1ab/nsp2392G392delGGA---11B.1.177.120.000152
ORF1ab/nsp2392G392delGGA---11B.1.177.180.00116
ORF1ab/nsp2392G392VgGagTa11B.1.177.200.001517
ORF1ab/nsp2392G392EgGagAa11B.1.177.210.000076
ORF1ab/nsp2392G392EgGagAa11B.1.177.820.000477
ORF1ab/nsp2392G392GggAggC11B.1.177.860.000183
ORF1ab/nsp2392G392delGGA---11B.1.1790.003759
ORF1ab/nsp2392G392VgGagTa11B.1.20.000009
ORF1ab/nsp2392G392del1Gga-ga11B.1.20.000009
ORF1ab/nsp2392G392RGgaAga11B.1.2210.000071
ORF1ab/nsp2392G392EgGagAa11B.1.2210.000071
ORF1ab/nsp2392G392delGGA---11B.1.2340.000132
ORF1ab/nsp2392G392RGgaCga11B.1.2360.002053
ORF1ab/nsp2392G392EgGagAa11B.1.2580.000067
ORF1ab/nsp2392G392EgGagAa11B.1.3050.002151
ORF1ab/nsp2392G392GggAggG11B.1.3110.000275
ORF1ab/nsp2392G392GggAggT11B.1.3370.005587
ORF1ab/nsp2392G392GggAggC11B.1.3490.000715
ORF1ab/nsp2392G392RGgaAga11B.1.3510.00003
ORF1ab/nsp2392G392EgGagAa11B.1.3510.00003
ORF1ab/nsp2392G392RGgaAga11B.1.4040.001302
ORF1ab/nsp2392G392RGgaAga11B.1.428.30.012821
ORF1ab/nsp2392G392delGGA---11B.1.4290.000024
ORF1ab/nsp2392G392EgGagAa11B.1.438.10.000107
ORF1ab/nsp2392G392delGGA---11B.1.4390.005917
ORF1ab/nsp2392G392XGgaTga11B.1.4530.003236
ORF1ab/nsp2392G392GggAggC11B.1.5250.000113
ORF1ab/nsp2392G392GggAggG11B.1.5260.000024
ORF1ab/nsp2392G392delGGA---11B.1.5610.000397
ORF1ab/nsp2392G392RGgaAga11B.1.5750.000303
ORF1ab/nsp2392G392EgGagAa11B.1.5820.000491
ORF1ab/nsp2392G392GggAggG11B.1.5950.000261
ORF1ab/nsp2392G392GggAggC11B.1.5970.00463
ORF1ab/nsp2392G392RGgaAga11B.1.6010.030303
ORF1ab/nsp2392G392EgGagAa11B.1.617.10.000129
ORF1ab/nsp2392G392delGGA---11B.1.617.20.000004
ORF1ab/nsp2392G392AgGagCa11B.1.617.20.000004
ORF1ab/nsp2392G392del1GgA-gT11B.1.617.20.000004
ORF1ab/nsp2392G392RGgaAga11B.1.6370.000073
ORF1ab/nsp2392G392delGGA---11B.570.015152
ORF1ab/nsp2392G392GggAggT11C.37.10.002618
ORF1ab/nsp2392G392GggAggG11P.10.000016
ORF1ab/nsp2392G392delGGA---11P.10.000016
ORF1ab/nsp2392G392RGgaAga11Q.10.000126
ORF1ab/nsp2392G392GggAggC11Q.10.000126
ORF1ab/nsp2392G392VgGagTa11R.10.00009