CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 39 & Codon = ctT

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp239L39LL219LsynctGctT1114118250.163809920-922

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp239L39LctGctT182511141All0.000349
ORF1ab/nsp239L39LctGctT1651898B.1.1.70.000148
ORF1ab/nsp239L39LctGctT112627AY.40.000174
ORF1ab/nsp239L39LctGctT2561D.20.00015
ORF1ab/nsp239L39LctGctT25418AY.440.000152
ORF1ab/nsp239L39LctGctT176411B.1.617.20.000663
ORF1ab/nsp239L39LctGctT4403B.1.4290.000094
ORF1ab/nsp239L39LctGctT8323B.1.360.001167
ORF1ab/nsp239L39LctGctT60318AY.1030.000373
ORF1ab/nsp239L39LctGctT161266P.10.002536
ORF1ab/nsp239L39LctGctT242250AY.98.10.01172
ORF1ab/nsp239L39LctGctT1248B.1.2580.000067
ORF1ab/nsp239L39LctGctT25228B.1.20.00022
ORF1ab/nsp239L39LctGctT13212B.1.1770.000171
ORF1ab/nsp239L39LctGctT31179B.10.000284
ORF1ab/nsp239L39LctGctT8159AY.1200.000297
ORF1ab/nsp239L39LctGctT150150C.2.11
ORF1ab/nsp239L39LctGctT36141AY.30.000358
ORF1ab/nsp239L39LctGctT14117B.1.6370.001023
ORF1ab/nsp239L39LctGctT44115AY.430.000195
ORF1ab/nsp239L39LctGctT86114B.1.5960.007494
ORF1ab/nsp239L39LctGctT9102B.1.10.000163
ORF1ab/nsp239L39LctGctT673B.1.1600.000187
ORF1ab/nsp239L39LctGctT371AY.200.000117
ORF1ab/nsp239L39LctGctT166B.1.1.2140.000055
ORF1ab/nsp239L39LctGctT262C.160.002121
ORF1ab/nsp239L39LctGctT2555AY.390.000618
ORF1ab/nsp239L39LctGctT754AY.39.10.000277
ORF1ab/nsp239L39LctGctT951AY.250.000054
ORF1ab/nsp239L39LctGctT850B.1.5260.000188
ORF1ab/nsp239L39LctGctT2749AY.1020.000716
ORF1ab/nsp239L39LctGctT249AY.99.20.000184
ORF1ab/nsp239L39LctGctT248AY.470.000062
ORF1ab/nsp239L39LctGctT2441Q.30.003481
ORF1ab/nsp239L39LctGctT539AY.50.000103
ORF1ab/nsp239L39LctGctT238AY.1000.000092
ORF1ab/nsp239L39LctGctT137AY.360.000148
ORF1ab/nsp239L39LctGctT935AY.260.000255
ORF1ab/nsp239L39LctGctT134AY.9.10.000084
ORF1ab/nsp239L39LctGctT133AY.290.000016
ORF1ab/nsp239L39LctGctT433B.1.3510.000119
ORF1ab/nsp239L39LctGctT3131C.20.5
ORF1ab/nsp239L39LctGctT730AY.610.000733
ORF1ab/nsp239L39LctGctT2429AY.330.001603
ORF1ab/nsp239L39LctGctT428B.1.2210.000284
ORF1ab/nsp239L39LctGctT326B.1.1.5190.000119
ORF1ab/nsp239L39LctGctT126B.1.4270.00005
ORF1ab/nsp239L39LctGctT322AY.1210.000406
ORF1ab/nsp239L39LctGctT121AY.4.20.000022
ORF1ab/nsp239L39LctGctT2121B.1.177.160.013953
ORF1ab/nsp239L39LctGctT721P.1.140.000335
ORF1ab/nsp239L39LctGctT215AY.75.10.000361
ORF1ab/nsp239L39LctGctT1415B.1.1.4340.00488
ORF1ab/nsp239L39LctGctT1114AY.230.000767
ORF1ab/nsp239L39LctGctT1414B.1.1.1551
ORF1ab/nsp239L39LctGctT213AY.90.000135
ORF1ab/nsp239L39LctGctT913B.1.1.10.00294
ORF1ab/nsp239L39LctGctT612AY.9.20.00022
ORF1ab/nsp239L39LctGctT312B.1.2400.000647
ORF1ab/nsp239L39LctGctT112B.1.4990.00105
ORF1ab/nsp239L39LctGctT1011AY.1060.003349
ORF1ab/nsp239L39LctGctT1011B.1.1.3060.004384
ORF1ab/nsp239L39LctGctT1010B.1.177.690.014837
ORF1ab/nsp239L39LctGctT49AY.29.10.000882
ORF1ab/nsp239L39LctGctT39B.1.3690.000856
ORF1ab/nsp239L39LctGctT28B.1.258.170.000208
ORF1ab/nsp239L39LctGctT88P.60.025157
ORF1ab/nsp239L39LctGctT27AY.1190.000071
ORF1ab/nsp239L39LctGctT27AY.340.000194
ORF1ab/nsp239L39LctGctT37AY.460.000312
ORF1ab/nsp239L39LctGctT67AY.5.40.00166
ORF1ab/nsp239L39LctGctT17AY.60.000041
ORF1ab/nsp239L39LctGctT27AY.750.000112
ORF1ab/nsp239L39LctGctT67B.1.2360.01232
ORF1ab/nsp239L39LctGctT17B.1.36.290.000517
ORF1ab/nsp239L39LctGctT17Q.10.000126
ORF1ab/nsp239L39LctGctT36AY.1180.000188
ORF1ab/nsp239L39LctGctT26B.1.4380.013072
ORF1ab/nsp239L39LctGctT25AY.1170.000169
ORF1ab/nsp239L39LctGctT25B.1.1.250.001137
ORF1ab/nsp239L39LctGctT15B.1.1.2770.000759
ORF1ab/nsp239L39LctGctT35B.1.1.2840.000322
ORF1ab/nsp239L39LctGctT24AY.240.000862
ORF1ab/nsp239L39LctGctT14AY.3.10.000085
ORF1ab/nsp239L39LctGctT34AY.770.003382
ORF1ab/nsp239L39LctGctT14B.1.1.2160.00089
ORF1ab/nsp239L39LctGctT44B.1.1.2220.000816
ORF1ab/nsp239L39LctGctT24B.1.177.210.000153
ORF1ab/nsp239L39LctGctT24B.1.2340.000264
ORF1ab/nsp239L39LctGctT23AY.1090.001479
ORF1ab/nsp239L39LctGctT13AY.130.000161
ORF1ab/nsp239L39LctGctT13AY.16.10.00047
ORF1ab/nsp239L39LctGctT33AY.34.10.00153
ORF1ab/nsp239L39LctGctT13AY.350.000233
ORF1ab/nsp239L39LctGctT33AY.46.30.002801
ORF1ab/nsp239L39LctGctT23AY.46.60.000144
ORF1ab/nsp239L39LctGctT13AY.5.30.000337
ORF1ab/nsp239L39LctGctT13B.1.1.330.000421
ORF1ab/nsp239L39LctGctT13B.1.466.20.000391
ORF1ab/nsp239L39LctGctT12B.1.1.1890.001513
ORF1ab/nsp239L39LctGctT12B.1.1.3110.000358
ORF1ab/nsp239L39LctGctT12B.1.1.540.003021
ORF1ab/nsp239L39LctGctT22B.1.1470.001512
ORF1ab/nsp239L39LctGctT22B.1.177.600.000437
ORF1ab/nsp239L39LctGctT22B.1.3750.001639
ORF1ab/nsp239L39LctGctT22B.1.5270.007407
ORF1ab/nsp239L39LctGctT12B.1.617.10.000129
ORF1ab/nsp239L39LctGctT12P.1.10.000318
ORF1ab/nsp239L39LctGctT22P.1.80.009569
ORF1ab/nsp239L39LctGctT11A.2.30.004739
ORF1ab/nsp239L39LctGctT11AY.1050.000643
ORF1ab/nsp239L39LctGctT11AY.1150.005208
ORF1ab/nsp239L39LctGctT11AY.4.50.000107
ORF1ab/nsp239L39LctGctT11AY.46.10.001027
ORF1ab/nsp239L39LctGctT11AY.7.20.000559
ORF1ab/nsp239L39LctGctT11AY.700.000209
ORF1ab/nsp239L39LctGctT11B.1.1.2030.016949
ORF1ab/nsp239L39LctGctT11B.1.1.5260.003546
ORF1ab/nsp239L39LctGctT11B.1.177.480.003125
ORF1ab/nsp239L39LctGctT11B.1.177.510.004566
ORF1ab/nsp239L39LctGctT11B.1.2290.009709
ORF1ab/nsp239L39LctGctT11B.1.4280.00102
ORF1ab/nsp239L39LctGctT11B.1.4950.009091
ORF1ab/nsp239L39LctGctT11B.1.5400.009709
ORF1ab/nsp239L39LctGctT11B.1.5700.002941
ORF1ab/nsp239L39LctGctT11B.1.5770.000687
ORF1ab/nsp239L39LctGctT11C.350.000774
ORF1ab/nsp239L39LctGctT11P.1.10.20.041667
ORF1ab/nsp239L39LctGctT11R.10.00009