CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 39 & Codon = ctA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp239L39LL219LsynctGctA1114125550.229333920-922

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp239L39LctGctA255511141All0.000489
ORF1ab/nsp239L39LctGctA751898B.1.1.70.000067
ORF1ab/nsp239L39LctGctA13051305B.1.36.270.996183
ORF1ab/nsp239L39LctGctA99627AY.40.000154
ORF1ab/nsp239L39LctGctA23418AY.440.00014
ORF1ab/nsp239L39LctGctA108411B.1.617.20.000407
ORF1ab/nsp239L39LctGctA14403B.1.4290.000329
ORF1ab/nsp239L39LctGctA312323B.1.360.045521
ORF1ab/nsp239L39LctGctA18318AY.1030.000112
ORF1ab/nsp239L39LctGctA45266P.10.000709
ORF1ab/nsp239L39LctGctA1248B.1.2580.000067
ORF1ab/nsp239L39LctGctA16228B.1.20.000141
ORF1ab/nsp239L39LctGctA11212B.1.1770.000145
ORF1ab/nsp239L39LctGctA20179B.10.000183
ORF1ab/nsp239L39LctGctA3141AY.30.00003
ORF1ab/nsp239L39LctGctA2117B.1.6370.000146
ORF1ab/nsp239L39LctGctA8115AY.430.000035
ORF1ab/nsp239L39LctGctA1114B.1.5960.000087
ORF1ab/nsp239L39LctGctA19102B.1.10.000345
ORF1ab/nsp239L39LctGctA171AY.200.000039
ORF1ab/nsp239L39LctGctA6266B.1.1.2140.003438
ORF1ab/nsp239L39LctGctA165B.1.6090.000479
ORF1ab/nsp239L39LctGctA6262A0.023994
ORF1ab/nsp239L39LctGctA155AY.390.000025
ORF1ab/nsp239L39LctGctA5555AY.7.10.006199
ORF1ab/nsp239L39LctGctA1254AY.39.10.000475
ORF1ab/nsp239L39LctGctA551AY.250.00003
ORF1ab/nsp239L39LctGctA450B.1.5260.000094
ORF1ab/nsp239L39LctGctA349AY.1020.00008
ORF1ab/nsp239L39LctGctA1849AY.99.20.001659
ORF1ab/nsp239L39LctGctA248AY.470.000062
ORF1ab/nsp239L39LctGctA344B.1.6210.000266
ORF1ab/nsp239L39LctGctA139AY.50.000021
ORF1ab/nsp239L39LctGctA2538AY.1000.00115
ORF1ab/nsp239L39LctGctA3234AY.9.10.002679
ORF1ab/nsp239L39LctGctA2833AY.290.000442
ORF1ab/nsp239L39LctGctA233B.1.3510.000059
ORF1ab/nsp239L39LctGctA130AY.610.000105
ORF1ab/nsp239L39LctGctA129AY.330.000067
ORF1ab/nsp239L39LctGctA1326B.1.1.5190.000516
ORF1ab/nsp239L39LctGctA826B.1.4270.000404
ORF1ab/nsp239L39LctGctA1822AY.1210.002436
ORF1ab/nsp239L39LctGctA321AY.4.20.000065
ORF1ab/nsp239L39LctGctA316B.1.1.280.000934
ORF1ab/nsp239L39LctGctA115B.1.1.3170.000412
ORF1ab/nsp239L39LctGctA1213AY.140.001056
ORF1ab/nsp239L39LctGctA312AY.9.20.00011
ORF1ab/nsp239L39LctGctA511AY.420.000201
ORF1ab/nsp239L39LctGctA111C.370.000116
ORF1ab/nsp239L39LctGctA29AY.29.10.000441
ORF1ab/nsp239L39LctGctA79B.1.177.440.003633
ORF1ab/nsp239L39LctGctA89B.1.4700.011236
ORF1ab/nsp239L39LctGctA18AY.120.000316
ORF1ab/nsp239L39LctGctA17AY.1190.000035
ORF1ab/nsp239L39LctGctA27AY.340.000194
ORF1ab/nsp239L39LctGctA17AY.460.000104
ORF1ab/nsp239L39LctGctA17AY.5.40.000277
ORF1ab/nsp239L39LctGctA17AY.60.000041
ORF1ab/nsp239L39LctGctA16AY.1180.000063
ORF1ab/nsp239L39LctGctA66B.1.4680.034286
ORF1ab/nsp239L39LctGctA15AY.1170.000085
ORF1ab/nsp239L39LctGctA15B.1.1.250.000569
ORF1ab/nsp239L39LctGctA15B.1.177.70.000165
ORF1ab/nsp239L39LctGctA15C.360.000911
ORF1ab/nsp239L39LctGctA14AY.240.000431
ORF1ab/nsp239L39LctGctA44AY.690.000747
ORF1ab/nsp239L39LctGctA14AY.770.001127
ORF1ab/nsp239L39LctGctA24B.1.2340.000264
ORF1ab/nsp239L39LctGctA14P.20.000187
ORF1ab/nsp239L39LctGctA13AY.1090.00074
ORF1ab/nsp239L39LctGctA13AY.1140.000231
ORF1ab/nsp239L39LctGctA13AY.130.000161
ORF1ab/nsp239L39LctGctA23AY.980.000158
ORF1ab/nsp239L39LctGctA23B.1.1.330.000842
ORF1ab/nsp239L39LctGctA33B.1.2600.010033
ORF1ab/nsp239L39LctGctA13B.1.5950.000261
ORF1ab/nsp239L39LctGctA22AY.790.002421
ORF1ab/nsp239L39LctGctA22AY.800.002257
ORF1ab/nsp239L39LctGctA12AY.840.000437
ORF1ab/nsp239L39LctGctA22B.1.1420.005797
ORF1ab/nsp239L39LctGctA22B.1.36.160.002849
ORF1ab/nsp239L39LctGctA22B.1.4660.046512
ORF1ab/nsp239L39LctGctA12B.1.4800.002488
ORF1ab/nsp239L39LctGctA11A.280.002646
ORF1ab/nsp239L39LctGctA11AY.10.000396
ORF1ab/nsp239L39LctGctA11AY.320.000532
ORF1ab/nsp239L39LctGctA11AY.540.000095
ORF1ab/nsp239L39LctGctA11B.1.1.2860.002899
ORF1ab/nsp239L39LctGctA11B.1.1.3180.000302
ORF1ab/nsp239L39LctGctA11B.1.160.230.004831
ORF1ab/nsp239L39LctGctA11B.1.177.150.000631
ORF1ab/nsp239L39LctGctA11B.1.177.650.000665
ORF1ab/nsp239L39LctGctA11B.1.1900.01
ORF1ab/nsp239L39LctGctA11B.1.220.001318
ORF1ab/nsp239L39LctGctA11B.1.3320.003497
ORF1ab/nsp239L39LctGctA11B.1.36.220.001208
ORF1ab/nsp239L39LctGctA11B.1.36.340.021277
ORF1ab/nsp239L39LctGctA11B.1.4080.00369
ORF1ab/nsp239L39LctGctA11B.1.4160.001269
ORF1ab/nsp239L39LctGctA11B.1.4560.003268
ORF1ab/nsp239L39LctGctA11B.1.5460.003704
ORF1ab/nsp239L39LctGctA11B.1.5880.00091
ORF1ab/nsp239L39LctGctA11B.1.5900.004545
ORF1ab/nsp239L39LctGctA11C.260.007353
ORF1ab/nsp239L39LctGctA11P.1.120.000484