CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 39 & Codon = Ttg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp239L39LL219LsynCtgTtg1114167250.603626920-922

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp239L39LCtgTtg672511141All0.001286
ORF1ab/nsp239L39LCtgTtg16571898B.1.1.70.001483
ORF1ab/nsp239L39LCtgTtg416627AY.40.000647
ORF1ab/nsp239L39LCtgTtg559561D.20.041948
ORF1ab/nsp239L39LCtgTtg370418AY.440.002252
ORF1ab/nsp239L39LCtgTtg124411B.1.617.20.000467
ORF1ab/nsp239L39LCtgTtg385403B.1.4290.009059
ORF1ab/nsp239L39LCtgTtg3323B.1.360.000438
ORF1ab/nsp239L39LCtgTtg240318AY.1030.00149
ORF1ab/nsp239L39LCtgTtg47266P.10.00074
ORF1ab/nsp239L39LCtgTtg8250AY.98.10.000387
ORF1ab/nsp239L39LCtgTtg246248B.1.2580.016371
ORF1ab/nsp239L39LCtgTtg187228B.1.20.001647
ORF1ab/nsp239L39LCtgTtg188212B.1.1770.002476
ORF1ab/nsp239L39LCtgTtg212212B.1.4480.55643
ORF1ab/nsp239L39LCtgTtg128179B.10.001172
ORF1ab/nsp239L39LCtgTtg151159AY.1200.005614
ORF1ab/nsp239L39LCtgTtg102141AY.30.001015
ORF1ab/nsp239L39LCtgTtg101117B.1.6370.00738
ORF1ab/nsp239L39LCtgTtg63115AY.430.000279
ORF1ab/nsp239L39LCtgTtg27114B.1.5960.002353
ORF1ab/nsp239L39LCtgTtg74102B.1.10.001342
ORF1ab/nsp239L39LCtgTtg6773B.1.1600.00209
ORF1ab/nsp239L39LCtgTtg6771AY.200.002604
ORF1ab/nsp239L39LCtgTtg366B.1.1.2140.000166
ORF1ab/nsp239L39LCtgTtg6465B.1.6090.030681
ORF1ab/nsp239L39LCtgTtg6062C.160.063627
ORF1ab/nsp239L39LCtgTtg2955AY.390.000717
ORF1ab/nsp239L39LCtgTtg3554AY.39.10.001386
ORF1ab/nsp239L39LCtgTtg5252B.1.438.21
ORF1ab/nsp239L39LCtgTtg3751AY.250.000223
ORF1ab/nsp239L39LCtgTtg3850B.1.5260.000893
ORF1ab/nsp239L39LCtgTtg1749AY.1020.000451
ORF1ab/nsp239L39LCtgTtg2949AY.99.20.002673
ORF1ab/nsp239L39LCtgTtg4448AY.470.001369
ORF1ab/nsp239L39LCtgTtg3244B.1.6210.002833
ORF1ab/nsp239L39LCtgTtg1741Q.30.002466
ORF1ab/nsp239L39LCtgTtg3339AY.50.000681
ORF1ab/nsp239L39LCtgTtg1138AY.1000.000506
ORF1ab/nsp239L39LCtgTtg3637AY.360.005336
ORF1ab/nsp239L39LCtgTtg2635AY.260.000736
ORF1ab/nsp239L39LCtgTtg134AY.9.10.000084
ORF1ab/nsp239L39LCtgTtg3434B.1.258.140.033333
ORF1ab/nsp239L39LCtgTtg433AY.290.000063
ORF1ab/nsp239L39LCtgTtg2733B.1.3510.000803
ORF1ab/nsp239L39LCtgTtg2230AY.610.002305
ORF1ab/nsp239L39LCtgTtg3030B.1.2430.002088
ORF1ab/nsp239L39LCtgTtg429AY.330.000267
ORF1ab/nsp239L39LCtgTtg2428B.1.2210.001705
ORF1ab/nsp239L39LCtgTtg1026B.1.1.5190.000397
ORF1ab/nsp239L39LCtgTtg1726B.1.4270.000858
ORF1ab/nsp239L39LCtgTtg2424AY.1130.003417
ORF1ab/nsp239L39LCtgTtg122AY.1210.000135
ORF1ab/nsp239L39LCtgTtg1721AY.4.20.000369
ORF1ab/nsp239L39LCtgTtg1421P.1.140.000669
ORF1ab/nsp239L39LCtgTtg1717B.1.438.10.001823
ORF1ab/nsp239L39LCtgTtg1316B.1.1.280.004046
ORF1ab/nsp239L39LCtgTtg1315AY.75.10.002344
ORF1ab/nsp239L39LCtgTtg1415B.1.1.3170.005764
ORF1ab/nsp239L39LCtgTtg115B.1.1.4340.000349
ORF1ab/nsp239L39LCtgTtg314AY.230.000209
ORF1ab/nsp239L39LCtgTtg113AY.140.000088
ORF1ab/nsp239L39LCtgTtg1113AY.90.000744
ORF1ab/nsp239L39LCtgTtg413B.1.1.10.001307
ORF1ab/nsp239L39LCtgTtg1313B.1.4090.010156
ORF1ab/nsp239L39LCtgTtg312AY.9.20.00011
ORF1ab/nsp239L39LCtgTtg912B.1.2400.00194
ORF1ab/nsp239L39LCtgTtg1112B.1.4990.011555
ORF1ab/nsp239L39LCtgTtg111AY.1060.000335
ORF1ab/nsp239L39LCtgTtg511AY.420.000201
ORF1ab/nsp239L39LCtgTtg911AY.450.001095
ORF1ab/nsp239L39LCtgTtg1111AY.990.011542
ORF1ab/nsp239L39LCtgTtg111B.1.1.3060.000438
ORF1ab/nsp239L39LCtgTtg1011C.370.001161
ORF1ab/nsp239L39LCtgTtg1010B.1.6000.05848
ORF1ab/nsp239L39LCtgTtg39AY.29.10.000662
ORF1ab/nsp239L39LCtgTtg29B.1.177.440.001038
ORF1ab/nsp239L39LCtgTtg69B.1.3690.001711
ORF1ab/nsp239L39LCtgTtg19B.1.4700.001404
ORF1ab/nsp239L39LCtgTtg99C.230.052326
ORF1ab/nsp239L39LCtgTtg99P.1.150.002091
ORF1ab/nsp239L39LCtgTtg78AY.120.002212
ORF1ab/nsp239L39LCtgTtg88B.1.1.390.004077
ORF1ab/nsp239L39LCtgTtg68B.1.258.170.000624
ORF1ab/nsp239L39LCtgTtg77AD.20.001533
ORF1ab/nsp239L39LCtgTtg47AY.1190.000141
ORF1ab/nsp239L39LCtgTtg27AY.340.000194
ORF1ab/nsp239L39LCtgTtg17AY.460.000104
ORF1ab/nsp239L39LCtgTtg57AY.60.000206
ORF1ab/nsp239L39LCtgTtg57AY.750.00028
ORF1ab/nsp239L39LCtgTtg17B.1.2360.002053
ORF1ab/nsp239L39LCtgTtg67B.1.36.290.003104
ORF1ab/nsp239L39LCtgTtg67Q.10.000758
ORF1ab/nsp239L39LCtgTtg26AY.1180.000125
ORF1ab/nsp239L39LCtgTtg66AY.600.005629
ORF1ab/nsp239L39LCtgTtg66AY.70.001176
ORF1ab/nsp239L39LCtgTtg46B.1.4380.026144
ORF1ab/nsp239L39LCtgTtg66Q.80.000989
ORF1ab/nsp239L39LCtgTtg25AY.1170.000169
ORF1ab/nsp239L39LCtgTtg55B.1.1.1760.002197
ORF1ab/nsp239L39LCtgTtg25B.1.1.250.001137
ORF1ab/nsp239L39LCtgTtg45B.1.1.2770.003035
ORF1ab/nsp239L39LCtgTtg25B.1.1.2840.000215
ORF1ab/nsp239L39LCtgTtg45B.1.1.630.001543
ORF1ab/nsp239L39LCtgTtg55B.1.177.620.005959
ORF1ab/nsp239L39LCtgTtg45B.1.177.70.000659
ORF1ab/nsp239L39LCtgTtg55B.1.3110.001373
ORF1ab/nsp239L39LCtgTtg55B.1.90.030864
ORF1ab/nsp239L39LCtgTtg45C.360.003643
ORF1ab/nsp239L39LCtgTtg55P.1.70.001596
ORF1ab/nsp239L39LCtgTtg14AY.240.000431
ORF1ab/nsp239L39LCtgTtg34AY.3.10.000256
ORF1ab/nsp239L39LCtgTtg34B.1.1.2160.002671
ORF1ab/nsp239L39LCtgTtg44B.1.1.4280.037736
ORF1ab/nsp239L39LCtgTtg44B.1.1.4850.066667
ORF1ab/nsp239L39LCtgTtg44B.1.110.30.002874
ORF1ab/nsp239L39LCtgTtg24B.1.177.210.000153
ORF1ab/nsp239L39LCtgTtg44B.1.177.790.009368
ORF1ab/nsp239L39LCtgTtg44B.1.177.860.000734
ORF1ab/nsp239L39LCtgTtg44B.1.2650.005083
ORF1ab/nsp239L39LCtgTtg44B.1.5580.018265
ORF1ab/nsp239L39LCtgTtg34P.20.00056
ORF1ab/nsp239L39LCtgTtg23AY.1140.000462
ORF1ab/nsp239L39LCtgTtg33AY.1160.00086
ORF1ab/nsp239L39LCtgTtg13AY.130.000161
ORF1ab/nsp239L39LCtgTtg23AY.16.10.00094
ORF1ab/nsp239L39LCtgTtg33AY.270.000194
ORF1ab/nsp239L39LCtgTtg23AY.350.000466
ORF1ab/nsp239L39LCtgTtg33AY.4.2.10.000447
ORF1ab/nsp239L39LCtgTtg13AY.46.60.000072
ORF1ab/nsp239L39LCtgTtg23AY.5.30.000675
ORF1ab/nsp239L39LCtgTtg13AY.980.000079
ORF1ab/nsp239L39LCtgTtg33B.1.1.1870.026549
ORF1ab/nsp239L39LCtgTtg33B.1.1.3760.017857
ORF1ab/nsp239L39LCtgTtg33B.1.36.310.005254
ORF1ab/nsp239L39LCtgTtg23B.1.466.20.000782
ORF1ab/nsp239L39LCtgTtg23B.1.5950.000522
ORF1ab/nsp239L39LCtgTtg22AP.10.003003
ORF1ab/nsp239L39LCtgTtg22AY.120.20.002571
ORF1ab/nsp239L39LCtgTtg22AY.46.50.000397
ORF1ab/nsp239L39LCtgTtg22AY.620.000871
ORF1ab/nsp239L39LCtgTtg22AY.650.001066
ORF1ab/nsp239L39LCtgTtg22AY.680.000547
ORF1ab/nsp239L39LCtgTtg12AY.840.000437
ORF1ab/nsp239L39LCtgTtg22AY.950.001522
ORF1ab/nsp239L39LCtgTtg22B.1.1.1530.002191
ORF1ab/nsp239L39LCtgTtg12B.1.1.1890.001513
ORF1ab/nsp239L39LCtgTtg22B.1.1.2630.003115
ORF1ab/nsp239L39LCtgTtg12B.1.1.3110.000358
ORF1ab/nsp239L39LCtgTtg22B.1.1.3120.003824
ORF1ab/nsp239L39LCtgTtg22B.1.1.3150.016949
ORF1ab/nsp239L39LCtgTtg22B.1.1.3890.012121
ORF1ab/nsp239L39LCtgTtg22B.1.1.4660.017391
ORF1ab/nsp239L39LCtgTtg22B.1.1.500.001358
ORF1ab/nsp239L39LCtgTtg12B.1.1.540.003021
ORF1ab/nsp239L39LCtgTtg22B.1.1040.00738
ORF1ab/nsp239L39LCtgTtg22B.1.177.360.032258
ORF1ab/nsp239L39LCtgTtg22B.1.177.540.001213
ORF1ab/nsp239L39LCtgTtg22B.1.177.560.001335
ORF1ab/nsp239L39LCtgTtg22B.1.1950.01005
ORF1ab/nsp239L39LCtgTtg22B.1.3490.00143
ORF1ab/nsp239L39LCtgTtg22B.1.36.80.002
ORF1ab/nsp239L39LCtgTtg22B.1.3930.057143
ORF1ab/nsp239L39LCtgTtg22B.1.429.10.024096
ORF1ab/nsp239L39LCtgTtg12B.1.4800.002488
ORF1ab/nsp239L39LCtgTtg22B.1.5250.000226
ORF1ab/nsp239L39LCtgTtg12B.1.617.10.000129
ORF1ab/nsp239L39LCtgTtg22B.1.930.001867
ORF1ab/nsp239L39LCtgTtg12P.1.10.000318
ORF1ab/nsp239L39LCtgTtg22P.1.170.000324
ORF1ab/nsp239L39LCtgTtg11A.10.000282
ORF1ab/nsp239L39LCtgTtg11A.2.50.000499
ORF1ab/nsp239L39LCtgTtg11A.2.5.30.010309
ORF1ab/nsp239L39LCtgTtg11AY.1110.000183
ORF1ab/nsp239L39LCtgTtg11AY.280.00189
ORF1ab/nsp239L39LCtgTtg11AY.4.10.000737
ORF1ab/nsp239L39LCtgTtg11AY.4.40.000409
ORF1ab/nsp239L39LCtgTtg11AY.410.000294
ORF1ab/nsp239L39LCtgTtg11AY.480.000465
ORF1ab/nsp239L39LCtgTtg11AY.520.000814
ORF1ab/nsp239L39LCtgTtg11AY.550.000917
ORF1ab/nsp239L39LCtgTtg11AY.580.000907
ORF1ab/nsp239L39LCtgTtg11AY.730.000665
ORF1ab/nsp239L39LCtgTtg11AY.740.000116
ORF1ab/nsp239L39LCtgTtg11AY.850.000427
ORF1ab/nsp239L39LCtgTtg11AY.880.000884
ORF1ab/nsp239L39LCtgTtg11AY.91.10.004065
ORF1ab/nsp239L39LCtgTtg11AY.960.002075
ORF1ab/nsp239L39LCtgTtg11AZ.20.000821
ORF1ab/nsp239L39LCtgTtg11B.1.1.1280.007092
ORF1ab/nsp239L39LCtgTtg11B.1.1.1410.002012
ORF1ab/nsp239L39LCtgTtg11B.1.1.2100.005714
ORF1ab/nsp239L39LCtgTtg11B.1.1.2200.001859
ORF1ab/nsp239L39LCtgTtg11B.1.1.2790.001121
ORF1ab/nsp239L39LCtgTtg11B.1.1.3370.003597
ORF1ab/nsp239L39LCtgTtg11B.1.1.3560.008547
ORF1ab/nsp239L39LCtgTtg11B.1.1.3970.002252
ORF1ab/nsp239L39LCtgTtg11B.1.1.4140.142857
ORF1ab/nsp239L39LCtgTtg11B.1.1.710.006061
ORF1ab/nsp239L39LCtgTtg11B.1.1110.001175
ORF1ab/nsp239L39LCtgTtg11B.1.177.200.001517
ORF1ab/nsp239L39LCtgTtg11B.1.177.320.00135
ORF1ab/nsp239L39LCtgTtg11B.1.177.450.000381
ORF1ab/nsp239L39LCtgTtg11B.1.177.460.000918
ORF1ab/nsp239L39LCtgTtg11B.1.177.730.000566
ORF1ab/nsp239L39LCtgTtg11B.1.2120.016667
ORF1ab/nsp239L39LCtgTtg11B.1.2180.005155
ORF1ab/nsp239L39LCtgTtg11B.1.2510.021739
ORF1ab/nsp239L39LCtgTtg11B.1.264.10.047619
ORF1ab/nsp239L39LCtgTtg11B.1.3580.05
ORF1ab/nsp239L39LCtgTtg11B.1.36.10.00114
ORF1ab/nsp239L39LCtgTtg11B.1.36.170.000494
ORF1ab/nsp239L39LCtgTtg11B.1.3660.004878
ORF1ab/nsp239L39LCtgTtg11B.1.3980.002976
ORF1ab/nsp239L39LCtgTtg11B.1.4240.008065
ORF1ab/nsp239L39LCtgTtg11B.1.4390.005917
ORF1ab/nsp239L39LCtgTtg11B.1.466.10.007194
ORF1ab/nsp239L39LCtgTtg11B.1.5030.002488
ORF1ab/nsp239L39LCtgTtg11B.1.5050.004386
ORF1ab/nsp239L39LCtgTtg11B.1.5240.001406
ORF1ab/nsp239L39LCtgTtg11B.1.5440.006024
ORF1ab/nsp239L39LCtgTtg11B.1.5640.000426
ORF1ab/nsp239L39LCtgTtg11B.1.5820.000491
ORF1ab/nsp239L39LCtgTtg11B.1.5990.00365
ORF1ab/nsp239L39LCtgTtg11B.1.619.10.000641
ORF1ab/nsp239L39LCtgTtg11B.1.621.10.000506
ORF1ab/nsp239L39LCtgTtg11B.1.6230.000536
ORF1ab/nsp239L39LCtgTtg11B.400.000364
ORF1ab/nsp239L39LCtgTtg11B.500.111111
ORF1ab/nsp239L39LCtgTtg11N.50.001767

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.