CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 39 | L39L | L219L | syn | Ctg | Ttg | 11141 | 6725 | 0.603626 | 920-922 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 6725 | 11141 | All | 0.001286 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1657 | 1898 | B.1.1.7 | 0.001483 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 416 | 627 | AY.4 | 0.000647 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 559 | 561 | D.2 | 0.041948 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 370 | 418 | AY.44 | 0.002252 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 124 | 411 | B.1.617.2 | 0.000467 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 385 | 403 | B.1.429 | 0.009059 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 323 | B.1.36 | 0.000438 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 240 | 318 | AY.103 | 0.00149 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 47 | 266 | P.1 | 0.00074 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 8 | 250 | AY.98.1 | 0.000387 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 246 | 248 | B.1.258 | 0.016371 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 187 | 228 | B.1.2 | 0.001647 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 188 | 212 | B.1.177 | 0.002476 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 212 | 212 | B.1.448 | 0.55643 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 128 | 179 | B.1 | 0.001172 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 151 | 159 | AY.120 | 0.005614 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 102 | 141 | AY.3 | 0.001015 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 101 | 117 | B.1.637 | 0.00738 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 63 | 115 | AY.43 | 0.000279 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 27 | 114 | B.1.596 | 0.002353 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 74 | 102 | B.1.1 | 0.001342 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 67 | 73 | B.1.160 | 0.00209 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 67 | 71 | AY.20 | 0.002604 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 66 | B.1.1.214 | 0.000166 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 64 | 65 | B.1.609 | 0.030681 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 60 | 62 | C.16 | 0.063627 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 29 | 55 | AY.39 | 0.000717 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 35 | 54 | AY.39.1 | 0.001386 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 52 | 52 | B.1.438.2 | 1 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 37 | 51 | AY.25 | 0.000223 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 38 | 50 | B.1.526 | 0.000893 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 17 | 49 | AY.102 | 0.000451 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 29 | 49 | AY.99.2 | 0.002673 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 44 | 48 | AY.47 | 0.001369 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 32 | 44 | B.1.621 | 0.002833 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 17 | 41 | Q.3 | 0.002466 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 33 | 39 | AY.5 | 0.000681 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 11 | 38 | AY.100 | 0.000506 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 36 | 37 | AY.36 | 0.005336 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 26 | 35 | AY.26 | 0.000736 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 34 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 34 | 34 | B.1.258.14 | 0.033333 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 33 | AY.29 | 0.000063 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 27 | 33 | B.1.351 | 0.000803 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 22 | 30 | AY.61 | 0.002305 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 30 | 30 | B.1.243 | 0.002088 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 29 | AY.33 | 0.000267 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 24 | 28 | B.1.221 | 0.001705 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 10 | 26 | B.1.1.519 | 0.000397 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 17 | 26 | B.1.427 | 0.000858 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 24 | 24 | AY.113 | 0.003417 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 22 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 17 | 21 | AY.4.2 | 0.000369 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 14 | 21 | P.1.14 | 0.000669 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 17 | 17 | B.1.438.1 | 0.001823 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 13 | 16 | B.1.1.28 | 0.004046 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 13 | 15 | AY.75.1 | 0.002344 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 14 | 15 | B.1.1.317 | 0.005764 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 15 | B.1.1.434 | 0.000349 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 14 | AY.23 | 0.000209 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 13 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 11 | 13 | AY.9 | 0.000744 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 13 | B.1.1.1 | 0.001307 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 13 | 13 | B.1.409 | 0.010156 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 12 | AY.9.2 | 0.00011 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 9 | 12 | B.1.240 | 0.00194 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 11 | 12 | B.1.499 | 0.011555 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 11 | AY.106 | 0.000335 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 5 | 11 | AY.42 | 0.000201 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 9 | 11 | AY.45 | 0.001095 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 11 | 11 | AY.99 | 0.011542 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 11 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 10 | 11 | C.37 | 0.001161 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 10 | 10 | B.1.600 | 0.05848 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 9 | AY.29.1 | 0.000662 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 9 | B.1.177.44 | 0.001038 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 6 | 9 | B.1.369 | 0.001711 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 9 | B.1.470 | 0.001404 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 9 | 9 | C.23 | 0.052326 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 9 | 9 | P.1.15 | 0.002091 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 7 | 8 | AY.12 | 0.002212 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 8 | 8 | B.1.1.39 | 0.004077 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 6 | 8 | B.1.258.17 | 0.000624 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 7 | 7 | AD.2 | 0.001533 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 7 | AY.119 | 0.000141 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 7 | AY.34 | 0.000194 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 7 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 5 | 7 | AY.6 | 0.000206 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 5 | 7 | AY.75 | 0.00028 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 7 | B.1.236 | 0.002053 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 6 | 7 | B.1.36.29 | 0.003104 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 6 | 7 | Q.1 | 0.000758 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 6 | AY.118 | 0.000125 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 6 | 6 | AY.60 | 0.005629 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 6 | 6 | AY.7 | 0.001176 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 6 | B.1.438 | 0.026144 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 6 | 6 | Q.8 | 0.000989 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 5 | AY.117 | 0.000169 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 5 | 5 | B.1.1.176 | 0.002197 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 5 | B.1.1.25 | 0.001137 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 5 | B.1.1.277 | 0.003035 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 5 | B.1.1.284 | 0.000215 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 5 | B.1.1.63 | 0.001543 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 5 | 5 | B.1.177.62 | 0.005959 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 5 | B.1.177.7 | 0.000659 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 5 | 5 | B.1.9 | 0.030864 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 5 | C.36 | 0.003643 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 5 | 5 | P.1.7 | 0.001596 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 4 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 4 | AY.3.1 | 0.000256 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 4 | B.1.1.216 | 0.002671 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 4 | B.1.1.428 | 0.037736 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 4 | B.1.1.485 | 0.066667 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 4 | B.1.110.3 | 0.002874 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 4 | B.1.177.21 | 0.000153 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 4 | B.1.177.79 | 0.009368 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 4 | B.1.177.86 | 0.000734 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 4 | B.1.265 | 0.005083 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 4 | B.1.558 | 0.018265 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 4 | P.2 | 0.00056 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 3 | AY.114 | 0.000462 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 3 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 3 | AY.16.1 | 0.00094 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 3 | AY.35 | 0.000466 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 3 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 3 | AY.5.3 | 0.000675 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 3 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 3 | B.1.1.187 | 0.026549 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 3 | B.1.1.376 | 0.017857 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 3 | B.1.36.31 | 0.005254 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 3 | B.1.466.2 | 0.000782 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 3 | B.1.595 | 0.000522 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | AP.1 | 0.003003 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 2 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 2 | B.1.1.189 | 0.001513 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 2 | B.1.1.311 | 0.000358 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.1.315 | 0.016949 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.1.389 | 0.012121 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.1.466 | 0.017391 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 2 | B.1.1.54 | 0.003021 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.104 | 0.00738 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.177.36 | 0.032258 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.177.56 | 0.001335 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.195 | 0.01005 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.393 | 0.057143 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.429.1 | 0.024096 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 2 | B.1.480 | 0.002488 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 2 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.93 | 0.001867 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 2 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.91.1 | 0.004065 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.1.128 | 0.007092 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.1.356 | 0.008547 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.1.414 | 0.142857 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.212 | 0.016667 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.251 | 0.021739 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.264.1 | 0.047619 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.358 | 0.05 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.424 | 0.008065 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.505 | 0.004386 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.50 | 0.111111 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | N.5 | 0.001767 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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