CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 39 & Codon = Atg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp239L39ML219MnonsynCtgAtg4064061920-922

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp239L39MCtgAtg406406All0.000078
ORF1ab/nsp239L39MCtgAtg228228B.1.1.70.000204
ORF1ab/nsp239L39MCtgAtg3131AY.40.000048
ORF1ab/nsp239L39MCtgAtg2626AY.440.000158
ORF1ab/nsp239L39MCtgAtg1212B.1.617.20.000045
ORF1ab/nsp239L39MCtgAtg1111AY.50.000227
ORF1ab/nsp239L39MCtgAtg1010AY.3.10.000853
ORF1ab/nsp239L39MCtgAtg99AY.30.00009
ORF1ab/nsp239L39MCtgAtg88B.1.1600.00025
ORF1ab/nsp239L39MCtgAtg77B.1.4270.000353
ORF1ab/nsp239L39MCtgAtg55B.1.5250.000566
ORF1ab/nsp239L39MCtgAtg44AY.250.000024
ORF1ab/nsp239L39MCtgAtg44AY.46.40.000658
ORF1ab/nsp239L39MCtgAtg33AY.430.000013
ORF1ab/nsp239L39MCtgAtg33B.1.3510.000089
ORF1ab/nsp239L39MCtgAtg22AY.1020.000053
ORF1ab/nsp239L39MCtgAtg22AY.1030.000012
ORF1ab/nsp239L39MCtgAtg22AY.39.10.000079
ORF1ab/nsp239L39MCtgAtg22AY.420.00008
ORF1ab/nsp239L39MCtgAtg22B.10.000018
ORF1ab/nsp239L39MCtgAtg11AY.1000.000046
ORF1ab/nsp239L39MCtgAtg11AY.1170.000085
ORF1ab/nsp239L39MCtgAtg11AY.1190.000035
ORF1ab/nsp239L39MCtgAtg11AY.200.000039
ORF1ab/nsp239L39MCtgAtg11AY.29.10.000221
ORF1ab/nsp239L39MCtgAtg11AY.460.000104
ORF1ab/nsp239L39MCtgAtg11AY.540.000095
ORF1ab/nsp239L39MCtgAtg11AY.60.000041
ORF1ab/nsp239L39MCtgAtg11AY.70.000196
ORF1ab/nsp239L39MCtgAtg11AY.750.000056
ORF1ab/nsp239L39MCtgAtg11AY.9.10.000084
ORF1ab/nsp239L39MCtgAtg11AY.910.00073
ORF1ab/nsp239L39MCtgAtg11AY.98.10.000048
ORF1ab/nsp239L39MCtgAtg11AY.990.001049
ORF1ab/nsp239L39MCtgAtg11AY.99.20.000092
ORF1ab/nsp239L39MCtgAtg11B.1.10.000018
ORF1ab/nsp239L39MCtgAtg11B.1.1.2140.000055
ORF1ab/nsp239L39MCtgAtg11B.1.1.2770.000759
ORF1ab/nsp239L39MCtgAtg11B.1.1.3700.012658
ORF1ab/nsp239L39MCtgAtg11B.1.1.3720.000689
ORF1ab/nsp239L39MCtgAtg11B.1.1.5230.001563
ORF1ab/nsp239L39MCtgAtg11B.1.1.700.000341
ORF1ab/nsp239L39MCtgAtg11B.1.1.820.038462
ORF1ab/nsp239L39MCtgAtg11B.1.1770.000013
ORF1ab/nsp239L39MCtgAtg11B.1.20.000009
ORF1ab/nsp239L39MCtgAtg11B.1.5260.000024
ORF1ab/nsp239L39MCtgAtg11B.1.5650.00081
ORF1ab/nsp239L39MCtgAtg11B.1.5760.000907
ORF1ab/nsp239L39MCtgAtg11B.1.5960.000087
ORF1ab/nsp239L39MCtgAtg11B.1.617.10.000129
ORF1ab/nsp239L39MCtgAtg11B.1.6370.000073
ORF1ab/nsp239L39MCtgAtg11B.550.00295
ORF1ab/nsp239L39MCtgAtg11P.1.140.000048
ORF1ab/nsp239L39MCtgAtg11P.1.150.000232
ORF1ab/nsp239L39MCtgAtg11P.1.70.000319