CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 39 | L39L | L219L | syn | Ctg | Ttg | 11141 | 6725 | 0.603626 | 920-922 |
ORF1ab/nsp2 | 39 | L39L | L219L | syn | ctG | ctA | 11141 | 2555 | 0.229333 | 920-922 |
ORF1ab/nsp2 | 39 | L39L | L219L | syn | ctG | ctT | 11141 | 1825 | 0.163809 | 920-922 |
ORF1ab/nsp2 | 39 | L39L | L219L | syn | ctG | ctC | 11141 | 35 | 0.00314155 | 920-922 |
ORF1ab/nsp2 | 39 | L39L | L219L | syn | CtG | TtA | 11141 | 1 | 0.0000897585 | 920-922 |
ORF1ab/nsp2 | 39 | L39M | L219M | nonsyn | Ctg | Atg | 406 | 406 | 1 | 920-922 |
ORF1ab/nsp2 | 39 | L39Q | L219Q | nonsyn | cTg | cAg | 45 | 45 | 1 | 920-922 |
ORF1ab/nsp2 | 39 | L39del | L219del | del | CTG | --- | 35 | 35 | 1 | 920-922 |
ORF1ab/nsp2 | 39 | L39V | L219V | nonsyn | Ctg | Gtg | 13 | 13 | 1 | 920-922 |
ORF1ab/nsp2 | 39 | L39R | L219R | nonsyn | cTg | cGg | 13 | 13 | 1 | 920-922 |
ORF1ab/nsp2 | 39 | L39del1 | L219del1 | del | ctG | ct- | 3 | 3 | 1 | 920-922 |
ORF1ab/nsp2 | 39 | L39F | L219F | nonsyn | CtG | TtT | 3 | 3 | 1 | 920-922 |
ORF1ab/nsp2 | 39 | L39T | L219T | nonsyn | CTg | ACg | 3 | 3 | 1 | 920-922 |
ORF1ab/nsp2 | 39 | L39P | L219P | nonsyn | cTg | cCg | 3 | 3 | 1 | 920-922 |
ORF1ab/nsp2 | 39 | L39W | L219W | nonsyn | CTg | TGg | 2 | 2 | 1 | 920-922 |
ORF1ab/nsp2 | 39 | L39I | L219I | nonsyn | CtG | AtC | 1 | 1 | 1 | 920-922 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 6725 | 11141 | All | 0.001286 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 2555 | 11141 | All | 0.000489 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1825 | 11141 | All | 0.000349 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctC | 35 | 11141 | All | 0.000007 |
ORF1ab/nsp2 | 39 | L39L | CtG | TtA | 1 | 11141 | All | 0 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1657 | 1898 | B.1.1.7 | 0.001483 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 165 | 1898 | B.1.1.7 | 0.000148 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 75 | 1898 | B.1.1.7 | 0.000067 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctC | 1 | 1898 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1305 | 1305 | B.1.36.27 | 0.996183 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 416 | 627 | AY.4 | 0.000647 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 112 | 627 | AY.4 | 0.000174 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 99 | 627 | AY.4 | 0.000154 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 559 | 561 | D.2 | 0.041948 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 561 | D.2 | 0.00015 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 370 | 418 | AY.44 | 0.002252 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 25 | 418 | AY.44 | 0.000152 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 23 | 418 | AY.44 | 0.00014 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 176 | 411 | B.1.617.2 | 0.000663 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 124 | 411 | B.1.617.2 | 0.000467 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 108 | 411 | B.1.617.2 | 0.000407 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctC | 3 | 411 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 406 | 406 | All | 0.000078 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 385 | 403 | B.1.429 | 0.009059 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 14 | 403 | B.1.429 | 0.000329 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 4 | 403 | B.1.429 | 0.000094 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 312 | 323 | B.1.36 | 0.045521 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 8 | 323 | B.1.36 | 0.001167 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 323 | B.1.36 | 0.000438 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 240 | 318 | AY.103 | 0.00149 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 60 | 318 | AY.103 | 0.000373 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 18 | 318 | AY.103 | 0.000112 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 161 | 266 | P.1 | 0.002536 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 47 | 266 | P.1 | 0.00074 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 45 | 266 | P.1 | 0.000709 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctC | 13 | 266 | P.1 | 0.000205 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 242 | 250 | AY.98.1 | 0.01172 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 8 | 250 | AY.98.1 | 0.000387 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 246 | 248 | B.1.258 | 0.016371 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 248 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 248 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 228 | 228 | B.1.1.7 | 0.000204 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 187 | 228 | B.1.2 | 0.001647 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 25 | 228 | B.1.2 | 0.00022 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 16 | 228 | B.1.2 | 0.000141 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 188 | 212 | B.1.177 | 0.002476 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 13 | 212 | B.1.177 | 0.000171 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 11 | 212 | B.1.177 | 0.000145 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 212 | 212 | B.1.448 | 0.55643 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 128 | 179 | B.1 | 0.001172 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 31 | 179 | B.1 | 0.000284 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 20 | 179 | B.1 | 0.000183 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 151 | 159 | AY.120 | 0.005614 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 8 | 159 | AY.120 | 0.000297 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 150 | 150 | C.2.1 | 1 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 102 | 141 | AY.3 | 0.001015 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 36 | 141 | AY.3 | 0.000358 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 3 | 141 | AY.3 | 0.00003 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 101 | 117 | B.1.637 | 0.00738 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 14 | 117 | B.1.637 | 0.001023 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 2 | 117 | B.1.637 | 0.000146 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 63 | 115 | AY.43 | 0.000279 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 44 | 115 | AY.43 | 0.000195 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 8 | 115 | AY.43 | 0.000035 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 86 | 114 | B.1.596 | 0.007494 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 27 | 114 | B.1.596 | 0.002353 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 114 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 74 | 102 | B.1.1 | 0.001342 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 19 | 102 | B.1.1 | 0.000345 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 9 | 102 | B.1.1 | 0.000163 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 67 | 73 | B.1.160 | 0.00209 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 6 | 73 | B.1.160 | 0.000187 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 67 | 71 | AY.20 | 0.002604 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 3 | 71 | AY.20 | 0.000117 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 71 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 62 | 66 | B.1.1.214 | 0.003438 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 66 | B.1.1.214 | 0.000166 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 66 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 64 | 65 | B.1.609 | 0.030681 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 65 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 62 | 62 | A | 0.023994 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 60 | 62 | C.16 | 0.063627 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 62 | C.16 | 0.002121 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 29 | 55 | AY.39 | 0.000717 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 25 | 55 | AY.39 | 0.000618 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 55 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 55 | 55 | AY.7.1 | 0.006199 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 35 | 54 | AY.39.1 | 0.001386 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 12 | 54 | AY.39.1 | 0.000475 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 7 | 54 | AY.39.1 | 0.000277 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 52 | 52 | B.1.438.2 | 1 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 37 | 51 | AY.25 | 0.000223 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 9 | 51 | AY.25 | 0.000054 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 5 | 51 | AY.25 | 0.00003 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 38 | 50 | B.1.526 | 0.000893 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 8 | 50 | B.1.526 | 0.000188 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 4 | 50 | B.1.526 | 0.000094 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 27 | 49 | AY.102 | 0.000716 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 17 | 49 | AY.102 | 0.000451 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 3 | 49 | AY.102 | 0.00008 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctC | 2 | 49 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 29 | 49 | AY.99.2 | 0.002673 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 18 | 49 | AY.99.2 | 0.001659 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 49 | AY.99.2 | 0.000184 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 44 | 48 | AY.47 | 0.001369 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 48 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 2 | 48 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 39 | L39Q | cTg | cAg | 45 | 45 | All | 0.000009 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 32 | 44 | B.1.621 | 0.002833 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctC | 9 | 44 | B.1.621 | 0.000797 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 3 | 44 | B.1.621 | 0.000266 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 24 | 41 | Q.3 | 0.003481 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 17 | 41 | Q.3 | 0.002466 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 33 | 39 | AY.5 | 0.000681 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 5 | 39 | AY.5 | 0.000103 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 39 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 25 | 38 | AY.100 | 0.00115 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 11 | 38 | AY.100 | 0.000506 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 38 | AY.100 | 0.000092 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 36 | 37 | AY.36 | 0.005336 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 37 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 39 | L39del | CTG | --- | 35 | 35 | All | 0.000007 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 26 | 35 | AY.26 | 0.000736 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 9 | 35 | AY.26 | 0.000255 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 32 | 34 | AY.9.1 | 0.002679 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 34 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 34 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 34 | 34 | B.1.258.14 | 0.033333 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 28 | 33 | AY.29 | 0.000442 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 33 | AY.29 | 0.000063 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 33 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 27 | 33 | B.1.351 | 0.000803 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 4 | 33 | B.1.351 | 0.000119 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 2 | 33 | B.1.351 | 0.000059 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 31 | 31 | AY.4 | 0.000048 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 31 | 31 | C.2 | 0.5 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 22 | 30 | AY.61 | 0.002305 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 7 | 30 | AY.61 | 0.000733 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 30 | AY.61 | 0.000105 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 30 | 30 | B.1.243 | 0.002088 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 24 | 29 | AY.33 | 0.001603 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 29 | AY.33 | 0.000267 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 29 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 24 | 28 | B.1.221 | 0.001705 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 4 | 28 | B.1.221 | 0.000284 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 26 | 26 | AY.44 | 0.000158 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 13 | 26 | B.1.1.519 | 0.000516 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 10 | 26 | B.1.1.519 | 0.000397 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 3 | 26 | B.1.1.519 | 0.000119 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 17 | 26 | B.1.427 | 0.000858 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 8 | 26 | B.1.427 | 0.000404 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 26 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 24 | 24 | AY.113 | 0.003417 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 18 | 22 | AY.121 | 0.002436 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 3 | 22 | AY.121 | 0.000406 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 22 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 17 | 21 | AY.4.2 | 0.000369 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 3 | 21 | AY.4.2 | 0.000065 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 21 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 21 | 21 | B.1.177.16 | 0.013953 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 14 | 21 | P.1.14 | 0.000669 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 7 | 21 | P.1.14 | 0.000335 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 17 | 17 | B.1.438.1 | 0.001823 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 13 | 16 | B.1.1.28 | 0.004046 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 3 | 16 | B.1.1.28 | 0.000934 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 13 | 15 | AY.75.1 | 0.002344 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 15 | AY.75.1 | 0.000361 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 14 | 15 | B.1.1.317 | 0.005764 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 15 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 14 | 15 | B.1.1.434 | 0.00488 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 15 | B.1.1.434 | 0.000349 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 11 | 14 | AY.23 | 0.000767 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 14 | AY.23 | 0.000209 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 14 | 14 | B.1.1.155 | 1 |
ORF1ab/nsp2 | 39 | L39Q | cTg | cAg | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp2 | 39 | L39R | cTg | cGg | 13 | 13 | All | 0.000002 |
ORF1ab/nsp2 | 39 | L39V | Ctg | Gtg | 13 | 13 | All | 0.000002 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 12 | 13 | AY.14 | 0.001056 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 13 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 11 | 13 | AY.9 | 0.000744 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 13 | AY.9 | 0.000135 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 9 | 13 | B.1.1.1 | 0.00294 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 13 | B.1.1.1 | 0.001307 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 13 | 13 | B.1.409 | 0.010156 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 6 | 12 | AY.9.2 | 0.00022 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 12 | AY.9.2 | 0.00011 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 3 | 12 | AY.9.2 | 0.00011 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 9 | 12 | B.1.240 | 0.00194 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 3 | 12 | B.1.240 | 0.000647 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 11 | 12 | B.1.499 | 0.011555 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 12 | B.1.499 | 0.00105 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 12 | 12 | B.1.617.2 | 0.000045 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 10 | 11 | AY.106 | 0.003349 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 11 | AY.106 | 0.000335 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 5 | 11 | AY.42 | 0.000201 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 5 | 11 | AY.42 | 0.000201 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctC | 1 | 11 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 9 | 11 | AY.45 | 0.001095 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctC | 2 | 11 | AY.45 | 0.000243 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 11 | 11 | AY.5 | 0.000227 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 11 | 11 | AY.99 | 0.011542 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 10 | 11 | B.1.1.306 | 0.004384 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 11 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 10 | 11 | C.37 | 0.001161 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 11 | C.37 | 0.000116 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 10 | 10 | AY.3.1 | 0.000853 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 10 | 10 | B.1.177.69 | 0.014837 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 10 | 10 | B.1.600 | 0.05848 |
ORF1ab/nsp2 | 39 | L39Q | cTg | cAg | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 4 | 9 | AY.29.1 | 0.000882 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 9 | AY.29.1 | 0.000662 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 2 | 9 | AY.29.1 | 0.000441 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 9 | 9 | AY.3 | 0.00009 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 7 | 9 | B.1.177.44 | 0.003633 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 9 | B.1.177.44 | 0.001038 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 6 | 9 | B.1.369 | 0.001711 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 3 | 9 | B.1.369 | 0.000856 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 8 | 9 | B.1.470 | 0.011236 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 9 | B.1.470 | 0.001404 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 9 | 9 | C.23 | 0.052326 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 9 | 9 | P.1.15 | 0.002091 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 7 | 8 | AY.12 | 0.002212 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 8 | AY.12 | 0.000316 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 8 | 8 | B.1.1.39 | 0.004077 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 6 | 8 | B.1.258.17 | 0.000624 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 8 | B.1.258.17 | 0.000208 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 8 | 8 | P.6 | 0.025157 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 7 | 7 | AD.2 | 0.001533 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 7 | AY.119 | 0.000141 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 7 | AY.119 | 0.000071 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 7 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 7 | AY.34 | 0.000194 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 2 | 7 | AY.34 | 0.000194 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 7 | AY.34 | 0.000194 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctC | 1 | 7 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 3 | 7 | AY.46 | 0.000312 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctC | 2 | 7 | AY.46 | 0.000208 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 7 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 7 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 6 | 7 | AY.5.4 | 0.00166 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 7 | AY.5.4 | 0.000277 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 5 | 7 | AY.6 | 0.000206 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 7 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 7 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 5 | 7 | AY.75 | 0.00028 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 7 | AY.75 | 0.000112 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 6 | 7 | B.1.236 | 0.01232 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 7 | B.1.236 | 0.002053 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 6 | 7 | B.1.36.29 | 0.003104 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 7 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 7 | 7 | B.1.427 | 0.000353 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 6 | 7 | Q.1 | 0.000758 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 7 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 3 | 6 | AY.118 | 0.000188 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 6 | AY.118 | 0.000125 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 6 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 6 | 6 | AY.60 | 0.005629 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 6 | 6 | AY.7 | 0.001176 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 6 | B.1.438 | 0.026144 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 6 | B.1.438 | 0.013072 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 6 | 6 | B.1.468 | 0.034286 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 6 | 6 | Q.8 | 0.000989 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 5 | AY.117 | 0.000169 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 5 | AY.117 | 0.000169 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 5 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 5 | 5 | B.1.1.176 | 0.002197 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 5 | B.1.1.25 | 0.001137 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 5 | B.1.1.25 | 0.001137 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 5 | B.1.1.25 | 0.000569 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 5 | B.1.1.277 | 0.003035 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 5 | B.1.1.277 | 0.000759 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 3 | 5 | B.1.1.284 | 0.000322 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 5 | B.1.1.284 | 0.000215 |
ORF1ab/nsp2 | 39 | L39del | CTG | --- | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 5 | B.1.1.63 | 0.001543 |
ORF1ab/nsp2 | 39 | L39L | CtG | TtA | 1 | 5 | B.1.1.63 | 0.000386 |
ORF1ab/nsp2 | 39 | L39del | CTG | --- | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 5 | 5 | B.1.177.62 | 0.005959 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 5 | B.1.177.7 | 0.000659 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 5 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 5 | 5 | B.1.311 | 0.001373 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 5 | 5 | B.1.525 | 0.000566 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 5 | 5 | B.1.9 | 0.030864 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 5 | C.36 | 0.003643 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 5 | C.36 | 0.000911 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 5 | 5 | P.1.7 | 0.001596 |
ORF1ab/nsp2 | 39 | L39V | Ctg | Gtg | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 4 | AY.24 | 0.000862 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 4 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 4 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 4 | AY.3.1 | 0.000256 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 4 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp2 | 39 | L39Q | cTg | cAg | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 4 | 4 | AY.69 | 0.000747 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 3 | 4 | AY.77 | 0.003382 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 4 | AY.77 | 0.001127 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 4 | B.1.1.216 | 0.002671 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 4 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp2 | 39 | L39del | CTG | --- | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 4 | B.1.1.428 | 0.037736 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 4 | B.1.1.485 | 0.066667 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 4 | B.1.110.3 | 0.002874 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 4 | B.1.177.21 | 0.000153 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 4 | B.1.177.21 | 0.000153 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 4 | B.1.177.79 | 0.009368 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 4 | B.1.177.86 | 0.000734 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 4 | B.1.234 | 0.000264 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 2 | 4 | B.1.234 | 0.000264 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 4 | B.1.265 | 0.005083 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 4 | 4 | B.1.558 | 0.018265 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 4 | P.2 | 0.00056 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 4 | P.2 | 0.000187 |
ORF1ab/nsp2 | 39 | L39del1 | ctG | ct- | 3 | 3 | All | 0.000001 |
ORF1ab/nsp2 | 39 | L39P | cTg | cCg | 3 | 3 | All | 0.000001 |
ORF1ab/nsp2 | 39 | L39F | CtG | TtT | 3 | 3 | All | 0.000001 |
ORF1ab/nsp2 | 39 | L39T | CTg | ACg | 3 | 3 | All | 0.000001 |
ORF1ab/nsp2 | 39 | L39Q | cTg | cAg | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp2 | 39 | L39Q | cTg | cAg | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 3 | AY.109 | 0.001479 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 3 | AY.109 | 0.00074 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 3 | AY.114 | 0.000462 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 3 | AY.114 | 0.000231 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 3 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 3 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 3 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 3 | AY.16.1 | 0.00094 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 3 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 39 | L39Q | cTg | cAg | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 3 | 3 | AY.34.1 | 0.00153 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 3 | AY.35 | 0.000466 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 3 | AY.35 | 0.000233 |
ORF1ab/nsp2 | 39 | L39R | cTg | cGg | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 39 | L39del1 | ctG | ct- | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 3 | 3 | AY.46.3 | 0.002801 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 3 | AY.46.6 | 0.000144 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 3 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 3 | AY.5.3 | 0.000675 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 3 | AY.5.3 | 0.000337 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 2 | 3 | AY.98 | 0.000158 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 3 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 3 | B.1.1.187 | 0.026549 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 2 | 3 | B.1.1.33 | 0.000842 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 3 | B.1.1.33 | 0.000421 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 3 | B.1.1.376 | 0.017857 |
ORF1ab/nsp2 | 39 | L39T | CTg | ACg | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp2 | 39 | L39V | Ctg | Gtg | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp2 | 39 | L39V | Ctg | Gtg | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 3 | 3 | B.1.260 | 0.010033 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 3 | 3 | B.1.36.31 | 0.005254 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 3 | B.1.466.2 | 0.000782 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 3 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 3 | B.1.595 | 0.000522 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 3 | B.1.595 | 0.000261 |
ORF1ab/nsp2 | 39 | L39W | CTg | TGg | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | AP.1 | 0.003003 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp2 | 39 | L39R | cTg | cGg | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp2 | 39 | L39del | CTG | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | AY.68 | 0.000547 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 2 | 2 | AY.80 | 0.002257 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 2 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 2 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | AY.95 | 0.001522 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 39 | L39P | cTg | cCg | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.1.153 | 0.002191 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 2 | B.1.1.189 | 0.001513 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 2 | B.1.1.189 | 0.001513 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.1.263 | 0.003115 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 2 | B.1.1.311 | 0.000358 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 2 | B.1.1.311 | 0.000358 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.1.315 | 0.016949 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.1.389 | 0.012121 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.1.466 | 0.017391 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.1.50 | 0.001358 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 2 | B.1.1.54 | 0.003021 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 2 | B.1.1.54 | 0.003021 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.104 | 0.00738 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 2 | 2 | B.1.142 | 0.005797 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 2 | B.1.147 | 0.001512 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.177.36 | 0.032258 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.177.56 | 0.001335 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.195 | 0.01005 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 2 | 2 | B.1.36.16 | 0.002849 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.393 | 0.057143 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.429.1 | 0.024096 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 2 | 2 | B.1.466 | 0.046512 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 2 | B.1.480 | 0.002488 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 2 | B.1.480 | 0.002488 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 2 | B.1.527 | 0.007407 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 2 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 2 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 39 | L39del | CTG | --- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | B.1.93 | 0.001867 |
ORF1ab/nsp2 | 39 | L39Q | cTg | cAg | 2 | 2 | B.41 | 0.016 |
ORF1ab/nsp2 | 39 | L39del | CTG | --- | 2 | 2 | N.4 | 0.008511 |
ORF1ab/nsp2 | 39 | L39del | CTG | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 39 | L39F | CtG | TtT | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 2 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 2 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 2 | 2 | P.1.17 | 0.000324 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 2 | 2 | P.1.8 | 0.009569 |
ORF1ab/nsp2 | 39 | L39del | CTG | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp2 | 39 | L39del | CTG | --- | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 1 | A.2.3 | 0.004739 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | A.2.5.3 | 0.010309 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp2 | 39 | L39I | CtG | AtC | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 39 | L39F | CtG | TtT | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 39 | L39R | cTg | cGg | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 39 | L39V | Ctg | Gtg | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp2 | 39 | L39del | CTG | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 39 | L39Q | cTg | cAg | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 39 | L39V | Ctg | Gtg | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 39 | L39del | CTG | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp2 | 39 | L39Q | cTg | cAg | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp2 | 39 | L39del | CTG | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 39 | L39R | cTg | cGg | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 39 | L39Q | cTg | cAg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 39 | L39R | cTg | cGg | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 1 | AY.7.2 | 0.000559 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.91.1 | 0.004065 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp2 | 39 | L39W | CTg | TGg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 39 | L39del | CTG | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 39 | L39Q | cTg | cAg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.1.128 | 0.007092 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 1 | B.1.1.203 | 0.016949 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 1 | B.1.1.286 | 0.002899 |
ORF1ab/nsp2 | 39 | L39Q | cTg | cAg | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.1.356 | 0.008547 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | B.1.1.370 | 0.012658 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.1.397 | 0.002252 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.1.414 | 0.142857 |
ORF1ab/nsp2 | 39 | L39del | CTG | --- | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 1 | B.1.1.526 | 0.003546 |
ORF1ab/nsp2 | 39 | L39V | Ctg | Gtg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 39 | L39R | cTg | cGg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 39 | L39W | CTg | TGg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.1.71 | 0.006061 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | B.1.1.82 | 0.038462 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 1 | B.1.160.23 | 0.004831 |
ORF1ab/nsp2 | 39 | L39R | cTg | cGg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.177.45 | 0.000381 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 1 | B.1.177.48 | 0.003125 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 1 | B.1.177.51 | 0.004566 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 39 | L39del | CTG | --- | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 1 | B.1.190 | 0.01 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.212 | 0.016667 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 1 | B.1.229 | 0.009709 |
ORF1ab/nsp2 | 39 | L39del | CTG | --- | 1 | 1 | B.1.23 | 0.006061 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.251 | 0.021739 |
ORF1ab/nsp2 | 39 | L39R | cTg | cGg | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.264.1 | 0.047619 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.358 | 0.05 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 1 | B.1.36.34 | 0.021277 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.366 | 0.004878 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 1 | B.1.408 | 0.00369 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.424 | 0.008065 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp2 | 39 | L39del | CTG | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.466.1 | 0.007194 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 1 | B.1.495 | 0.009091 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.505 | 0.004386 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.524 | 0.001406 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctC | 1 | 1 | B.1.531 | 0.083333 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.544 | 0.006024 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 1 | B.1.570 | 0.002941 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 1 | B.1.590 | 0.004545 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 39 | L39R | cTg | cGg | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 39 | L39del | CTG | --- | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.1.623 | 0.000536 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 39 | L39P | cTg | cCg | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | B.50 | 0.111111 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 1 | C.26 | 0.007353 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp2 | 39 | L39del | CTG | --- | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp2 | 39 | L39R | cTg | cGg | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 39 | L39L | Ctg | Ttg | 1 | 1 | N.5 | 0.001767 |
ORF1ab/nsp2 | 39 | L39Q | cTg | cAg | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 1 | P.1.10.2 | 0.041667 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctA | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 39 | L39I | CtG | AtC | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 39 | L39M | Ctg | Atg | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp2 | 39 | L39L | ctG | ctT | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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