CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 371

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2371T371IT551InonsynaCtaTt200220010.9995011916-1918
ORF1ab/nsp2371T371IT551InonsynaCTaTC200210.00049951916-1918
ORF1ab/nsp2371T371TT551TsynacTacC6555860.8946561916-1918
ORF1ab/nsp2371T371TT551TsynacTacG655430.06564891916-1918
ORF1ab/nsp2371T371TT551TsynacTacA655260.03969471916-1918
ORF1ab/nsp2371T371NT551NnonsynaCtaAt16316311916-1918
ORF1ab/nsp2371T371AT551AnonsynActGct14314311916-1918
ORF1ab/nsp2371T371ST551SnonsynActTct1051000.9523811916-1918
ORF1ab/nsp2371T371ST551SnonsynaCtaGt10550.0476191916-1918
ORF1ab/nsp2371T371delT551deldelACT---505011916-1918
ORF1ab/nsp2371T371PT551PnonsynActCct8811916-1918
ORF1ab/nsp2371T371del1T551del1delacTac-2211916-1918
ORF1ab/nsp2371T371del2T551del2delaCTa--1111916-1918
ORF1ab/nsp2371T371RT551RnonsynACTCGA1111916-1918

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2371T371IaCtaTt20012002All0.000383
ORF1ab/nsp2371T371IaCTaTC12002All0
ORF1ab/nsp2371T371IaCtaTt795795B.1.1.70.000712
ORF1ab/nsp2371T371TacTacC586655All0.000112
ORF1ab/nsp2371T371TacTacG43655All0.000008
ORF1ab/nsp2371T371TacTacA26655All0.000005
ORF1ab/nsp2371T371IaCtaTt321321AY.540.030606
ORF1ab/nsp2371T371IaCtaTt286286B.1.3321
ORF1ab/nsp2371T371TacTacC252263B.1.1.70.000226
ORF1ab/nsp2371T371TacTacA8263B.1.1.70.000007
ORF1ab/nsp2371T371TacTacG3263B.1.1.70.000003
ORF1ab/nsp2371T371TacTacC168168B.1.4390.994083
ORF1ab/nsp2371T371NaCtaAt163163All0.000031
ORF1ab/nsp2371T371AActGct143143All0.000027
ORF1ab/nsp2371T371SActTct100105All0.000019
ORF1ab/nsp2371T371SaCtaGt5105All0.000001
ORF1ab/nsp2371T371SActTct9191AY.440.000554
ORF1ab/nsp2371T371AActGct7777B.1.3690.021962
ORF1ab/nsp2371T371IaCtaTt7575B.1.617.20.000282
ORF1ab/nsp2371T371IaCtaTt6565B.10.000595
ORF1ab/nsp2371T371delACT---5050All0.00001
ORF1ab/nsp2371T371TacTacG3047AY.40.000047
ORF1ab/nsp2371T371TacTacC1747AY.40.000026
ORF1ab/nsp2371T371IaCtaTt4444B.1.1770.000579
ORF1ab/nsp2371T371TacTacC4040B.1.5750.012136
ORF1ab/nsp2371T371IaCtaTt3535AY.40.000054
ORF1ab/nsp2371T371IaCtaTt3131B.1.1.2940.039241
ORF1ab/nsp2371T371IaCtaTt2929C.36.21
ORF1ab/nsp2371T371NaCtaAt2828B.1.617.20.000105
ORF1ab/nsp2371T371IaCtaTt2727AY.1030.000168
ORF1ab/nsp2371T371NaCtaAt2323AY.39.10.000911
ORF1ab/nsp2371T371NaCtaAt2121AY.40.000033
ORF1ab/nsp2371T371NaCtaAt2020P.1.80.095694
ORF1ab/nsp2371T371TacTacC1919B.1.220.025033
ORF1ab/nsp2371T371TacTacC1718B.1.617.20.000064
ORF1ab/nsp2371T371TacTacA118B.1.617.20.000004
ORF1ab/nsp2371T371IaCtaTt1818Q.80.002968
ORF1ab/nsp2371T371IaCtaTt1617B.1.20.000141
ORF1ab/nsp2371T371IaCTaTC117B.1.20.000009
ORF1ab/nsp2371T371TacTacC1215AY.440.000073
ORF1ab/nsp2371T371TacTacA215AY.440.000012
ORF1ab/nsp2371T371TacTacG115AY.440.000006
ORF1ab/nsp2371T371NaCtaAt1414AY.260.000396
ORF1ab/nsp2371T371IaCtaTt1414AY.430.000062
ORF1ab/nsp2371T371AActGct1414B.1.1.70.000013
ORF1ab/nsp2371T371IaCtaTt1414B.1.2580.000932
ORF1ab/nsp2371T371IaCtaTt1313B.1.177.600.00284
ORF1ab/nsp2371T371IaCtaTt1313P.10.000205
ORF1ab/nsp2371T371IaCtaTt1212AY.390.000297
ORF1ab/nsp2371T371IaCtaTt1212C.370.001393
ORF1ab/nsp2371T371IaCtaTt1111AY.250.000066
ORF1ab/nsp2371T371delACT---1111B.1.1.70.00001
ORF1ab/nsp2371T371IaCtaTt1010AY.30.000099
ORF1ab/nsp2371T371IaCtaTt1010AY.90.000676
ORF1ab/nsp2371T371IaCtaTt1010B.1.10.000181
ORF1ab/nsp2371T371AActGct1010B.1.1.5120.285714
ORF1ab/nsp2371T371NaCtaAt99B.1.1.70.000008
ORF1ab/nsp2371T371PActCct88All0.000002
ORF1ab/nsp2371T371IaCtaTt88AY.330.000534
ORF1ab/nsp2371T371NaCtaAt88AY.440.000049
ORF1ab/nsp2371T371IaCtaTt88AY.610.000838
ORF1ab/nsp2371T371IaCtaTt88P.1.140.000382
ORF1ab/nsp2371T371NaCtaAt77AY.1020.000186
ORF1ab/nsp2371T371IaCtaTt77B.1.258.170.000728
ORF1ab/nsp2371T371NaCtaAt77P.10.00011
ORF1ab/nsp2371T371NaCtaAt66AY.1130.000854
ORF1ab/nsp2371T371TacTacC56B.10.000046
ORF1ab/nsp2371T371TacTacA16B.10.000009
ORF1ab/nsp2371T371IaCtaTt66Q.10.000758
ORF1ab/nsp2371T371TacTacC55AY.1130.000712
ORF1ab/nsp2371T371TacTacG35AY.250.000018
ORF1ab/nsp2371T371TacTacC25AY.250.000012
ORF1ab/nsp2371T371TacTacA55AY.3.10.000426
ORF1ab/nsp2371T371AActGct55AY.440.00003
ORF1ab/nsp2371T371IaCtaTt55AY.470.000156
ORF1ab/nsp2371T371IaCtaTt55AY.7.10.000564
ORF1ab/nsp2371T371IaCtaTt44AY.240.001724
ORF1ab/nsp2371T371IaCtaTt44AY.440.000024
ORF1ab/nsp2371T371IaCtaTt44AY.46.50.000794
ORF1ab/nsp2371T371IaCtaTt44AY.570.002625
ORF1ab/nsp2371T371SaCtaGt44AY.630.001547
ORF1ab/nsp2371T371AActGct44B.1.1.10.001307
ORF1ab/nsp2371T371delACT---44B.1.1.330.001684
ORF1ab/nsp2371T371TacTacC44B.1.20.000035
ORF1ab/nsp2371T371IaCtaTt44B.1.221.20.016064
ORF1ab/nsp2371T371AActGct33AY.1000.000138
ORF1ab/nsp2371T371AActGct33AY.1020.00008
ORF1ab/nsp2371T371IaCtaTt33AY.1020.00008
ORF1ab/nsp2371T371TacTacC23AY.1020.000053
ORF1ab/nsp2371T371TacTacA13AY.1020.000027
ORF1ab/nsp2371T371NaCtaAt33AY.1030.000019
ORF1ab/nsp2371T371IaCtaTt33AY.1130.000427
ORF1ab/nsp2371T371TacTacA23AY.30.00002
ORF1ab/nsp2371T371TacTacC13AY.30.00001
ORF1ab/nsp2371T371IaCtaTt33AY.360.000445
ORF1ab/nsp2371T371TacTacC23AY.390.000049
ORF1ab/nsp2371T371TacTacG13AY.390.000025
ORF1ab/nsp2371T371IaCtaTt33AY.4.20.000065
ORF1ab/nsp2371T371PActCct33AY.440.000018
ORF1ab/nsp2371T371IaCtaTt33AY.590.001589
ORF1ab/nsp2371T371delACT---33B.10.000027
ORF1ab/nsp2371T371AActGct33B.10.000027
ORF1ab/nsp2371T371TacTacC33B.1.10.000054
ORF1ab/nsp2371T371delACT---33B.1.1.3480.002389
ORF1ab/nsp2371T371delACT---33B.1.1770.00004
ORF1ab/nsp2371T371IaCtaTt33B.1.2400.000647
ORF1ab/nsp2371T371TacTacC33B.1.4260.003027
ORF1ab/nsp2371T371IaCtaTt33B.1.4290.000071
ORF1ab/nsp2371T371AActGct33B.1.617.20.000011
ORF1ab/nsp2371T371delACT---33P.20.00056
ORF1ab/nsp2371T371del1acTac-22All0
ORF1ab/nsp2371T371TacTacC22AY.1140.000462
ORF1ab/nsp2371T371IaCtaTt22AY.1200.000074
ORF1ab/nsp2371T371IaCtaTt22AY.20.000712
ORF1ab/nsp2371T371SActTct12AY.250.000006
ORF1ab/nsp2371T371SaCtaGt12AY.250.000006
ORF1ab/nsp2371T371NaCtaAt22AY.390.000049
ORF1ab/nsp2371T371delACT---22AY.40.000003
ORF1ab/nsp2371T371delACT---22AY.4.50.000215
ORF1ab/nsp2371T371NaCtaAt22AY.430.000009
ORF1ab/nsp2371T371IaCtaTt22AY.580.001815
ORF1ab/nsp2371T371TacTacC22AY.750.000112
ORF1ab/nsp2371T371TacTacC22AY.75.10.000361
ORF1ab/nsp2371T371IaCtaTt22AY.9.20.000073
ORF1ab/nsp2371T371TacTacC22AY.98.10.000097
ORF1ab/nsp2371T371IaCtaTt22B.1.1.1900.1
ORF1ab/nsp2371T371NaCtaAt22B.1.1.280.000622
ORF1ab/nsp2371T371IaCtaTt22B.1.1600.000062
ORF1ab/nsp2371T371TacTacC22B.1.1600.000062
ORF1ab/nsp2371T371TacTacG22B.1.177.630.005405
ORF1ab/nsp2371T371TacTacC22B.1.3510.000059
ORF1ab/nsp2371T371IaCtaTt22B.1.3670.001585
ORF1ab/nsp2371T371delACT---22B.1.4240.016129
ORF1ab/nsp2371T371TacTacC22B.1.4270.000101
ORF1ab/nsp2371T371TacTacA12B.1.5260.000024
ORF1ab/nsp2371T371TacTacC12B.1.5260.000024
ORF1ab/nsp2371T371TacTacC12B.1.617.10.000129
ORF1ab/nsp2371T371TacTacA12B.1.617.10.000129
ORF1ab/nsp2371T371PActCct22B.1.617.20.000008
ORF1ab/nsp2371T371SActTct22B.1.617.20.000008
ORF1ab/nsp2371T371delACT---22N.60.014184
ORF1ab/nsp2371T371SActTct22P.10.000032
ORF1ab/nsp2371T371AActGct22P.10.000032
ORF1ab/nsp2371T371TacTacG12P.10.000016
ORF1ab/nsp2371T371TacTacA12P.10.000016
ORF1ab/nsp2371T371TacTacA22P.1.120.000968
ORF1ab/nsp2371T371TacTacC11A0.000387
ORF1ab/nsp2371T371AActGct11A.210.00277
ORF1ab/nsp2371T371del2aCTa--11All0
ORF1ab/nsp2371T371RACTCGA11All0
ORF1ab/nsp2371T371PActCct11AY.1030.000006
ORF1ab/nsp2371T371delACT---11AY.1110.000183
ORF1ab/nsp2371T371del1acTac-11AY.1130.000142
ORF1ab/nsp2371T371AActGct11AY.1160.000287
ORF1ab/nsp2371T371AActGct11AY.1170.000085
ORF1ab/nsp2371T371TacTacC11AY.1180.000063
ORF1ab/nsp2371T371AActGct11AY.1190.000035
ORF1ab/nsp2371T371IaCtaTt11AY.1190.000035
ORF1ab/nsp2371T371TacTacC11AY.1200.000037
ORF1ab/nsp2371T371NaCtaAt11AY.1200.000037
ORF1ab/nsp2371T371NaCtaAt11AY.1210.000135
ORF1ab/nsp2371T371AActGct11AY.250.000006
ORF1ab/nsp2371T371PActCct11AY.250.000006
ORF1ab/nsp2371T371delACT---11AY.250.000006
ORF1ab/nsp2371T371NaCtaAt11AY.250.000006
ORF1ab/nsp2371T371TacTacC11AY.260.000028
ORF1ab/nsp2371T371IaCtaTt11AY.260.000028
ORF1ab/nsp2371T371IaCtaTt11AY.300.000396
ORF1ab/nsp2371T371IaCtaTt11AY.320.000532
ORF1ab/nsp2371T371IaCtaTt11AY.34.10.00051
ORF1ab/nsp2371T371AActGct11AY.34.10.00051
ORF1ab/nsp2371T371TacTacC11AY.360.000148
ORF1ab/nsp2371T371AActGct11AY.40.000002
ORF1ab/nsp2371T371IaCtaTt11AY.4.50.000107
ORF1ab/nsp2371T371IaCtaTt11AY.420.00004
ORF1ab/nsp2371T371delACT---11AY.430.000004
ORF1ab/nsp2371T371TacTacC11AY.430.000004
ORF1ab/nsp2371T371NaCtaAt11AY.450.000122
ORF1ab/nsp2371T371AActGct11AY.470.000031
ORF1ab/nsp2371T371SActTct11AY.470.000031
ORF1ab/nsp2371T371NaCtaAt11AY.50.000021
ORF1ab/nsp2371T371TacTacC11AY.50.000021
ORF1ab/nsp2371T371IaCtaTt11AY.50.000021
ORF1ab/nsp2371T371AActGct11AY.5.40.000277
ORF1ab/nsp2371T371TacTacC11AY.520.000814
ORF1ab/nsp2371T371TacTacC11AY.560.001605
ORF1ab/nsp2371T371AActGct11AY.60.000041
ORF1ab/nsp2371T371TacTacC11AY.620.000436
ORF1ab/nsp2371T371delACT---11AY.660.00107
ORF1ab/nsp2371T371NaCtaAt11AY.7.10.000113
ORF1ab/nsp2371T371IaCtaTt11AY.710.000475
ORF1ab/nsp2371T371IaCtaTt11AY.730.000665
ORF1ab/nsp2371T371IaCtaTt11AY.750.000056
ORF1ab/nsp2371T371IaCtaTt11AY.75.10.00018
ORF1ab/nsp2371T371NaCtaAt11AY.920.000287
ORF1ab/nsp2371T371NaCtaAt11AY.980.000079
ORF1ab/nsp2371T371IaCtaTt11AY.98.10.000048
ORF1ab/nsp2371T371IaCtaTt11AZ.30.00152
ORF1ab/nsp2371T371TacTacC11B0.000128
ORF1ab/nsp2371T371SActTct11B.10.000009
ORF1ab/nsp2371T371IaCtaTt11B.1.1.2140.000055
ORF1ab/nsp2371T371AActGct11B.1.1.2140.000055
ORF1ab/nsp2371T371IaCtaTt11B.1.1.2710.055556
ORF1ab/nsp2371T371IaCtaTt11B.1.1.2880.001916
ORF1ab/nsp2371T371IaCtaTt11B.1.1.3060.000438
ORF1ab/nsp2371T371AActGct11B.1.1.3180.000302
ORF1ab/nsp2371T371AActGct11B.1.1.3510.002793
ORF1ab/nsp2371T371delACT---11B.1.1.4160.000905
ORF1ab/nsp2371T371IaCtaTt11B.1.1.470.005348
ORF1ab/nsp2371T371IaCtaTt11B.1.1.500.000679
ORF1ab/nsp2371T371PActCct11B.1.1.70.000001
ORF1ab/nsp2371T371IaCtaTt11B.1.1280.000635
ORF1ab/nsp2371T371IaCtaTt11B.1.160.110.005714
ORF1ab/nsp2371T371delACT---11B.1.160.70.002079
ORF1ab/nsp2371T371TacTacG11B.1.1770.000013
ORF1ab/nsp2371T371AActGct11B.1.1770.000013
ORF1ab/nsp2371T371IaCtaTt11B.1.177.120.000152
ORF1ab/nsp2371T371IaCtaTt11B.1.177.40.000211
ORF1ab/nsp2371T371delACT---11B.1.177.540.000606
ORF1ab/nsp2371T371IaCtaTt11B.1.177.750.001041
ORF1ab/nsp2371T371TacTacC11B.1.177.770.000726
ORF1ab/nsp2371T371NaCtaAt11B.1.20.000009
ORF1ab/nsp2371T371TacTacC11B.1.2430.00007
ORF1ab/nsp2371T371TacTacC11B.1.2580.000067
ORF1ab/nsp2371T371delACT---11B.1.258.160.001637
ORF1ab/nsp2371T371del2aCTa--11B.1.3110.000275
ORF1ab/nsp2371T371IaCtaTt11B.1.3400.004292
ORF1ab/nsp2371T371IaCtaTt11B.1.3460.001311
ORF1ab/nsp2371T371RACTCGA11B.1.3510.00003
ORF1ab/nsp2371T371IaCtaTt11B.1.3510.00003
ORF1ab/nsp2371T371IaCtaTt11B.1.360.000146
ORF1ab/nsp2371T371SActTct11B.1.3690.000285
ORF1ab/nsp2371T371delACT---11B.1.4290.000024
ORF1ab/nsp2371T371TacTacC11B.1.438.10.000107
ORF1ab/nsp2371T371delACT---11B.1.4390.005917
ORF1ab/nsp2371T371NaCtaAt11B.1.4620.007246
ORF1ab/nsp2371T371SActTct11B.1.5030.002488
ORF1ab/nsp2371T371IaCtaTt11B.1.5250.000113
ORF1ab/nsp2371T371IaCtaTt11B.1.5320.006211
ORF1ab/nsp2371T371delACT---11B.1.5610.000397
ORF1ab/nsp2371T371del1acTac-11B.1.5760.000907
ORF1ab/nsp2371T371AActGct11B.1.5760.000907
ORF1ab/nsp2371T371NaCtaAt11B.1.5800.004065
ORF1ab/nsp2371T371TacTacA11B.1.5820.000491
ORF1ab/nsp2371T371TacTacC11B.1.5950.000261
ORF1ab/nsp2371T371IaCtaTt11B.1.5960.000087
ORF1ab/nsp2371T371IaCtaTt11B.1.6200.000946
ORF1ab/nsp2371T371IaCtaTt11B.1.6210.000089
ORF1ab/nsp2371T371delACT---11B.570.015152
ORF1ab/nsp2371T371IaCtaTt11C.170.055556
ORF1ab/nsp2371T371AActGct11C.360.000911
ORF1ab/nsp2371T371AActGct11C.370.000116
ORF1ab/nsp2371T371delACT---11P.10.000016
ORF1ab/nsp2371T371IaCtaTt11P.1.10.000318
ORF1ab/nsp2371T371AActGct11P.1.120.000484
ORF1ab/nsp2371T371TacTacG11P.1.140.000048
ORF1ab/nsp2371T371AActGct11P.1.150.000232
ORF1ab/nsp2371T371delACT---11Q.10.000126
ORF1ab/nsp2371T371TacTacC11Q.30.000145
ORF1ab/nsp2371T371IaCtaTt11Q.30.000145
ORF1ab/nsp2371T371IaCtaTt11Q.40.000455
ORF1ab/nsp2371T371TacTacC11Q.80.000165
ORF1ab/nsp2371T371delACT---11Q.80.000165