CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 371 | T371I | T551I | nonsyn | aCt | aTt | 2002 | 2001 | 0.999501 | 1916-1918 |
ORF1ab/nsp2 | 371 | T371I | T551I | nonsyn | aCT | aTC | 2002 | 1 | 0.0004995 | 1916-1918 |
ORF1ab/nsp2 | 371 | T371T | T551T | syn | acT | acC | 655 | 586 | 0.894656 | 1916-1918 |
ORF1ab/nsp2 | 371 | T371T | T551T | syn | acT | acG | 655 | 43 | 0.0656489 | 1916-1918 |
ORF1ab/nsp2 | 371 | T371T | T551T | syn | acT | acA | 655 | 26 | 0.0396947 | 1916-1918 |
ORF1ab/nsp2 | 371 | T371N | T551N | nonsyn | aCt | aAt | 163 | 163 | 1 | 1916-1918 |
ORF1ab/nsp2 | 371 | T371A | T551A | nonsyn | Act | Gct | 143 | 143 | 1 | 1916-1918 |
ORF1ab/nsp2 | 371 | T371S | T551S | nonsyn | Act | Tct | 105 | 100 | 0.952381 | 1916-1918 |
ORF1ab/nsp2 | 371 | T371S | T551S | nonsyn | aCt | aGt | 105 | 5 | 0.047619 | 1916-1918 |
ORF1ab/nsp2 | 371 | T371del | T551del | del | ACT | --- | 50 | 50 | 1 | 1916-1918 |
ORF1ab/nsp2 | 371 | T371P | T551P | nonsyn | Act | Cct | 8 | 8 | 1 | 1916-1918 |
ORF1ab/nsp2 | 371 | T371del1 | T551del1 | del | acT | ac- | 2 | 2 | 1 | 1916-1918 |
ORF1ab/nsp2 | 371 | T371del2 | T551del2 | del | aCT | a-- | 1 | 1 | 1 | 1916-1918 |
ORF1ab/nsp2 | 371 | T371R | T551R | nonsyn | ACT | CGA | 1 | 1 | 1 | 1916-1918 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 2001 | 2002 | All | 0.000383 |
ORF1ab/nsp2 | 371 | T371I | aCT | aTC | 1 | 2002 | All | 0 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 795 | 795 | B.1.1.7 | 0.000712 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 586 | 655 | All | 0.000112 |
ORF1ab/nsp2 | 371 | T371T | acT | acG | 43 | 655 | All | 0.000008 |
ORF1ab/nsp2 | 371 | T371T | acT | acA | 26 | 655 | All | 0.000005 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 321 | 321 | AY.54 | 0.030606 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 286 | 286 | B.1.332 | 1 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 252 | 263 | B.1.1.7 | 0.000226 |
ORF1ab/nsp2 | 371 | T371T | acT | acA | 8 | 263 | B.1.1.7 | 0.000007 |
ORF1ab/nsp2 | 371 | T371T | acT | acG | 3 | 263 | B.1.1.7 | 0.000003 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 168 | 168 | B.1.439 | 0.994083 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 163 | 163 | All | 0.000031 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 143 | 143 | All | 0.000027 |
ORF1ab/nsp2 | 371 | T371S | Act | Tct | 100 | 105 | All | 0.000019 |
ORF1ab/nsp2 | 371 | T371S | aCt | aGt | 5 | 105 | All | 0.000001 |
ORF1ab/nsp2 | 371 | T371S | Act | Tct | 91 | 91 | AY.44 | 0.000554 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 77 | 77 | B.1.369 | 0.021962 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 75 | 75 | B.1.617.2 | 0.000282 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 65 | 65 | B.1 | 0.000595 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 50 | 50 | All | 0.00001 |
ORF1ab/nsp2 | 371 | T371T | acT | acG | 30 | 47 | AY.4 | 0.000047 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 17 | 47 | AY.4 | 0.000026 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 44 | 44 | B.1.177 | 0.000579 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 40 | 40 | B.1.575 | 0.012136 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 35 | 35 | AY.4 | 0.000054 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 31 | 31 | B.1.1.294 | 0.039241 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 29 | 29 | C.36.2 | 1 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 28 | 28 | B.1.617.2 | 0.000105 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 27 | 27 | AY.103 | 0.000168 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 23 | 23 | AY.39.1 | 0.000911 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 21 | 21 | AY.4 | 0.000033 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 20 | 20 | P.1.8 | 0.095694 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 19 | 19 | B.1.22 | 0.025033 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 17 | 18 | B.1.617.2 | 0.000064 |
ORF1ab/nsp2 | 371 | T371T | acT | acA | 1 | 18 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 18 | 18 | Q.8 | 0.002968 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 16 | 17 | B.1.2 | 0.000141 |
ORF1ab/nsp2 | 371 | T371I | aCT | aTC | 1 | 17 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 12 | 15 | AY.44 | 0.000073 |
ORF1ab/nsp2 | 371 | T371T | acT | acA | 2 | 15 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 371 | T371T | acT | acG | 1 | 15 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 14 | 14 | AY.26 | 0.000396 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 14 | 14 | AY.43 | 0.000062 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 14 | 14 | B.1.1.7 | 0.000013 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 14 | 14 | B.1.258 | 0.000932 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 13 | 13 | B.1.177.60 | 0.00284 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 13 | 13 | P.1 | 0.000205 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 12 | 12 | AY.39 | 0.000297 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 12 | 12 | C.37 | 0.001393 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 10 | 10 | AY.3 | 0.000099 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 10 | 10 | AY.9 | 0.000676 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 10 | 10 | B.1.1 | 0.000181 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 10 | 10 | B.1.1.512 | 0.285714 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp2 | 371 | T371P | Act | Cct | 8 | 8 | All | 0.000002 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 8 | 8 | AY.44 | 0.000049 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 8 | 8 | AY.61 | 0.000838 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 8 | 8 | P.1.14 | 0.000382 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 7 | 7 | AY.102 | 0.000186 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 7 | 7 | B.1.258.17 | 0.000728 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 6 | 6 | AY.113 | 0.000854 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 5 | 6 | B.1 | 0.000046 |
ORF1ab/nsp2 | 371 | T371T | acT | acA | 1 | 6 | B.1 | 0.000009 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 6 | 6 | Q.1 | 0.000758 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 5 | 5 | AY.113 | 0.000712 |
ORF1ab/nsp2 | 371 | T371T | acT | acG | 3 | 5 | AY.25 | 0.000018 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 2 | 5 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 371 | T371T | acT | acA | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 5 | 5 | AY.7.1 | 0.000564 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 4 | 4 | AY.24 | 0.001724 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 4 | 4 | AY.46.5 | 0.000794 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 4 | 4 | AY.57 | 0.002625 |
ORF1ab/nsp2 | 371 | T371S | aCt | aGt | 4 | 4 | AY.63 | 0.001547 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 4 | 4 | B.1.1.1 | 0.001307 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 4 | 4 | B.1.221.2 | 0.016064 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 2 | 3 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 371 | T371T | acT | acA | 1 | 3 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 3 | 3 | AY.113 | 0.000427 |
ORF1ab/nsp2 | 371 | T371T | acT | acA | 2 | 3 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 1 | 3 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 2 | 3 | AY.39 | 0.000049 |
ORF1ab/nsp2 | 371 | T371T | acT | acG | 1 | 3 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp2 | 371 | T371P | Act | Cct | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 3 | 3 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 3 | 3 | B.1.426 | 0.003027 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp2 | 371 | T371del1 | acT | ac- | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 2 | 2 | AY.2 | 0.000712 |
ORF1ab/nsp2 | 371 | T371S | Act | Tct | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 371 | T371S | aCt | aGt | 1 | 2 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 2 | 2 | B.1.1.190 | 0.1 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp2 | 371 | T371T | acT | acG | 2 | 2 | B.1.177.63 | 0.005405 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 2 | 2 | B.1.367 | 0.001585 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp2 | 371 | T371T | acT | acA | 1 | 2 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 1 | 2 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 1 | 2 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 371 | T371T | acT | acA | 1 | 2 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 371 | T371P | Act | Cct | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 371 | T371S | Act | Tct | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 371 | T371S | Act | Tct | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 371 | T371T | acT | acG | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp2 | 371 | T371T | acT | acA | 1 | 2 | P.1 | 0.000016 |
ORF1ab/nsp2 | 371 | T371T | acT | acA | 2 | 2 | P.1.12 | 0.000968 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp2 | 371 | T371del2 | aCT | a-- | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 371 | T371R | ACT | CGA | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 371 | T371P | Act | Cct | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 371 | T371del1 | acT | ac- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 371 | T371P | Act | Cct | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 371 | T371S | Act | Tct | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | AZ.3 | 0.00152 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 371 | T371S | Act | Tct | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | B.1.1.271 | 0.055556 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | B.1.1.288 | 0.001916 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp2 | 371 | T371P | Act | Cct | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | B.1.160.11 | 0.005714 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp2 | 371 | T371T | acT | acG | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp2 | 371 | T371del2 | aCT | a-- | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp2 | 371 | T371R | ACT | CGA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 371 | T371S | Act | Tct | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp2 | 371 | T371S | Act | Tct | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | B.1.532 | 0.006211 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 371 | T371del1 | acT | ac- | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp2 | 371 | T371N | aCt | aAt | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp2 | 371 | T371T | acT | acA | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 371 | T371T | acT | acG | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 371 | T371A | Act | Gct | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp2 | 371 | T371I | aCt | aTt | 1 | 1 | Q.4 | 0.000455 |
ORF1ab/nsp2 | 371 | T371T | acT | acC | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 371 | T371del | ACT | --- | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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