CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 370 | R370C | R550C | nonsyn | Cgc | Tgc | 3759 | 3759 | 1 | 1913-1915 |
ORF1ab/nsp2 | 370 | R370H | R550H | nonsyn | cGc | cAc | 1707 | 1707 | 1 | 1913-1915 |
ORF1ab/nsp2 | 370 | R370R | R550R | syn | cgC | cgT | 1312 | 1087 | 0.828506 | 1913-1915 |
ORF1ab/nsp2 | 370 | R370R | R550R | syn | cgC | cgA | 1312 | 221 | 0.168445 | 1913-1915 |
ORF1ab/nsp2 | 370 | R370R | R550R | syn | cgC | cgG | 1312 | 4 | 0.00304878 | 1913-1915 |
ORF1ab/nsp2 | 370 | R370S | R550S | nonsyn | Cgc | Agc | 551 | 549 | 0.99637 | 1913-1915 |
ORF1ab/nsp2 | 370 | R370S | R550S | nonsyn | CGc | TCc | 551 | 1 | 0.00181488 | 1913-1915 |
ORF1ab/nsp2 | 370 | R370S | R550S | nonsyn | CgC | AgT | 551 | 1 | 0.00181488 | 1913-1915 |
ORF1ab/nsp2 | 370 | R370del | R550del | del | CGC | --- | 51 | 51 | 1 | 1913-1915 |
ORF1ab/nsp2 | 370 | R370L | R550L | nonsyn | cGc | cTc | 20 | 18 | 0.9 | 1913-1915 |
ORF1ab/nsp2 | 370 | R370L | R550L | nonsyn | cGC | cTT | 20 | 1 | 0.05 | 1913-1915 |
ORF1ab/nsp2 | 370 | R370L | R550L | nonsyn | CGC | TTA | 20 | 1 | 0.05 | 1913-1915 |
ORF1ab/nsp2 | 370 | R370G | R550G | nonsyn | Cgc | Ggc | 7 | 7 | 1 | 1913-1915 |
ORF1ab/nsp2 | 370 | R370P | R550P | nonsyn | cGc | cCc | 3 | 3 | 1 | 1913-1915 |
ORF1ab/nsp2 | 370 | R370del2 | R550del2 | del | CGc | --c | 1 | 1 | 1 | 1913-1915 |
ORF1ab/nsp2 | 370 | R370del1 | R550del1 | del | cGc | c-c | 1 | 1 | 1 | 1913-1915 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3759 | 3759 | All | 0.000719 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1935 | 1935 | B.1.279 | 0.993837 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1707 | 1707 | All | 0.000326 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1087 | 1312 | All | 0.000208 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgA | 221 | 1312 | All | 0.000042 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgG | 4 | 1312 | All | 0.000001 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 549 | 551 | All | 0.000105 |
ORF1ab/nsp2 | 370 | R370S | CGc | TCc | 1 | 551 | All | 0 |
ORF1ab/nsp2 | 370 | R370S | CgC | AgT | 1 | 551 | All | 0 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 359 | 359 | B.1.1.7 | 0.000321 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 335 | 335 | AY.4 | 0.000521 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgA | 188 | 269 | B.1.1.7 | 0.000168 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 79 | 269 | B.1.1.7 | 0.000071 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgG | 2 | 269 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 262 | 262 | B.1.1.7 | 0.000235 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 211 | 211 | AY.4 | 0.000328 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 174 | 174 | AY.4 | 0.000271 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 174 | 174 | B.1.626 | 0.994286 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 167 | 167 | AY.4.5 | 0.017951 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 152 | 152 | B.1.2 | 0.001338 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 135 | 135 | AY.4 | 0.00021 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 135 | 135 | B.1.617.2 | 0.000508 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 134 | 134 | AY.25 | 0.000806 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 110 | 110 | B.1.1.7 | 0.000098 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 101 | 101 | P.1 | 0.001591 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 88 | 88 | B.1.617.2 | 0.000331 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 84 | 84 | P.1 | 0.001323 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 67 | 67 | AY.103 | 0.000416 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 65 | 65 | B.1 | 0.000595 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 62 | 62 | AY.43 | 0.000275 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 60 | 60 | AY.44 | 0.000365 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 57 | 57 | AY.43 | 0.000253 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 51 | 51 | All | 0.00001 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 50 | 50 | AY.3 | 0.000497 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 45 | 45 | AY.103 | 0.000279 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 45 | 45 | B.1.2 | 0.000396 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 37 | 45 | B.1.2 | 0.000326 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgA | 8 | 45 | B.1.2 | 0.00007 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 44 | 44 | AY.103 | 0.000273 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 39 | 39 | AY.3 | 0.000388 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 39 | 39 | B.1.525 | 0.004413 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 35 | 39 | B.1.617.2 | 0.000132 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgA | 4 | 39 | B.1.617.2 | 0.000015 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 35 | 37 | AY.44 | 0.000213 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgA | 2 | 37 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 35 | 35 | AY.5 | 0.000723 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 33 | 33 | B.1.438.1 | 0.00354 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 31 | 31 | AY.7.1 | 0.003494 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 31 | 31 | B.1 | 0.000284 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 31 | 31 | B.1.221 | 0.002202 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 31 | 31 | B.1.429 | 0.000729 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 30 | 30 | AY.25 | 0.00018 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 30 | 30 | AY.4.2 | 0.000651 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 30 | 30 | C.36.3.1 | 0.081522 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 26 | 27 | AY.43 | 0.000115 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgA | 1 | 27 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 27 | 27 | AY.44 | 0.000164 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 27 | 27 | B.1.526 | 0.000635 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 26 | 26 | B.1.1.372 | 0.017906 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 25 | 25 | AY.12 | 0.007901 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 24 | 24 | AY.39 | 0.000593 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 24 | 24 | B.1.429 | 0.000565 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 24 | 24 | B.1.526 | 0.000564 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 21 | 21 | P.1 | 0.000331 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 21 | 21 | Q.3 | 0.003046 |
ORF1ab/nsp2 | 370 | R370L | cGc | cTc | 18 | 20 | All | 0.000003 |
ORF1ab/nsp2 | 370 | R370L | cGC | cTT | 1 | 20 | All | 0 |
ORF1ab/nsp2 | 370 | R370L | CGC | TTA | 1 | 20 | All | 0 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 20 | 20 | AY.99.2 | 0.001843 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 20 | 20 | B.1.1 | 0.000363 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 19 | 19 | AY.42 | 0.000764 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 19 | 19 | B.1.177 | 0.00025 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 19 | 19 | B.1.36.9 | 0.061093 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 18 | 18 | AY.88 | 0.015915 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 18 | 18 | C.16 | 0.019088 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 17 | 17 | AY.103 | 0.000106 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 17 | 17 | AY.4.2 | 0.000369 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 17 | 17 | B.1.177 | 0.000224 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 17 | 17 | B.1.258 | 0.001131 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 16 | 16 | B.1.568 | 0.017778 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 15 | 15 | AY.102 | 0.000398 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 15 | 15 | AY.95 | 0.011416 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 14 | 14 | AY.26 | 0.000396 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 14 | 14 | B.1.1.519 | 0.000556 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 14 | 14 | B.1.177.7 | 0.002308 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 13 | 13 | AY.25 | 0.000078 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 13 | 13 | AY.5 | 0.000268 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 13 | 13 | P.7 | 0.056769 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 12 | 12 | B.1.609 | 0.005753 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 11 | 11 | AY.120 | 0.000409 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 11 | 11 | AY.26 | 0.000311 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 11 | 11 | AY.3 | 0.000109 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 11 | 11 | AY.33 | 0.000735 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 11 | 11 | AY.5 | 0.000227 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 11 | 11 | B | 0.001406 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 11 | 11 | B.1.526 | 0.000259 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 10 | 10 | AY.102 | 0.000265 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 9 | 10 | AY.25 | 0.000054 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgG | 1 | 10 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 10 | 10 | AY.98.1 | 0.000484 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 9 | 10 | B.1 | 0.000082 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgA | 1 | 10 | B.1 | 0.000009 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 10 | 10 | B.1.1.222 | 0.00204 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 10 | 10 | B.1.1.337 | 0.035971 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 9 | 9 | AY.29 | 0.000142 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 9 | 9 | B.1.160 | 0.000281 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 9 | 9 | B.1.177.10 | 0.007902 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 9 | 9 | B.1.177.86 | 0.001651 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 9 | 9 | B.1.621 | 0.000797 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 8 | 8 | AY.119 | 0.000282 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 8 | 8 | AY.29 | 0.000126 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 8 | 8 | AY.6 | 0.000329 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 8 | 8 | B.1.351 | 0.000238 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 8 | 8 | B.1.36.29 | 0.004139 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 8 | 8 | B.1.399 | 0.015474 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 8 | 8 | B.1.621 | 0.000708 |
ORF1ab/nsp2 | 370 | R370G | Cgc | Ggc | 7 | 7 | All | 0.000001 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 7 | 7 | AY.84 | 0.003062 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 7 | 7 | AY.9.2 | 0.000257 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 7 | 7 | B.1.241 | 0.005682 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 7 | 7 | B.1.637 | 0.000512 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 7 | 7 | P.1 | 0.00011 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 6 | 6 | AY.23 | 0.000418 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 6 | 6 | AY.3.1 | 0.000512 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 6 | 6 | AY.5.3 | 0.002024 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 6 | 6 | B.1.1 | 0.000109 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 4 | 6 | B.1.1.519 | 0.000159 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgA | 2 | 6 | B.1.1.519 | 0.000079 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 6 | 6 | B.1.160 | 0.000187 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 6 | 6 | B.1.631 | 0.020202 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 5 | 5 | AE.8 | 0.002445 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 5 | 5 | AY.14 | 0.00044 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 5 | 5 | B.1.160.26 | 0.012107 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 5 | 5 | B.1.36 | 0.00073 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 5 | 5 | B.1.627 | 0.010101 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 4 | 4 | AY.19 | 0.004561 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 3 | 4 | AY.39 | 0.000074 |
ORF1ab/nsp2 | 370 | R370S | CGc | TCc | 1 | 4 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 4 | 4 | B.1.1.176 | 0.001757 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 4 | 4 | B.1.1.316 | 0.0037 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 4 | 4 | B.1.1.70 | 0.001364 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 4 | 4 | B.1.177.8 | 0.00301 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 4 | 4 | B.1.258.17 | 0.000416 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 4 | 4 | B.1.427 | 0.000202 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 2 | 4 | B.1.596 | 0.000174 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgA | 2 | 4 | B.1.596 | 0.000174 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 4 | 4 | B.1.637 | 0.000292 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 4 | 4 | Q.1 | 0.000505 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 3 | 3 | A | 0.001161 |
ORF1ab/nsp2 | 370 | R370P | cGc | cCc | 3 | 3 | All | 0.000001 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 3 | 3 | AY.12 | 0.000948 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgA | 3 | 3 | AY.14 | 0.000264 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp2 | 370 | R370G | Cgc | Ggc | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | AY.64 | 0.001786 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 3 | 3 | AY.7.1 | 0.000338 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | AY.70 | 0.000626 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 3 | 3 | B.1.1.216 | 0.002671 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | B.1.1.294 | 0.003797 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 3 | 3 | B.1.1.306 | 0.001315 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 3 | 3 | B.1.1.397 | 0.006757 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 3 | 3 | B.1.177.41 | 0.0075 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 3 | 3 | B.1.177.45 | 0.001144 |
ORF1ab/nsp2 | 370 | R370L | cGc | cTc | 2 | 3 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 370 | R370L | cGC | cTT | 1 | 3 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 3 | 3 | B.1.575 | 0.00091 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | C.37 | 0.000348 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 3 | 3 | L.3 | 0.010638 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 3 | 3 | N.5 | 0.0053 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 2 | 2 | AY.11 | 0.002677 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 2 | 2 | AY.121 | 0.000271 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 2 | AY.72 | 0.001361 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgG | 1 | 2 | AY.72 | 0.001361 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp2 | 370 | R370L | cGc | cTc | 2 | 2 | AY.78 | 0.003082 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | AY.9.2 | 0.000073 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp2 | 370 | R370L | cGc | cTc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 2 | 2 | B.1.1.398 | 0.006452 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.1.1.419 | 0.014815 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.1.1.486 | 0.003155 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.1.149 | 0.006849 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.1.177.32 | 0.002699 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 2 | 2 | B.1.258 | 0.000133 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 2 | 2 | B.1.36.17 | 0.000988 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 2 | 2 | B.1.362 | 0.003082 |
ORF1ab/nsp2 | 370 | R370L | cGc | cTc | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 2 | 2 | B.1.509 | 0.001732 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgA | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 2 | 2 | B.1.603 | 0.021277 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 2 | 2 | B.1.637 | 0.000146 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 2 | 2 | B.39 | 0.004662 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 2 | 2 | B.6.3 | 0.052632 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 2 | 2 | B.6.6 | 0.001778 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp2 | 370 | R370L | cGc | cTc | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgA | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp2 | 370 | R370del1 | cGc | c-c | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 370 | R370del2 | CGc | --c | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgA | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 370 | R370L | cGc | cTc | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp2 | 370 | R370P | cGc | cCc | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 370 | R370L | cGc | cTc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 370 | R370P | cGc | cCc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 370 | R370L | cGc | cTc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 370 | R370L | cGc | cTc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgA | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 370 | R370L | cGc | cTc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgA | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgA | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 370 | R370del1 | cGc | c-c | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 370 | R370P | cGc | cCc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | B.1.1.237 | 0.005405 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.1.263 | 0.001558 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.1.329 | 0.003846 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp2 | 370 | R370L | cGc | cTc | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.1.435 | 0.034483 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.1.464 | 0.001473 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.1.524 | 0.020833 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp2 | 370 | R370del2 | CGc | --c | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 370 | R370G | Cgc | Ggc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.1.74 | 0.00431 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgA | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.112 | 0.005181 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.160.32 | 0.004292 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp2 | 370 | R370G | Cgc | Ggc | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.177.50 | 0.004695 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | B.1.177.53 | 0.002392 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.177.80 | 0.001912 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp2 | 370 | R370G | Cgc | Ggc | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | B.1.221.4 | 0.004167 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.227 | 0.047619 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.235 | 0.002519 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.258.14 | 0.00098 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 370 | R370S | CgC | AgT | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.3 | 0.002618 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgA | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.397 | 0.004854 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.413 | 0.004255 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | B.1.446 | 0.02 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.520 | 0.021739 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.538 | 0.008065 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.540 | 0.009709 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.541 | 0.004425 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.549 | 0.007194 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.551 | 0.00129 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.564.1 | 0.001577 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | B.1.566 | 0.019231 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 370 | R370L | cGc | cTc | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 370 | R370L | CGC | TTA | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 370 | R370G | Cgc | Ggc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.28 | 0.003279 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.37 | 0.028571 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | B.4.1 | 0.018868 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp2 | 370 | R370L | cGc | cTc | 1 | 1 | B.6 | 0.00091 |
ORF1ab/nsp2 | 370 | R370S | Cgc | Agc | 1 | 1 | B.60 | 0.015873 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | D.5 | 0.004975 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | P.1.10.1 | 0.00813 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | P.1.8 | 0.004785 |
ORF1ab/nsp2 | 370 | R370R | cgC | cgT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 370 | R370H | cGc | cAc | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp2 | 370 | R370del | CGC | --- | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 370 | R370C | Cgc | Tgc | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|