CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 369 | S369S | S549S | syn | tcC | tcT | 29792 | 29513 | 0.990635 | 1910-1912 |
ORF1ab/nsp2 | 369 | S369S | S549S | syn | tcC | tcA | 29792 | 259 | 0.00869361 | 1910-1912 |
ORF1ab/nsp2 | 369 | S369S | S549S | syn | tcC | tcG | 29792 | 19 | 0.000637755 | 1910-1912 |
ORF1ab/nsp2 | 369 | S369S | S549S | syn | TCC | AGT | 29792 | 1 | 0.0000335661 | 1910-1912 |
ORF1ab/nsp2 | 369 | S369F | S549F | nonsyn | tCc | tTc | 2753 | 2741 | 0.995641 | 1910-1912 |
ORF1ab/nsp2 | 369 | S369F | S549F | nonsyn | tCC | tTT | 2753 | 12 | 0.00435888 | 1910-1912 |
ORF1ab/nsp2 | 369 | S369T | S549T | nonsyn | Tcc | Acc | 1252 | 1251 | 0.999201 | 1910-1912 |
ORF1ab/nsp2 | 369 | S369T | S549T | nonsyn | TcC | AcT | 1252 | 1 | 0.000798722 | 1910-1912 |
ORF1ab/nsp2 | 369 | S369A | S549A | nonsyn | Tcc | Gcc | 57 | 57 | 1 | 1910-1912 |
ORF1ab/nsp2 | 369 | S369del | S549del | del | TCC | --- | 48 | 48 | 1 | 1910-1912 |
ORF1ab/nsp2 | 369 | S369Y | S549Y | nonsyn | tCc | tAc | 32 | 32 | 1 | 1910-1912 |
ORF1ab/nsp2 | 369 | S369del1 | S549del1 | del | tCc | t-c | 11 | 7 | 0.636364 | 1910-1912 |
ORF1ab/nsp2 | 369 | S369del1 | S549del1 | del | Tcc | -cc | 11 | 3 | 0.272727 | 1910-1912 |
ORF1ab/nsp2 | 369 | S369del1 | S549del1 | del | tcC | tc- | 11 | 1 | 0.0909091 | 1910-1912 |
ORF1ab/nsp2 | 369 | S369C | S549C | nonsyn | tCc | tGc | 10 | 10 | 1 | 1910-1912 |
ORF1ab/nsp2 | 369 | S369P | S549P | nonsyn | Tcc | Ccc | 7 | 7 | 1 | 1910-1912 |
ORF1ab/nsp2 | 369 | S369L | S549L | nonsyn | TCc | CTc | 4 | 4 | 1 | 1910-1912 |
ORF1ab/nsp2 | 369 | S369del2 | S549del2 | del | tCC | t-- | 3 | 2 | 0.666667 | 1910-1912 |
ORF1ab/nsp2 | 369 | S369del2 | S549del2 | del | TCc | --c | 3 | 1 | 0.333333 | 1910-1912 |
ORF1ab/nsp2 | 369 | S369V | S549V | nonsyn | TCc | GTc | 1 | 1 | 1 | 1910-1912 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 29513 | 29792 | All | 0.005645 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 259 | 29792 | All | 0.00005 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcG | 19 | 29792 | All | 0.000004 |
ORF1ab/nsp2 | 369 | S369S | TCC | AGT | 1 | 29792 | All | 0 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3530 | 3530 | B.1.429 | 0.083057 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3057 | 3099 | B.1.1.7 | 0.002737 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 31 | 3099 | B.1.1.7 | 0.000028 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcG | 11 | 3099 | B.1.1.7 | 0.00001 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2996 | 2996 | P.1.7 | 0.956577 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2741 | 2753 | All | 0.000524 |
ORF1ab/nsp2 | 369 | S369F | tCC | tTT | 12 | 2753 | All | 0.000002 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2143 | 2143 | AY.44 | 0.013044 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1797 | 1805 | AY.4 | 0.002797 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 8 | 1805 | AY.4 | 0.000012 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1369 | 1400 | B.1.617.2 | 0.005155 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 31 | 1400 | B.1.617.2 | 0.000117 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 1251 | 1252 | All | 0.000239 |
ORF1ab/nsp2 | 369 | S369T | TcC | AcT | 1 | 1252 | All | 0 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 1152 | 1152 | AY.4 | 0.001793 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1092 | 1092 | P.1.13 | 0.981132 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 900 | 900 | B.1.1.153 | 0.985761 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 896 | 896 | AY.5 | 0.018502 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 846 | 846 | P.1.2 | 0.978035 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 638 | 638 | B.1.2 | 0.005618 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 488 | 569 | AY.43 | 0.002162 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 80 | 569 | AY.43 | 0.000354 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcG | 1 | 569 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 558 | 563 | B.1 | 0.005111 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 5 | 563 | B.1 | 0.000046 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 560 | 560 | AY.40 | 0.540019 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 520 | 520 | AY.44 | 0.003165 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 487 | 499 | AY.25 | 0.002929 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 12 | 499 | AY.25 | 0.000072 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 491 | 491 | B.1.1.51 | 0.843643 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 477 | 477 | B.1.627 | 0.963636 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 454 | 454 | AY.119 | 0.01603 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 411 | 411 | B.1.617.2 | 0.001548 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 343 | 345 | P.1 | 0.005404 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 2 | 345 | P.1 | 0.000032 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 323 | 325 | AY.3 | 0.003213 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcG | 2 | 325 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 319 | 322 | B.1.1 | 0.005787 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 3 | 322 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 270 | 274 | AY.103 | 0.001676 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcG | 2 | 274 | AY.103 | 0.000012 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 2 | 274 | AY.103 | 0.000012 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 273 | 274 | AY.47 | 0.008492 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 1 | 274 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 264 | 264 | B.1.243 | 0.01837 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 244 | 244 | B.1.1.7 | 0.000218 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 217 | 217 | B.1.177 | 0.002857 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 188 | 188 | AY.4 | 0.000293 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 166 | 169 | AY.23 | 0.011578 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 3 | 169 | AY.23 | 0.000209 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 144 | 144 | B.1.1.519 | 0.005718 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 126 | 126 | AY.46.6 | 0.009098 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 125 | 125 | B.1.427 | 0.006312 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 122 | 122 | B.1.177.21 | 0.009329 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 120 | 120 | B.1.160 | 0.003743 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 113 | 113 | AY.100 | 0.005199 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 105 | 106 | AY.26 | 0.002973 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 1 | 106 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 97 | 97 | B.1.221 | 0.00689 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 90 | 90 | B.1.1.47 | 0.481283 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 84 | 84 | AY.102 | 0.002227 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 76 | 76 | B.1.1.318 | 0.022933 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 65 | 72 | AY.39 | 0.001606 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 7 | 72 | AY.39 | 0.000173 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 71 | 71 | AY.103 | 0.000441 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 71 | 71 | B.1.1.317 | 0.02923 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 70 | 70 | AY.119 | 0.002472 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 68 | 68 | AY.116 | 0.019501 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 68 | 68 | AY.120 | 0.002528 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 65 | 65 | B.1.177.7 | 0.010715 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 63 | 64 | B.1.351 | 0.001873 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 1 | 64 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 63 | 63 | AY.43 | 0.000279 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 56 | 61 | AY.29 | 0.000883 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 5 | 61 | AY.29 | 0.000079 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 56 | 60 | AY.118 | 0.003508 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 4 | 60 | AY.118 | 0.000251 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 60 | 60 | B.1.234 | 0.007917 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 58 | 60 | B.1.526 | 0.001363 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcG | 1 | 60 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 1 | 60 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 369 | S369A | Tcc | Gcc | 57 | 57 | All | 0.000011 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 56 | 57 | B | 0.007157 |
ORF1ab/nsp2 | 369 | S369S | TCC | AGT | 1 | 57 | B | 0.000128 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 57 | 57 | B.1.1.1 | 0.018621 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 56 | 56 | B.1.177.57 | 0.015735 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 54 | 54 | B.1.325 | 0.372414 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 53 | 53 | C.37 | 0.006151 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 49 | 49 | AY.14 | 0.004313 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 48 | 48 | All | 0.000009 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 47 | 47 | B.1.1.311 | 0.016834 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 46 | 47 | B.1.2 | 0.000405 |
ORF1ab/nsp2 | 369 | S369F | tCC | tTT | 1 | 47 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 47 | 47 | B.1.637 | 0.003434 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 46 | 46 | AY.4.2 | 0.000998 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 46 | 46 | AY.99.2 | 0.004239 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 41 | 43 | AY.6 | 0.001686 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 2 | 43 | AY.6 | 0.000082 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 39 | 42 | AY.20 | 0.001516 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 3 | 42 | AY.20 | 0.000117 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 42 | 42 | B.1.1.368 | 0.12963 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 41 | 41 | B.1.258 | 0.002728 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 40 | 40 | AY.24 | 0.017241 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 40 | 40 | AY.93 | 0.010923 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 39 | 39 | AY.42 | 0.001569 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 39 | 39 | B.1 | 0.000357 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 38 | 39 | B.1.621 | 0.003364 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 1 | 39 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 36 | 38 | AY.61 | 0.003772 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 2 | 38 | AY.61 | 0.00021 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 38 | 38 | P.1.1 | 0.012071 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 36 | 36 | AY.3 | 0.000358 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 36 | 36 | AY.85 | 0.015378 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 36 | 36 | B.1.1.28 | 0.011204 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 36 | 36 | B.1.36 | 0.005252 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 30 | 35 | B.1.177.81 | 0.00568 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 5 | 35 | B.1.177.81 | 0.000947 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 35 | 35 | P.1.14 | 0.001673 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 34 | 34 | AY.4.5 | 0.003655 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 33 | 33 | P.1.17 | 0.005338 |
ORF1ab/nsp2 | 369 | S369Y | tCc | tAc | 32 | 32 | All | 0.000006 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 32 | 32 | B.1.177.86 | 0.00587 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 32 | 32 | B.1.243 | 0.002227 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 30 | 30 | AY.121 | 0.00406 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 30 | 30 | AY.9.2 | 0.001102 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 29 | 29 | B.1.1.222 | 0.005916 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 29 | 29 | P.2 | 0.005412 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 28 | 28 | AY.45 | 0.003407 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 28 | 28 | AY.75 | 0.001569 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 28 | 28 | B.1.591 | 0.297872 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 28 | 28 | P.1 | 0.000441 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 27 | 27 | AY.33 | 0.001803 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 27 | 27 | B.1.36.29 | 0.013968 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 26 | 26 | AD.2 | 0.005693 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 26 | 26 | B.1.232 | 0.013971 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 25 | 25 | AY.102 | 0.000663 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 25 | 25 | B.1.258.14 | 0.02451 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 25 | 25 | R.1 | 0.00225 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 24 | 24 | AY.25 | 0.000144 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 23 | 23 | AY.50 | 0.018385 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 23 | 23 | B.1.1.214 | 0.001276 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 23 | 23 | B.1.588 | 0.020928 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 22 | 22 | A.28 | 0.058201 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 22 | 22 | AY.117 | 0.001859 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 22 | 22 | B.1.177 | 0.00029 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 21 | 21 | AY.98 | 0.001659 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 21 | 21 | B.1.1.209 | 0.1875 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 21 | 21 | B.1.1.50 | 0.014257 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 21 | 21 | B.1.438.1 | 0.002252 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 21 | 21 | B.1.8 | 0.04142 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 20 | 20 | AY.36 | 0.002964 |
ORF1ab/nsp2 | 369 | S369A | Tcc | Gcc | 20 | 20 | B.1.1.369 | 0.008925 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 20 | 20 | B.1.1.487 | 0.111732 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 19 | 20 | B.1.596 | 0.001656 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 1 | 20 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 19 | 19 | AY.27 | 0.00123 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 19 | 19 | B.1.1.448 | 0.038618 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 19 | 19 | B.1.177 | 0.00025 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 19 | 19 | B.1.324 | 0.030498 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 18 | 18 | AY.39.1 | 0.000713 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 18 | 18 | B.1.1.37 | 0.003472 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 18 | 18 | B.1.177.60 | 0.003932 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 16 | 17 | AY.46 | 0.001665 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 1 | 17 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 17 | 17 | AY.9 | 0.001149 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 16 | 17 | B.1.1 | 0.00029 |
ORF1ab/nsp2 | 369 | S369F | tCC | tTT | 1 | 17 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 17 | 17 | B.1.177.16 | 0.011296 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 17 | 17 | B.1.577 | 0.011684 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 17 | 17 | B.1.582 | 0.008342 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 17 | 17 | C.1.2 | 0.07234 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 17 | 17 | R.1 | 0.00153 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 16 | 16 | A.2.5.2 | 0.025157 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 16 | 16 | AY.66 | 0.017112 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 8 | 16 | B.1.429 | 0.000188 |
ORF1ab/nsp2 | 369 | S369F | tCC | tTT | 8 | 16 | B.1.429 | 0.000188 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 16 | 16 | B.1.466.2 | 0.00626 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 16 | 16 | B.1.617.1 | 0.002063 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 16 | 16 | P.1.16 | 0.005986 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 15 | 15 | AY.42 | 0.000603 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 15 | 15 | AY.48 | 0.006977 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 15 | 15 | AY.75 | 0.00084 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 15 | 15 | B.1.1.25 | 0.008528 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 13 | 15 | D.2 | 0.000976 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 2 | 15 | D.2 | 0.00015 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 14 | 14 | C.27 | 0.259259 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 14 | 14 | Q.8 | 0.002309 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 13 | 13 | AY.35 | 0.00303 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 13 | 13 | AY.5 | 0.000268 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 13 | 13 | B.1.1.397 | 0.029279 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 13 | 13 | C.1 | 0.0311 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 12 | 12 | AY.5.4 | 0.00332 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 12 | 12 | B.1.1.244 | 0.184615 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 12 | 12 | B.1.1.258 | 0.039088 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 12 | 12 | B.1.162 | 0.060302 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 12 | 12 | B.1.234 | 0.001583 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 12 | 12 | B.1.480 | 0.029851 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 12 | 12 | B.3 | 0.009967 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 12 | 12 | Q.3 | 0.00174 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 11 | 11 | A | 0.004257 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 11 | 11 | A.2.5 | 0.005489 |
ORF1ab/nsp2 | 369 | S369del1 | tCc | t-c | 7 | 11 | All | 0.000001 |
ORF1ab/nsp2 | 369 | S369del1 | Tcc | -cc | 3 | 11 | All | 0.000001 |
ORF1ab/nsp2 | 369 | S369del1 | tcC | tc- | 1 | 11 | All | 0 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 11 | 11 | AY.110 | 0.00124 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 11 | 11 | AY.5.3 | 0.003711 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 11 | 11 | AY.98.1 | 0.000533 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 11 | 11 | B.1.1.7 | 0.00001 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 11 | 11 | B.1.236 | 0.022587 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 11 | 11 | B.1.243 | 0.000765 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 11 | 11 | B.1.623 | 0.005901 |
ORF1ab/nsp2 | 369 | S369C | tCc | tGc | 10 | 10 | All | 0.000002 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 9 | 10 | AY.4.2.1 | 0.001341 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 1 | 10 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 10 | 10 | AY.47 | 0.000311 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 10 | 10 | AY.68 | 0.002737 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 10 | 10 | AY.74 | 0.001156 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 10 | 10 | AY.9 | 0.000676 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 10 | 10 | B.1.1.519 | 0.000397 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 10 | 10 | B.1.258.17 | 0.00104 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 10 | 10 | B.1.469 | 0.036101 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 10 | 10 | B.6.6 | 0.008889 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 8 | 9 | AY.111 | 0.001465 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 1 | 9 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 9 | 9 | AY.26 | 0.000255 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 9 | 9 | AY.39 | 0.000222 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 9 | 9 | B.1.1.326 | 0.015845 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 9 | 9 | B.1.177.52 | 0.015817 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 9 | 9 | B.1.324 | 0.014446 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 9 | 9 | B.1.402 | 0.088235 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 9 | 9 | P.1.15 | 0.002091 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 8 | 8 | AY.106 | 0.002679 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 8 | 8 | AY.12 | 0.002528 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 8 | 8 | AY.34.1 | 0.00408 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 8 | 8 | B.1.1.125 | 0.081633 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 8 | 8 | B.1.1.50 | 0.005431 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp2 | 369 | S369C | tCc | tGc | 8 | 8 | B.1.1.7 | 0.000007 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 8 | 8 | B.1.311 | 0.002197 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 8 | 8 | B.1.367 | 0.006339 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 8 | 8 | B.1.400 | 0.003432 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 8 | 8 | B.1.576 | 0.007253 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 8 | 8 | B.1.595 | 0.002088 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 8 | 8 | B.1.634 | 0.027397 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 7 | 7 | A.1 | 0.001973 |
ORF1ab/nsp2 | 369 | S369P | Tcc | Ccc | 7 | 7 | All | 0.000001 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 7 | 7 | AY.114 | 0.001618 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 7 | 7 | AY.30 | 0.00277 |
ORF1ab/nsp2 | 369 | S369A | Tcc | Gcc | 7 | 7 | AY.4 | 0.000011 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 7 | 7 | AY.46.6 | 0.000505 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 6 | 7 | AY.9.1 | 0.000502 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 1 | 7 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 7 | 7 | B.1.1.294 | 0.008861 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 7 | 7 | B.1.1.389 | 0.042424 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 7 | B.1.36.8 | 0.004 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 3 | 7 | B.1.36.8 | 0.003 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 7 | 7 | B.1.400 | 0.003003 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 7 | 7 | B.1.470 | 0.009831 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 7 | 7 | B.1.595 | 0.001827 |
ORF1ab/nsp2 | 369 | S369Y | tCc | tAc | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 7 | 7 | B.3.1 | 0.011609 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 6 | 6 | AY.104 | 0.011905 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 6 | 6 | AY.16 | 0.002278 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 6 | 6 | AY.33 | 0.000401 |
ORF1ab/nsp2 | 369 | S369Y | tCc | tAc | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 6 | 6 | AY.52 | 0.004886 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 6 | 6 | AY.69 | 0.00112 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 6 | 6 | AY.75.1 | 0.001082 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 6 | 6 | AY.8 | 0.003636 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 6 | 6 | B.1.1.280 | 0.018519 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 6 | 6 | B.1.240 | 0.001293 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 6 | 6 | B.1.416 | 0.007614 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 6 | 6 | B.1.525 | 0.000679 |
ORF1ab/nsp2 | 369 | S369A | Tcc | Gcc | 6 | 6 | B.1.617.2 | 0.000023 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 6 | 6 | C.36 | 0.005464 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 6 | 6 | P.3 | 0.009569 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 5 | 6 | Q.3 | 0.000725 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcG | 1 | 6 | Q.3 | 0.000145 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 5 | 5 | AY.1 | 0.001979 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 5 | 5 | AY.120.2 | 0.006427 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp2 | 369 | S369Y | tCc | tAc | 5 | 5 | AY.44 | 0.00003 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 5 | 5 | AY.46.2 | 0.003177 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 5 | 5 | AY.54 | 0.000477 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 5 | 5 | AY.77 | 0.005637 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 5 | 5 | AY.78 | 0.007704 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 5 | 5 | AY.84 | 0.002187 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 5 | 5 | AY.90 | 0.003422 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 5 | 5 | AY.92 | 0.001436 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 5 | 5 | AY.99 | 0.005247 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 5 | 5 | B.1.1.159 | 0.023364 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 5 | 5 | B.1.1.170 | 0.006234 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 5 | 5 | B.1.1.291 | 0.003712 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 5 | 5 | B.1.1.33 | 0.002104 |
ORF1ab/nsp2 | 369 | S369A | Tcc | Gcc | 5 | 5 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 5 | 5 | B.1.160 | 0.000156 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 5 | 5 | B.1.177.58 | 0.006658 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 5 | 5 | B.1.389 | 0.00501 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 5 | 5 | B.1.404 | 0.00651 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 4 | 5 | B.1.427 | 0.000202 |
ORF1ab/nsp2 | 369 | S369F | tCC | tTT | 1 | 5 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 5 | 5 | B.1.429.1 | 0.060241 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 5 | 5 | B.1.497 | 0.001574 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 5 | 5 | B.1.564.1 | 0.007886 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 5 | 5 | B.1.596 | 0.000436 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 5 | 5 | B.1.605 | 0.029762 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 5 | 5 | B.40 | 0.001821 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 5 | 5 | Q.1 | 0.000632 |
ORF1ab/nsp2 | 369 | S369L | TCc | CTc | 4 | 4 | All | 0.000001 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 4 | AY.113 | 0.00057 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 4 | AY.120.1 | 0.000642 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 2 | 4 | AY.120.1 | 0.000642 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 4 | AY.120.2 | 0.005141 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 4 | AY.16.1 | 0.00141 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 1 | 4 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 4 | AY.32 | 0.00213 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 4 | AY.53 | 0.00115 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 4 | AY.7 | 0.000784 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 4 | B.1.1.121 | 0.009709 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 4 | B.1.1.207 | 0.004728 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 4 | B.1.1.265 | 0.012618 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 4 | B.1.1.306 | 0.001754 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 4 | B.1.1.434 | 0.001394 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 4 | B.1.1.516 | 0.266667 |
ORF1ab/nsp2 | 369 | S369Y | tCc | tAc | 4 | 4 | B.1.1.7 | 0.000004 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 4 | B.1.1.74 | 0.017241 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 4 | B.1.158 | 0.095238 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 4 | 4 | B.1.177.15 | 0.002524 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 4 | B.1.177.45 | 0.001525 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 4 | B.1.177.5 | 0.004969 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 4 | B.1.177.82 | 0.001909 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 4 | 4 | B.1.177.86 | 0.000734 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 4 | 4 | B.1.258 | 0.000266 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 4 | B.1.265 | 0.005083 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 4 | 4 | B.1.351 | 0.000119 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 4 | B.1.351.3 | 0.002629 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 1 | 4 | B.1.351.3 | 0.000876 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 4 | B.1.36.18 | 0.001681 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 4 | B.1.396 | 0.002823 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 4 | B.1.537 | 0.08 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 4 | B.1.561 | 0.001588 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 4 | 4 | N.6 | 0.028369 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 3 | 3 | AB.1 | 0.02459 |
ORF1ab/nsp2 | 369 | S369del2 | tCC | t-- | 2 | 3 | All | 0 |
ORF1ab/nsp2 | 369 | S369del2 | TCc | --c | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | AY.101 | 0.001471 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 3 | 3 | AY.41 | 0.000882 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | AY.46.2 | 0.001906 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | AY.5.1 | 0.011278 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | AY.51 | 0.002727 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | AY.62 | 0.001307 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | B.1.1.141 | 0.006036 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | B.1.1.219 | 0.015 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | B.1.1.220 | 0.005576 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | B.1.1.284 | 0.000322 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | B.1.1.316 | 0.002775 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | B.1.1.354 | 0.013158 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 3 | 3 | B.1.1.39 | 0.001529 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | B.1.1.433 | 0.004274 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | B.1.1.464 | 0.004418 |
ORF1ab/nsp2 | 369 | S369L | TCc | CTc | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | B.1.111 | 0.003525 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | B.1.126 | 0.003827 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | B.1.139 | 0.002199 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | B.1.147 | 0.002268 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 3 | 3 | B.1.177.69 | 0.004451 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp2 | 369 | S369del1 | tCc | t-c | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | B.1.214.2 | 0.001799 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 3 | 3 | B.1.240 | 0.000647 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 3 | 3 | B.1.258.11 | 0.001189 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 3 | 3 | B.1.361 | 0.003866 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | B.1.399 | 0.005803 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 3 | 3 | B.1.525 | 0.000339 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | B.1.549 | 0.021583 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 3 | 3 | B.1.565 | 0.002431 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 3 | 3 | B.1.637 | 0.000219 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | B.4 | 0.006623 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | C.11 | 0.031915 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | C.35 | 0.002322 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 3 | 3 | P.1.12 | 0.001452 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | A.2.5 | 0.000998 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | A.2.5.3 | 0.020619 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | AE.8 | 0.000978 |
ORF1ab/nsp2 | 369 | S369A | Tcc | Gcc | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | AY.117 | 0.000169 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | AY.16 | 0.000759 |
ORF1ab/nsp2 | 369 | S369A | Tcc | Gcc | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | AY.27 | 0.000129 |
ORF1ab/nsp2 | 369 | S369A | Tcc | Gcc | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | AY.39.2 | 0.003082 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 369 | S369A | Tcc | Gcc | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 2 | 2 | AY.41 | 0.000588 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp2 | 369 | S369A | Tcc | Gcc | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 369 | S369T | TcC | AcT | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 1 | 2 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | AY.46.3 | 0.001867 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | AY.70 | 0.000417 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | AY.72 | 0.002721 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | AY.81 | 0.003984 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | AY.82 | 0.002714 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 2 | 2 | AY.89 | 0.009804 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | AY.9.2.1 | 0.003953 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | AZ.3 | 0.00304 |
ORF1ab/nsp2 | 369 | S369Y | tCc | tAc | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 369 | S369del1 | tCc | t-c | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp2 | 369 | S369del1 | Tcc | -cc | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.1.176 | 0.000879 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | B.1.1.214 | 0.000111 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | B.1.1.219 | 0.01 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.1.307 | 0.005063 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.1.312 | 0.003824 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.1.374 | 0.004751 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.1.397 | 0.004505 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.1.420 | 0.002012 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.1.467 | 0.038462 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.1.525 | 0.010929 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.1.528 | 0.009615 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.1.53 | 0.027397 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.1.70 | 0.000682 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.1.89 | 0.012121 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | B.1.126 | 0.002551 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.160.14 | 0.004237 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 2 | 2 | B.1.177.50 | 0.00939 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.177.54 | 0.001213 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.177.64 | 0.181818 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.177.65 | 0.001331 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.177.69 | 0.002967 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.177.73 | 0.001133 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.182 | 0.014493 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.189 | 0.008584 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.258.11 | 0.000793 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | B.1.258.14 | 0.001961 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.258.7 | 0.003824 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | B.1.265 | 0.002541 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.336 | 0.004878 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 1 | 2 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 2 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.36.16 | 0.002849 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | B.1.36.18 | 0.00084 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.420 | 0.020833 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 2 | 2 | B.1.424 | 0.016129 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.428 | 0.002041 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.436 | 0.002058 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.473 | 0.038462 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.497 | 0.00063 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.507 | 0.022472 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.538 | 0.016129 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.567 | 0.006667 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp2 | 369 | S369P | Tcc | Ccc | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.597 | 0.009259 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp2 | 369 | S369del2 | tCC | t-- | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 2 | B.1.620 | 0.000946 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 1 | 2 | B.1.620 | 0.000946 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.1.631 | 0.006734 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.3 | 0.001661 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.3.1 | 0.003317 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.40 | 0.000729 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | C.16 | 0.002121 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | N.3 | 0.011628 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp2 | 369 | S369Y | tCc | tAc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AH.3 | 0.003802 |
ORF1ab/nsp2 | 369 | S369V | TCc | GTc | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp2 | 369 | S369A | Tcc | Gcc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 369 | S369C | tCc | tGc | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 369 | S369del1 | tCc | t-c | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp2 | 369 | S369Y | tCc | tAc | 1 | 1 | AY.107 | 0.000466 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AY.115 | 0.005208 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 369 | S369del1 | tCc | t-c | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 369 | S369A | Tcc | Gcc | 1 | 1 | AY.17 | 0.008197 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.23.1 | 0.000417 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp2 | 369 | S369Y | tCc | tAc | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 369 | S369P | Tcc | Ccc | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp2 | 369 | S369del1 | tCc | t-c | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp2 | 369 | S369A | Tcc | Gcc | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AY.73 | 0.000665 |
ORF1ab/nsp2 | 369 | S369del1 | Tcc | -cc | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AY.95 | 0.000761 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp2 | 369 | S369Y | tCc | tAc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 369 | S369C | tCc | tGc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 369 | S369P | Tcc | Ccc | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcA | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.1.128 | 0.007092 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.138 | 0.006061 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.144 | 0.028571 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.15 | 0.013514 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.166 | 0.033333 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.198 | 0.001468 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.200 | 0.007463 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.201 | 0.02439 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.231 | 0.003096 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.232 | 0.001815 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.234 | 0.012048 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.1.289 | 0.002083 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.291 | 0.000742 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.302 | 0.002075 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 369 | S369A | Tcc | Gcc | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.1.322 | 0.008772 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.323 | 0.014085 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.347 | 0.018182 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp2 | 369 | S369P | Tcc | Ccc | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp2 | 369 | S369A | Tcc | Gcc | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.363 | 0.005988 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp2 | 369 | S369A | Tcc | Gcc | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.1.370 | 0.012658 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.385 | 0.004464 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.1.437 | 0.010417 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.442 | 0.018519 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.1.525 | 0.005464 |
ORF1ab/nsp2 | 369 | S369P | Tcc | Ccc | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.1.74 | 0.00431 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.110 | 0.004525 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.112 | 0.005181 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.128 | 0.000635 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.143 | 0.021277 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp2 | 369 | S369V | TCc | GTc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 369 | S369L | TCc | CTc | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.160.26 | 0.002421 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.160.33 | 0.004425 |
ORF1ab/nsp2 | 369 | S369del1 | tcC | tc- | 1 | 1 | B.1.160.7 | 0.002079 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.160.8 | 0.001289 |
ORF1ab/nsp2 | 369 | S369P | Tcc | Ccc | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 369 | S369del2 | TCc | --c | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.177.26 | 0.006993 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.177.30 | 0.002513 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.177.43 | 0.001477 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.177.59 | 0.016129 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.177.65 | 0.000665 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.177.74 | 0.015152 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.177.8 | 0.000752 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp2 | 369 | S369A | Tcc | Gcc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 369 | S369Y | tCc | tAc | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.203 | 0.0625 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.221.4 | 0.004167 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.223 | 0.002778 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.237 | 0.004975 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.243.2 | 0.014493 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcG | 1 | 1 | B.1.258.16 | 0.001637 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.258.4 | 0.003448 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.298 | 0.002114 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.302 | 0.013333 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.337 | 0.005587 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.338 | 0.008621 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp2 | 369 | S369Y | tCc | tAc | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.36.20 | 0.016949 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.36.22 | 0.001208 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.36.24 | 0.006173 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.36.25 | 0.002208 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.391 | 0.001127 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.406 | 0.006061 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.411 | 0.003704 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.421 | 0.007463 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.441 | 0.009615 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.460 | 0.017857 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.474 | 0.001901 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.475 | 0.142857 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.495 | 0.009091 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.510 | 0.026316 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.556 | 0.007519 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 369 | S369Y | tCc | tAc | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 369 | S369F | tCC | tTT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 369 | S369del1 | Tcc | -cc | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.617.3 | 0.002985 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.1.630 | 0.005236 |
ORF1ab/nsp2 | 369 | S369A | Tcc | Gcc | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 1 | 1 | B.57 | 0.015152 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | C.23 | 0.005814 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 369 | S369Y | tCc | tAc | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | C.37.1 | 0.002618 |
ORF1ab/nsp2 | 369 | S369T | Tcc | Acc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 369 | S369A | Tcc | Gcc | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp2 | 369 | S369S | tcC | tcT | 1 | 1 | P.1.6 | 0.001946 |
ORF1ab/nsp2 | 369 | S369F | tCc | tTc | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 369 | S369del | TCC | --- | 1 | 1 | Q.1 | 0.000126 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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