CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 361 | A361V | A541V | nonsyn | gCt | gTt | 3472 | 3472 | 1 | 1886-1888 |
ORF1ab/nsp2 | 361 | A361A | A541A | syn | gcT | gcC | 451 | 401 | 0.889135 | 1886-1888 |
ORF1ab/nsp2 | 361 | A361A | A541A | syn | gcT | gcG | 451 | 46 | 0.101996 | 1886-1888 |
ORF1ab/nsp2 | 361 | A361A | A541A | syn | gcT | gcA | 451 | 4 | 0.00886918 | 1886-1888 |
ORF1ab/nsp2 | 361 | A361T | A541T | nonsyn | Gct | Act | 397 | 397 | 1 | 1886-1888 |
ORF1ab/nsp2 | 361 | A361S | A541S | nonsyn | Gct | Tct | 145 | 145 | 1 | 1886-1888 |
ORF1ab/nsp2 | 361 | A361del | A541del | del | GCT | --- | 37 | 37 | 1 | 1886-1888 |
ORF1ab/nsp2 | 361 | A361G | A541G | nonsyn | gCt | gGt | 12 | 10 | 0.833333 | 1886-1888 |
ORF1ab/nsp2 | 361 | A361G | A541G | nonsyn | gCT | gGC | 12 | 1 | 0.0833333 | 1886-1888 |
ORF1ab/nsp2 | 361 | A361G | A541G | nonsyn | gCT | gGA | 12 | 1 | 0.0833333 | 1886-1888 |
ORF1ab/nsp2 | 361 | A361P | A541P | nonsyn | Gct | Cct | 10 | 10 | 1 | 1886-1888 |
ORF1ab/nsp2 | 361 | A361D | A541D | nonsyn | gCt | gAt | 8 | 8 | 1 | 1886-1888 |
ORF1ab/nsp2 | 361 | A361del1 | A541del1 | del | gCt | g-t | 2 | 1 | 0.5 | 1886-1888 |
ORF1ab/nsp2 | 361 | A361del1 | A541del1 | del | Gct | -ct | 2 | 1 | 0.5 | 1886-1888 |
ORF1ab/nsp2 | 361 | A361del2 | A541del2 | del | GCt | --t | 1 | 1 | 1 | 1886-1888 |
ORF1ab/nsp2 | 361 | A361R | A541R | nonsyn | GCt | CGt | 1 | 1 | 1 | 1886-1888 |
ORF1ab/nsp2 | 361 | A361F | A541F | nonsyn | GCt | TTt | 1 | 1 | 1 | 1886-1888 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 3472 | 3472 | All | 0.000664 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1205 | 1205 | B.1.177.21 | 0.092147 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 772 | 772 | B.1.1.7 | 0.000691 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 401 | 451 | All | 0.000077 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcG | 46 | 451 | All | 0.000009 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcA | 4 | 451 | All | 0.000001 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 397 | 397 | All | 0.000076 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 371 | 371 | B.1.525 | 0.041983 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 265 | 265 | B.1.2 | 0.002333 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 168 | 168 | B.1.429 | 0.003953 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 155 | 155 | AY.4 | 0.000241 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 145 | 145 | All | 0.000028 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 138 | 138 | AY.25 | 0.00083 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 124 | 124 | B.1.617.2 | 0.000467 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 118 | 118 | B.1.166 | 1 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 71 | 71 | B.1.517 | 0.030316 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 55 | 55 | B.1.2 | 0.000484 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 48 | 48 | AY.120.1 | 0.015409 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 45 | 45 | AY.121 | 0.006089 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 45 | 45 | B.1.258 | 0.002995 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 41 | 41 | B.1.1.39 | 0.020897 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 38 | 38 | AY.26 | 0.001076 |
ORF1ab/nsp2 | 361 | A361del | GCT | --- | 37 | 37 | All | 0.000007 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 28 | 28 | B.1.427 | 0.001414 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 14 | 26 | AY.4 | 0.000022 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcG | 12 | 26 | AY.4 | 0.000019 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 26 | 26 | AY.44 | 0.000158 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 24 | 24 | AY.3 | 0.000239 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 24 | 24 | AY.92 | 0.006895 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 23 | 23 | B.1.351 | 0.000684 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 21 | 21 | B.1.1.7 | 0.000019 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 18 | 18 | AY.4 | 0.000028 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 18 | 18 | B.1 | 0.000165 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 17 | 17 | AY.43 | 0.000075 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 16 | 16 | AY.103 | 0.000099 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 15 | 15 | AY.103 | 0.000093 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 13 | 13 | B.1.1 | 0.000236 |
ORF1ab/nsp2 | 361 | A361G | gCt | gGt | 10 | 12 | All | 0.000002 |
ORF1ab/nsp2 | 361 | A361G | gCT | gGA | 1 | 12 | All | 0 |
ORF1ab/nsp2 | 361 | A361G | gCT | gGC | 1 | 12 | All | 0 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 12 | 12 | B.1 | 0.00011 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 11 | 11 | AY.121 | 0.001488 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 11 | 11 | AY.4 | 0.000017 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 11 | 11 | AY.43 | 0.000049 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 11 | 11 | AY.44 | 0.000067 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp2 | 361 | A361P | Gct | Cct | 10 | 10 | All | 0.000002 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 10 | 10 | AY.46.6 | 0.000722 |
ORF1ab/nsp2 | 361 | A361del | GCT | --- | 10 | 10 | B.1.1.7 | 0.000009 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcG | 10 | 10 | B.1.177.10 | 0.00878 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 10 | 10 | B.1.617.2 | 0.000038 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 9 | 9 | AY.47 | 0.00028 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 9 | 9 | AY.84 | 0.003937 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 9 | 9 | B.1.177 | 0.000119 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 9 | 9 | B.1.2 | 0.000079 |
ORF1ab/nsp2 | 361 | A361D | gCt | gAt | 8 | 8 | All | 0.000002 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 8 | 8 | B.1.160 | 0.00025 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 8 | 8 | B.1.177.77 | 0.00581 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 7 | 7 | AY.30 | 0.00277 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 7 | 7 | AY.39 | 0.000173 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 7 | 7 | AY.43 | 0.000031 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 7 | 7 | AY.57 | 0.004593 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 7 | 7 | AY.9.2 | 0.000257 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcG | 4 | 7 | B.1 | 0.000037 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 2 | 7 | B.1 | 0.000018 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcA | 1 | 7 | B.1 | 0.000009 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcG | 7 | 7 | B.1.1.432 | 0.008861 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 7 | 7 | B.1.568 | 0.007778 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 6 | 6 | AY.120 | 0.000223 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 6 | 6 | AY.9 | 0.000406 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 6 | 6 | AY.9.1 | 0.000502 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 5 | 5 | AY.20 | 0.000194 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 5 | 5 | AY.25 | 0.00003 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 3 | 5 | B.1.1 | 0.000054 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcG | 2 | 5 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 4 | 4 | AY.100 | 0.000184 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 4 | 4 | AY.102 | 0.000106 |
ORF1ab/nsp2 | 361 | A361G | gCt | gGt | 4 | 4 | AY.26 | 0.000113 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp2 | 361 | A361del | GCT | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp2 | 361 | A361del | GCT | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcG | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp2 | 361 | A361G | gCt | gGt | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 3 | 3 | AY.4.2 | 0.000065 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 3 | 3 | AY.4.2.1 | 0.000447 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcG | 2 | 3 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 1 | 3 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcG | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp2 | 361 | A361P | Gct | Cct | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 361 | A361del | GCT | --- | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 3 | 3 | B.1.177.58 | 0.003995 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 3 | 3 | B.1.177.60 | 0.000655 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 3 | 3 | B.3 | 0.002492 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 3 | 3 | B.40 | 0.001093 |
ORF1ab/nsp2 | 361 | A361G | gCT | gGA | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 361 | A361G | gCt | gGt | 1 | 2 | 0.055556 | |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 2 | 2 | A.1 | 0.000564 |
ORF1ab/nsp2 | 361 | A361del1 | gCt | g-t | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 361 | A361del1 | Gct | -ct | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 2 | 2 | AY.102 | 0.000053 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcA | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 2 | 2 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 2 | 2 | AY.33 | 0.000134 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp2 | 361 | A361del | GCT | --- | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 2 | 2 | AY.75 | 0.000112 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 2 | 2 | B.1.1.307 | 0.005063 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 2 | 2 | B.1.1.517 | 0.013605 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 2 | 2 | B.1.1.519 | 0.000079 |
ORF1ab/nsp2 | 361 | A361P | Gct | Cct | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 2 | 2 | B.1.177.35 | 0.001382 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcA | 1 | 2 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 1 | 2 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 2 | 2 | B.1.466.2 | 0.000782 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp2 | 361 | A361del | GCT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 2 | 2 | P.1.13 | 0.001797 |
ORF1ab/nsp2 | 361 | A361del | GCT | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 2 | 2 | Q.8 | 0.00033 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcA | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp2 | 361 | A361F | GCt | TTt | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 361 | A361R | GCt | CGt | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 361 | A361del2 | GCt | --t | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AU.2 | 0.002421 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp2 | 361 | A361del | GCT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 361 | A361D | gCt | gAt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 361 | A361del | GCT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 361 | A361del1 | gCt | g-t | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 361 | A361D | gCt | gAt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 361 | A361del | GCT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 361 | A361D | gCt | gAt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp2 | 361 | A361del1 | Gct | -ct | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 361 | A361D | gCt | gAt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 361 | A361D | gCt | gAt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp2 | 361 | A361del | GCT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | AY.81 | 0.001992 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 361 | A361del | GCT | --- | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 361 | A361P | Gct | Cct | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | B.1.1.180 | 0.010753 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.1.219 | 0.005 |
ORF1ab/nsp2 | 361 | A361del | GCT | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | B.1.1.351 | 0.002793 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 1 | 1 | B.1.1.365 | 0.005587 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp2 | 361 | A361D | gCt | gAt | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp2 | 361 | A361D | gCt | gAt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 361 | A361del2 | GCt | --t | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.1.83 | 0.00271 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 1 | 1 | B.1.160.12 | 0.00641 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.160.31 | 0.008065 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.170 | 0.00431 |
ORF1ab/nsp2 | 361 | A361del | GCT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 361 | A361P | Gct | Cct | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcG | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 361 | A361F | GCt | TTt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcG | 1 | 1 | B.1.305 | 0.002151 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 361 | A361del | GCT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 361 | A361G | gCt | gGt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 361 | A361del | GCT | --- | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 1 | 1 | B.1.456 | 0.003268 |
ORF1ab/nsp2 | 361 | A361R | GCt | CGt | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 361 | A361G | gCT | gGC | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.565 | 0.00081 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.591 | 0.010638 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 361 | A361D | gCt | gAt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 361 | A361S | Gct | Tct | 1 | 1 | B.1.619.1 | 0.000641 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp2 | 361 | A361P | Gct | Cct | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 361 | A361A | gcT | gcC | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | B.6.6 | 0.000889 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 361 | A361G | gCt | gGt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 361 | A361P | Gct | Cct | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 361 | A361T | Gct | Act | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 361 | A361P | Gct | Cct | 1 | 1 | P.1.10 | 0.000269 |
ORF1ab/nsp2 | 361 | A361del | GCT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 361 | A361V | gCt | gTt | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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