CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 361

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2361A361VA541VnonsyngCtgTt3472347211886-1888
ORF1ab/nsp2361A361AA541AsyngcTgcC4514010.8891351886-1888
ORF1ab/nsp2361A361AA541AsyngcTgcG451460.1019961886-1888
ORF1ab/nsp2361A361AA541AsyngcTgcA45140.008869181886-1888
ORF1ab/nsp2361A361TA541TnonsynGctAct39739711886-1888
ORF1ab/nsp2361A361SA541SnonsynGctTct14514511886-1888
ORF1ab/nsp2361A361delA541deldelGCT---373711886-1888
ORF1ab/nsp2361A361GA541GnonsyngCtgGt12100.8333331886-1888
ORF1ab/nsp2361A361GA541GnonsyngCTgGC1210.08333331886-1888
ORF1ab/nsp2361A361GA541GnonsyngCTgGA1210.08333331886-1888
ORF1ab/nsp2361A361PA541PnonsynGctCct101011886-1888
ORF1ab/nsp2361A361DA541DnonsyngCtgAt8811886-1888
ORF1ab/nsp2361A361del1A541del1delgCtg-t210.51886-1888
ORF1ab/nsp2361A361del1A541del1delGct-ct210.51886-1888
ORF1ab/nsp2361A361del2A541del2delGCt--t1111886-1888
ORF1ab/nsp2361A361RA541RnonsynGCtCGt1111886-1888
ORF1ab/nsp2361A361FA541FnonsynGCtTTt1111886-1888

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2361A361VgCtgTt34723472All0.000664
ORF1ab/nsp2361A361VgCtgTt12051205B.1.177.210.092147
ORF1ab/nsp2361A361VgCtgTt772772B.1.1.70.000691
ORF1ab/nsp2361A361AgcTgcC401451All0.000077
ORF1ab/nsp2361A361AgcTgcG46451All0.000009
ORF1ab/nsp2361A361AgcTgcA4451All0.000001
ORF1ab/nsp2361A361TGctAct397397All0.000076
ORF1ab/nsp2361A361VgCtgTt371371B.1.5250.041983
ORF1ab/nsp2361A361AgcTgcC265265B.1.20.002333
ORF1ab/nsp2361A361TGctAct168168B.1.4290.003953
ORF1ab/nsp2361A361VgCtgTt155155AY.40.000241
ORF1ab/nsp2361A361SGctTct145145All0.000028
ORF1ab/nsp2361A361VgCtgTt138138AY.250.00083
ORF1ab/nsp2361A361VgCtgTt124124B.1.617.20.000467
ORF1ab/nsp2361A361VgCtgTt118118B.1.1661
ORF1ab/nsp2361A361SGctTct7171B.1.5170.030316
ORF1ab/nsp2361A361VgCtgTt5555B.1.20.000484
ORF1ab/nsp2361A361VgCtgTt4848AY.120.10.015409
ORF1ab/nsp2361A361VgCtgTt4545AY.1210.006089
ORF1ab/nsp2361A361VgCtgTt4545B.1.2580.002995
ORF1ab/nsp2361A361TGctAct4141B.1.1.390.020897
ORF1ab/nsp2361A361VgCtgTt3838AY.260.001076
ORF1ab/nsp2361A361delGCT---3737All0.000007
ORF1ab/nsp2361A361TGctAct2828B.1.4270.001414
ORF1ab/nsp2361A361AgcTgcC1426AY.40.000022
ORF1ab/nsp2361A361AgcTgcG1226AY.40.000019
ORF1ab/nsp2361A361VgCtgTt2626AY.440.000158
ORF1ab/nsp2361A361VgCtgTt2424AY.30.000239
ORF1ab/nsp2361A361VgCtgTt2424AY.920.006895
ORF1ab/nsp2361A361VgCtgTt2323B.1.3510.000684
ORF1ab/nsp2361A361AgcTgcC2121B.1.1.70.000019
ORF1ab/nsp2361A361SGctTct1818AY.40.000028
ORF1ab/nsp2361A361VgCtgTt1818B.10.000165
ORF1ab/nsp2361A361AgcTgcC1717AY.430.000075
ORF1ab/nsp2361A361TGctAct1616AY.1030.000099
ORF1ab/nsp2361A361VgCtgTt1515AY.1030.000093
ORF1ab/nsp2361A361VgCtgTt1313B.1.10.000236
ORF1ab/nsp2361A361GgCtgGt1012All0.000002
ORF1ab/nsp2361A361GgCTgGA112All0
ORF1ab/nsp2361A361GgCTgGC112All0
ORF1ab/nsp2361A361TGctAct1212B.10.00011
ORF1ab/nsp2361A361TGctAct1111AY.1210.001488
ORF1ab/nsp2361A361TGctAct1111AY.40.000017
ORF1ab/nsp2361A361VgCtgTt1111AY.430.000049
ORF1ab/nsp2361A361TGctAct1111AY.440.000067
ORF1ab/nsp2361A361AgcTgcC1111B.1.617.20.000041
ORF1ab/nsp2361A361PGctCct1010All0.000002
ORF1ab/nsp2361A361VgCtgTt1010AY.46.60.000722
ORF1ab/nsp2361A361delGCT---1010B.1.1.70.000009
ORF1ab/nsp2361A361AgcTgcG1010B.1.177.100.00878
ORF1ab/nsp2361A361TGctAct1010B.1.617.20.000038
ORF1ab/nsp2361A361AgcTgcC99AY.470.00028
ORF1ab/nsp2361A361VgCtgTt99AY.840.003937
ORF1ab/nsp2361A361TGctAct99B.1.1.70.000008
ORF1ab/nsp2361A361VgCtgTt99B.1.1770.000119
ORF1ab/nsp2361A361TGctAct99B.1.20.000079
ORF1ab/nsp2361A361DgCtgAt88All0.000002
ORF1ab/nsp2361A361TGctAct88B.1.10.000145
ORF1ab/nsp2361A361VgCtgTt88B.1.1600.00025
ORF1ab/nsp2361A361VgCtgTt88B.1.177.770.00581
ORF1ab/nsp2361A361TGctAct77AY.300.00277
ORF1ab/nsp2361A361VgCtgTt77AY.390.000173
ORF1ab/nsp2361A361SGctTct77AY.430.000031
ORF1ab/nsp2361A361VgCtgTt77AY.570.004593
ORF1ab/nsp2361A361VgCtgTt77AY.9.20.000257
ORF1ab/nsp2361A361AgcTgcG47B.10.000037
ORF1ab/nsp2361A361AgcTgcC27B.10.000018
ORF1ab/nsp2361A361AgcTgcA17B.10.000009
ORF1ab/nsp2361A361AgcTgcG77B.1.1.4320.008861
ORF1ab/nsp2361A361VgCtgTt77B.1.5680.007778
ORF1ab/nsp2361A361VgCtgTt66AY.1200.000223
ORF1ab/nsp2361A361VgCtgTt66AY.90.000406
ORF1ab/nsp2361A361VgCtgTt66AY.9.10.000502
ORF1ab/nsp2361A361SGctTct66B.1.1.70.000005
ORF1ab/nsp2361A361VgCtgTt55AY.1180.000313
ORF1ab/nsp2361A361AgcTgcC55AY.200.000194
ORF1ab/nsp2361A361TGctAct55AY.250.00003
ORF1ab/nsp2361A361AgcTgcC55AY.3.10.000426
ORF1ab/nsp2361A361SGctTct55B.10.000046
ORF1ab/nsp2361A361AgcTgcC35B.1.10.000054
ORF1ab/nsp2361A361AgcTgcG25B.1.10.000036
ORF1ab/nsp2361A361VgCtgTt55B.1.1.5190.000199
ORF1ab/nsp2361A361SGctTct55B.1.617.20.000019
ORF1ab/nsp2361A361AgcTgcC44AY.1000.000184
ORF1ab/nsp2361A361VgCtgTt44AY.1020.000106
ORF1ab/nsp2361A361GgCtgGt44AY.260.000113
ORF1ab/nsp2361A361TGctAct44AY.430.000018
ORF1ab/nsp2361A361delGCT---44B.1.1.330.001684
ORF1ab/nsp2361A361delGCT---44B.1.1770.000053
ORF1ab/nsp2361A361AgcTgcG44B.1.36.290.002069
ORF1ab/nsp2361A361AgcTgcC44B.1.5960.000349
ORF1ab/nsp2361A361AgcTgcC44P.10.000063
ORF1ab/nsp2361A361VgCtgTt44P.10.000063
ORF1ab/nsp2361A361TGctAct33AY.30.00003
ORF1ab/nsp2361A361GgCtgGt33AY.40.000005
ORF1ab/nsp2361A361VgCtgTt33AY.4.20.000065
ORF1ab/nsp2361A361VgCtgTt33AY.4.2.10.000447
ORF1ab/nsp2361A361AgcTgcG23AY.440.000012
ORF1ab/nsp2361A361AgcTgcC13AY.440.000006
ORF1ab/nsp2361A361VgCtgTt33AY.470.000093
ORF1ab/nsp2361A361AgcTgcC33AY.50.000062
ORF1ab/nsp2361A361AgcTgcG33AY.99.20.000276
ORF1ab/nsp2361A361PGctCct33B.10.000027
ORF1ab/nsp2361A361delGCT---33B.1.1.3480.002389
ORF1ab/nsp2361A361TGctAct33B.1.177.40.000633
ORF1ab/nsp2361A361TGctAct33B.1.177.580.003995
ORF1ab/nsp2361A361SGctTct33B.1.177.600.000655
ORF1ab/nsp2361A361VgCtgTt33B.1.4290.000071
ORF1ab/nsp2361A361VgCtgTt33B.1.438.10.000322
ORF1ab/nsp2361A361VgCtgTt33B.1.5260.000071
ORF1ab/nsp2361A361VgCtgTt33B.1.5640.001278
ORF1ab/nsp2361A361VgCtgTt33B.1.5960.000261
ORF1ab/nsp2361A361VgCtgTt33B.30.002492
ORF1ab/nsp2361A361VgCtgTt33B.400.001093
ORF1ab/nsp2361A361GgCTgGA120.055556
ORF1ab/nsp2361A361GgCtgGt120.055556
ORF1ab/nsp2361A361VgCtgTt22A.10.000564
ORF1ab/nsp2361A361del1gCtg-t12All0
ORF1ab/nsp2361A361del1Gct-ct12All0
ORF1ab/nsp2361A361AgcTgcC22AY.1020.000053
ORF1ab/nsp2361A361AgcTgcC12AY.1030.000006
ORF1ab/nsp2361A361AgcTgcA12AY.1030.000006
ORF1ab/nsp2361A361VgCtgTt22AY.140.000176
ORF1ab/nsp2361A361SGctTct22AY.250.000012
ORF1ab/nsp2361A361VgCtgTt22AY.290.000032
ORF1ab/nsp2361A361AgcTgcC22AY.330.000134
ORF1ab/nsp2361A361TGctAct22AY.340.000194
ORF1ab/nsp2361A361VgCtgTt22AY.340.000194
ORF1ab/nsp2361A361delGCT---22AY.4.50.000215
ORF1ab/nsp2361A361VgCtgTt22AY.4.50.000215
ORF1ab/nsp2361A361AgcTgcC22AY.750.000112
ORF1ab/nsp2361A361VgCtgTt22AY.790.002421
ORF1ab/nsp2361A361TGctAct22B.1.1.280.000622
ORF1ab/nsp2361A361VgCtgTt22B.1.1.3070.005063
ORF1ab/nsp2361A361VgCtgTt22B.1.1.5170.013605
ORF1ab/nsp2361A361TGctAct22B.1.1.5190.000079
ORF1ab/nsp2361A361PGctCct22B.1.1.70.000002
ORF1ab/nsp2361A361TGctAct22B.1.1770.000026
ORF1ab/nsp2361A361VgCtgTt22B.1.177.350.001382
ORF1ab/nsp2361A361SGctTct22B.1.20.000018
ORF1ab/nsp2361A361SGctTct22B.1.4160.002538
ORF1ab/nsp2361A361AgcTgcA12B.1.4290.000024
ORF1ab/nsp2361A361AgcTgcC12B.1.4290.000024
ORF1ab/nsp2361A361AgcTgcC22B.1.466.20.000782
ORF1ab/nsp2361A361TGctAct22B.1.5960.000174
ORF1ab/nsp2361A361VgCtgTt22B.1.6210.000177
ORF1ab/nsp2361A361AgcTgcC22D.20.00015
ORF1ab/nsp2361A361delGCT---22N.60.014184
ORF1ab/nsp2361A361SGctTct22P.10.000032
ORF1ab/nsp2361A361TGctAct22P.1.130.001797
ORF1ab/nsp2361A361delGCT---22P.20.000373
ORF1ab/nsp2361A361TGctAct22P.20.000373
ORF1ab/nsp2361A361AgcTgcC22Q.80.00033
ORF1ab/nsp2361A361AgcTgcA110.055556
ORF1ab/nsp2361A361SGctTct110.055556
ORF1ab/nsp2361A361VgCtgTt11A.2.50.000499
ORF1ab/nsp2361A361FGCtTTt11All0
ORF1ab/nsp2361A361RGCtCGt11All0
ORF1ab/nsp2361A361del2GCt--t11All0
ORF1ab/nsp2361A361VgCtgTt11AU.20.002421
ORF1ab/nsp2361A361TGctAct11AY.1020.000027
ORF1ab/nsp2361A361SGctTct11AY.1030.000006
ORF1ab/nsp2361A361SGctTct11AY.1040.001984
ORF1ab/nsp2361A361delGCT---11AY.1110.000183
ORF1ab/nsp2361A361AgcTgcC11AY.116.10.000311
ORF1ab/nsp2361A361TGctAct11AY.1170.000085
ORF1ab/nsp2361A361VgCtgTt11AY.1170.000085
ORF1ab/nsp2361A361SGctTct11AY.1190.000035
ORF1ab/nsp2361A361TGctAct11AY.1190.000035
ORF1ab/nsp2361A361VgCtgTt11AY.1190.000035
ORF1ab/nsp2361A361AgcTgcC11AY.120.000316
ORF1ab/nsp2361A361VgCtgTt11AY.130.000161
ORF1ab/nsp2361A361SGctTct11AY.16.10.00047
ORF1ab/nsp2361A361VgCtgTt11AY.20.000356
ORF1ab/nsp2361A361TGctAct11AY.230.00007
ORF1ab/nsp2361A361DgCtgAt11AY.250.000006
ORF1ab/nsp2361A361delGCT---11AY.250.000006
ORF1ab/nsp2361A361del1gCtg-t11AY.250.000006
ORF1ab/nsp2361A361DgCtgAt11AY.260.000028
ORF1ab/nsp2361A361VgCtgTt11AY.270.000065
ORF1ab/nsp2361A361AgcTgcC11AY.280.00189
ORF1ab/nsp2361A361TGctAct11AY.290.000016
ORF1ab/nsp2361A361AgcTgcC11AY.290.000016
ORF1ab/nsp2361A361VgCtgTt11AY.29.10.000221
ORF1ab/nsp2361A361SGctTct11AY.30.00001
ORF1ab/nsp2361A361VgCtgTt11AY.300.000396
ORF1ab/nsp2361A361AgcTgcC11AY.320.000532
ORF1ab/nsp2361A361VgCtgTt11AY.320.000532
ORF1ab/nsp2361A361VgCtgTt11AY.360.000148
ORF1ab/nsp2361A361delGCT---11AY.40.000002
ORF1ab/nsp2361A361DgCtgAt11AY.40.000002
ORF1ab/nsp2361A361VgCtgTt11AY.4.10.000737
ORF1ab/nsp2361A361AgcTgcC11AY.4.2.10.000149
ORF1ab/nsp2361A361del1Gct-ct11AY.430.000004
ORF1ab/nsp2361A361SGctTct11AY.440.000006
ORF1ab/nsp2361A361DgCtgAt11AY.440.000006
ORF1ab/nsp2361A361AgcTgcC11AY.450.000122
ORF1ab/nsp2361A361VgCtgTt11AY.450.000122
ORF1ab/nsp2361A361TGctAct11AY.450.000122
ORF1ab/nsp2361A361SGctTct11AY.460.000104
ORF1ab/nsp2361A361VgCtgTt11AY.46.10.001027
ORF1ab/nsp2361A361AgcTgcC11AY.46.60.000072
ORF1ab/nsp2361A361TGctAct11AY.470.000031
ORF1ab/nsp2361A361DgCtgAt11AY.470.000031
ORF1ab/nsp2361A361SGctTct11AY.470.000031
ORF1ab/nsp2361A361AgcTgcC11AY.520.000814
ORF1ab/nsp2361A361VgCtgTt11AY.550.000917
ORF1ab/nsp2361A361TGctAct11AY.570.000656
ORF1ab/nsp2361A361delGCT---11AY.660.00107
ORF1ab/nsp2361A361SGctTct11AY.70.000196
ORF1ab/nsp2361A361VgCtgTt11AY.750.000056
ORF1ab/nsp2361A361TGctAct11AY.75.10.00018
ORF1ab/nsp2361A361TGctAct11AY.810.001992
ORF1ab/nsp2361A361TGctAct11AY.860.00083
ORF1ab/nsp2361A361SGctTct11AY.9.10.000084
ORF1ab/nsp2361A361delGCT---11AY.910.00073
ORF1ab/nsp2361A361AgcTgcC11AY.980.000079
ORF1ab/nsp2361A361TGctAct11AY.980.000079
ORF1ab/nsp2361A361VgCtgTt11B0.000128
ORF1ab/nsp2361A361SGctTct11B.1.10.000018
ORF1ab/nsp2361A361PGctCct11B.1.10.000018
ORF1ab/nsp2361A361VgCtgTt11B.1.1.10.000327
ORF1ab/nsp2361A361VgCtgTt11B.1.1.1610.003534
ORF1ab/nsp2361A361TGctAct11B.1.1.1800.010753
ORF1ab/nsp2361A361AgcTgcC11B.1.1.1860.003436
ORF1ab/nsp2361A361VgCtgTt11B.1.1.2140.000055
ORF1ab/nsp2361A361AgcTgcC11B.1.1.2160.00089
ORF1ab/nsp2361A361VgCtgTt11B.1.1.2190.005
ORF1ab/nsp2361A361delGCT---11B.1.1.2840.000107
ORF1ab/nsp2361A361TGctAct11B.1.1.3510.002793
ORF1ab/nsp2361A361AgcTgcC11B.1.1.3650.005587
ORF1ab/nsp2361A361SGctTct11B.1.1.3720.000689
ORF1ab/nsp2361A361VgCtgTt11B.1.1.4340.000349
ORF1ab/nsp2361A361DgCtgAt11B.1.1.4480.002033
ORF1ab/nsp2361A361VgCtgTt11B.1.1.5230.001563
ORF1ab/nsp2361A361DgCtgAt11B.1.1.70.000001
ORF1ab/nsp2361A361del2GCt--t11B.1.1.70.000001
ORF1ab/nsp2361A361AgcTgcC11B.1.1.80.003584
ORF1ab/nsp2361A361VgCtgTt11B.1.1.830.00271
ORF1ab/nsp2361A361TGctAct11B.1.1600.000031
ORF1ab/nsp2361A361SGctTct11B.1.160.120.00641
ORF1ab/nsp2361A361VgCtgTt11B.1.160.310.008065
ORF1ab/nsp2361A361VgCtgTt11B.1.1700.00431
ORF1ab/nsp2361A361delGCT---11B.1.177.540.000606
ORF1ab/nsp2361A361VgCtgTt11B.1.177.540.000606
ORF1ab/nsp2361A361PGctCct11B.1.20.000009
ORF1ab/nsp2361A361SGctTct11B.1.2210.000071
ORF1ab/nsp2361A361AgcTgcG11B.1.2210.000071
ORF1ab/nsp2361A361FGCtTTt11B.1.2210.000071
ORF1ab/nsp2361A361TGctAct11B.1.2210.000071
ORF1ab/nsp2361A361VgCtgTt11B.1.2210.000071
ORF1ab/nsp2361A361AgcTgcC11B.1.221.10.002907
ORF1ab/nsp2361A361VgCtgTt11B.1.2340.000132
ORF1ab/nsp2361A361VgCtgTt11B.1.2390.001221
ORF1ab/nsp2361A361VgCtgTt11B.1.2430.00007
ORF1ab/nsp2361A361SGctTct11B.1.2430.00007
ORF1ab/nsp2361A361TGctAct11B.1.258.170.000104
ORF1ab/nsp2361A361AgcTgcG11B.1.3050.002151
ORF1ab/nsp2361A361TGctAct11B.1.3460.001311
ORF1ab/nsp2361A361VgCtgTt11B.1.3490.000715
ORF1ab/nsp2361A361AgcTgcC11B.1.3510.00003
ORF1ab/nsp2361A361VgCtgTt11B.1.351.20.000303
ORF1ab/nsp2361A361TGctAct11B.1.360.000146
ORF1ab/nsp2361A361delGCT---11B.1.360.000146
ORF1ab/nsp2361A361VgCtgTt11B.1.36.290.000517
ORF1ab/nsp2361A361VgCtgTt11B.1.36.80.001
ORF1ab/nsp2361A361TGctAct11B.1.3670.000792
ORF1ab/nsp2361A361VgCtgTt11B.1.3960.000706
ORF1ab/nsp2361A361GgCtgGt11B.1.4270.00005
ORF1ab/nsp2361A361SGctTct11B.1.4270.00005
ORF1ab/nsp2361A361SGctTct11B.1.4290.000024
ORF1ab/nsp2361A361delGCT---11B.1.4390.005917
ORF1ab/nsp2361A361SGctTct11B.1.4560.003268
ORF1ab/nsp2361A361RGCtCGt11B.1.5250.000113
ORF1ab/nsp2361A361GgCTgGC11B.1.5250.000113
ORF1ab/nsp2361A361AgcTgcC11B.1.5260.000024
ORF1ab/nsp2361A361TGctAct11B.1.5260.000024
ORF1ab/nsp2361A361VgCtgTt11B.1.5650.00081
ORF1ab/nsp2361A361AgcTgcC11B.1.5750.000303
ORF1ab/nsp2361A361VgCtgTt11B.1.5820.000491
ORF1ab/nsp2361A361VgCtgTt11B.1.5910.010638
ORF1ab/nsp2361A361SGctTct11B.1.5960.000087
ORF1ab/nsp2361A361SGctTct11B.1.6090.000479
ORF1ab/nsp2361A361VgCtgTt11B.1.617.10.000129
ORF1ab/nsp2361A361DgCtgAt11B.1.617.20.000004
ORF1ab/nsp2361A361SGctTct11B.1.619.10.000641
ORF1ab/nsp2361A361TGctAct11B.1.621.10.000506
ORF1ab/nsp2361A361PGctCct11B.1.6370.000073
ORF1ab/nsp2361A361AgcTgcC11B.40.002208
ORF1ab/nsp2361A361VgCtgTt11B.6.60.000889
ORF1ab/nsp2361A361TGctAct11C.36.30.000567
ORF1ab/nsp2361A361VgCtgTt11C.36.30.000567
ORF1ab/nsp2361A361VgCtgTt11C.370.000116
ORF1ab/nsp2361A361GgCtgGt11D.20.000075
ORF1ab/nsp2361A361PGctCct11P.10.000016
ORF1ab/nsp2361A361TGctAct11P.10.000016
ORF1ab/nsp2361A361PGctCct11P.1.100.000269
ORF1ab/nsp2361A361delGCT---11Q.10.000126
ORF1ab/nsp2361A361VgCtgTt11Q.30.000145
ORF1ab/nsp2361A361VgCtgTt11Q.80.000165
ORF1ab/nsp2361A361VgCtgTt11R.10.00009