CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 358

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2358S358AS538AnonsynTcaGca12050120490.9999171877-1879
ORF1ab/nsp2358S358AS538AnonsynTcAGcG1205010.00008298751877-1879
ORF1ab/nsp2358S358LS538LnonsyntCatTa335633520.9988081877-1879
ORF1ab/nsp2358S358LS538LnonsynTCaCTa335620.0005959481877-1879
ORF1ab/nsp2358S358LS538LnonsyntCAtTG335610.0002979741877-1879
ORF1ab/nsp2358S358LS538LnonsynTCACTG335610.0002979741877-1879
ORF1ab/nsp2358S358PS538PnonsynTcaCca8608560.9953491877-1879
ORF1ab/nsp2358S358PS538PnonsynTcACcG86040.004651161877-1879
ORF1ab/nsp2358S358SS538SsyntcAtcG5894810.8166381877-1879
ORF1ab/nsp2358S358SS538SsyntcAtcT5891040.176571877-1879
ORF1ab/nsp2358S358SS538SsyntcAtcC58940.006791171877-1879
ORF1ab/nsp2358S358delS538deldelTCA---454511877-1879
ORF1ab/nsp2358S358TS538TnonsynTcaAca393911877-1879
ORF1ab/nsp2358S358XS538XnonsyntCatAa9911877-1879
ORF1ab/nsp2358S358del2S538del2delTCa--a430.751877-1879
ORF1ab/nsp2358S358del2S538del2delTCAC--410.251877-1879
ORF1ab/nsp2358S358VS538VnonsynTCaGTa3311877-1879
ORF1ab/nsp2358S358del1S538del1deltcAtc-320.6666671877-1879
ORF1ab/nsp2358S358del1S538del1delTca-ca310.3333331877-1879
ORF1ab/nsp2358S358ES538EnonsynTCAGAG2211877-1879
ORF1ab/nsp2358S358FS538FnonsyntCAtTT1111877-1879

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2358S358ATcaGca1204912050All0.002305
ORF1ab/nsp2358S358ATcAGcG112050All0
ORF1ab/nsp2358S358ATcaGca1101211013AY.140.969196
ORF1ab/nsp2358S358ATcAGcG111013AY.140.000088
ORF1ab/nsp2358S358LtCatTa33523356All0.000641
ORF1ab/nsp2358S358LTCaCTa23356All0
ORF1ab/nsp2358S358LtCAtTG13356All0
ORF1ab/nsp2358S358LTCACTG13356All0
ORF1ab/nsp2358S358PTcaCca856860All0.000164
ORF1ab/nsp2358S358PTcACcG4860All0.000001
ORF1ab/nsp2358S358StcAtcG481589All0.000092
ORF1ab/nsp2358S358StcAtcT104589All0.00002
ORF1ab/nsp2358S358StcAtcC4589All0.000001
ORF1ab/nsp2358S358LtCatTa559560B.1.1.70.0005
ORF1ab/nsp2358S358LtCAtTG1560B.1.1.70.000001
ORF1ab/nsp2358S358LtCatTa545545P.10.008586
ORF1ab/nsp2358S358LtCatTa335335AY.980.026463
ORF1ab/nsp2358S358PTcaCca287287AY.1030.001782
ORF1ab/nsp2358S358LtCatTa284284B.1.617.20.001069
ORF1ab/nsp2358S358ATcaGca280280B.1.617.20.001054
ORF1ab/nsp2358S358LtCatTa202202AY.110.270415
ORF1ab/nsp2358S358StcAtcG150183B.1.1.70.000134
ORF1ab/nsp2358S358StcAtcT33183B.1.1.70.00003
ORF1ab/nsp2358S358LtCatTa178178AY.40.000277
ORF1ab/nsp2358S358PTcaCca145147B.1.617.20.000546
ORF1ab/nsp2358S358PTcACcG2147B.1.617.20.000008
ORF1ab/nsp2358S358ATcaGca138138AY.540.013158
ORF1ab/nsp2358S358LtCatTa9191B.1.1.3180.027459
ORF1ab/nsp2358S358StcAtcG8486AY.40.000131
ORF1ab/nsp2358S358StcAtcC286AY.40.000003
ORF1ab/nsp2358S358ATcaGca7474AY.190.084379
ORF1ab/nsp2358S358LtCatTa6767B.1.10.001215
ORF1ab/nsp2358S358ATcaGca6565AY.380.032451
ORF1ab/nsp2358S358LtCatTa6262AY.250.000373
ORF1ab/nsp2358S358LtCatTa5759AY.1030.000354
ORF1ab/nsp2358S358LTCaCTa259AY.1030.000012
ORF1ab/nsp2358S358PTcaCca5758AY.430.000253
ORF1ab/nsp2358S358PTcACcG158AY.430.000004
ORF1ab/nsp2358S358LtCatTa5757B.10.000522
ORF1ab/nsp2358S358PTcaCca5353AY.440.000323
ORF1ab/nsp2358S358LtCatTa5253AY.440.000317
ORF1ab/nsp2358S358LTCACTG153AY.440.000006
ORF1ab/nsp2358S358LtCatTa5151B.1.177.40.010764
ORF1ab/nsp2358S358LtCatTa4747AY.430.000208
ORF1ab/nsp2358S358ATcaGca4646AY.980.003634
ORF1ab/nsp2358S358delTCA---4545All0.000009
ORF1ab/nsp2358S358LtCatTa4444AY.1020.001167
ORF1ab/nsp2358S358ATcaGca4040AY.130.006439
ORF1ab/nsp2358S358PTcaCca4040B.1.1.70.000036
ORF1ab/nsp2358S358PTcaCca4040B.1.20.000352
ORF1ab/nsp2358S358TTcaAca3939All0.000007
ORF1ab/nsp2358S358ATcaGca3939AY.640.023214
ORF1ab/nsp2358S358StcAtcG3639B.1.617.20.000136
ORF1ab/nsp2358S358StcAtcT339B.1.617.20.000011
ORF1ab/nsp2358S358StcAtcT3737P.10.000583
ORF1ab/nsp2358S358PTcaCca3434B.1.1600.00106
ORF1ab/nsp2358S358LtCatTa3434B.1.20.000299
ORF1ab/nsp2358S358StcAtcG3233AY.430.000142
ORF1ab/nsp2358S358StcAtcT133AY.430.000004
ORF1ab/nsp2358S358ATcaGca3232AY.440.000195
ORF1ab/nsp2358S358LtCatTa3232B.1.1770.000421
ORF1ab/nsp2358S358LtCatTa3131B.1.36.160.04416
ORF1ab/nsp2358S358LtCatTa2929AY.920.008331
ORF1ab/nsp2358S358LtCatTa2525B.1.1.3170.010292
ORF1ab/nsp2358S358StcAtcG2323AY.200.000894
ORF1ab/nsp2358S358PTcaCca2222AY.40.000034
ORF1ab/nsp2358S358ATcaGca2222AY.430.000097
ORF1ab/nsp2358S358TTcaAca2222B.1.1.10.007187
ORF1ab/nsp2358S358LtCatTa2020AY.60.000823
ORF1ab/nsp2358S358PTcaCca1919B.1.1.5190.000755
ORF1ab/nsp2358S358ATcaGca1717AY.620.007407
ORF1ab/nsp2358S358LtCatTa1616AY.390.000395
ORF1ab/nsp2358S358StcAtcT916B.1.20.000079
ORF1ab/nsp2358S358StcAtcG716B.1.20.000062
ORF1ab/nsp2358S358StcAtcG1515Q.20.009202
ORF1ab/nsp2358S358LtCatTa1414AY.30.000139
ORF1ab/nsp2358S358ATcaGca1414AY.480.006512
ORF1ab/nsp2358S358ATcaGca1313AY.510.011818
ORF1ab/nsp2358S358ATcaGca1313AY.650.00693
ORF1ab/nsp2358S358ATcaGca1313AY.780.020031
ORF1ab/nsp2358S358LtCatTa1313B.1.4290.000306
ORF1ab/nsp2358S358LtCatTa1313P.1.150.00302
ORF1ab/nsp2358S358LtCatTa1313R.10.00117
ORF1ab/nsp2358S358LtCatTa1212AY.290.000189
ORF1ab/nsp2358S358LtCatTa1212AY.540.001144
ORF1ab/nsp2358S358delTCA---1212B.1.1.70.000011
ORF1ab/nsp2358S358LtCatTa1212B.1.1600.000374
ORF1ab/nsp2358S358LtCatTa1212B.1.258.140.011765
ORF1ab/nsp2358S358LtCatTa1212B.1.5260.000282
ORF1ab/nsp2358S358LtCatTa1111AY.50.000227
ORF1ab/nsp2358S358LtCatTa1111B.1.177.600.002403
ORF1ab/nsp2358S358LtCatTa1111C.370.001277
ORF1ab/nsp2358S358LtCatTa1111P.1.140.000526
ORF1ab/nsp2358S358PTcaCca1010AY.30.000099
ORF1ab/nsp2358S358PTcaCca1010AY.420.000402
ORF1ab/nsp2358S358ATcaGca1010AY.750.00056
ORF1ab/nsp2358S358ATcaGca1010AY.75.10.001803
ORF1ab/nsp2358S358PTcaCca1010AY.99.20.000922
ORF1ab/nsp2358S358PTcaCca1010B.10.000092
ORF1ab/nsp2358S358LtCatTa1010B.1.1.2840.001074
ORF1ab/nsp2358S358LtCatTa1010B.1.177.860.001835
ORF1ab/nsp2358S358XtCatAa99All0.000002
ORF1ab/nsp2358S358StcAtcG89AY.1020.000212
ORF1ab/nsp2358S358StcAtcT19AY.1020.000027
ORF1ab/nsp2358S358LtCatTa99AY.1190.000318
ORF1ab/nsp2358S358ATcaGca99AY.250.000054
ORF1ab/nsp2358S358LtCatTa99AY.260.000255
ORF1ab/nsp2358S358PTcaCca99AY.290.000142
ORF1ab/nsp2358S358LtCatTa99B.1.2210.000639
ORF1ab/nsp2358S358StcAtcG99B.1.2580.000599
ORF1ab/nsp2358S358PTcaCca99P.10.000142
ORF1ab/nsp2358S358LtCatTa99P.1.120.004356
ORF1ab/nsp2358S358ATcaGca88AY.16.10.003759
ORF1ab/nsp2358S358StcAtcT78AY.390.000173
ORF1ab/nsp2358S358StcAtcG18AY.390.000025
ORF1ab/nsp2358S358LtCatTa88AY.90.000541
ORF1ab/nsp2358S358LtCatTa88AZ.30.012158
ORF1ab/nsp2358S358ATcaGca88B.1.1.3750.095238
ORF1ab/nsp2358S358LtCatTa88B.1.5250.000905
ORF1ab/nsp2358S358StcAtcG57AY.1030.000031
ORF1ab/nsp2358S358StcAtcT27AY.1030.000012
ORF1ab/nsp2358S358LtCatTa77AY.330.000467
ORF1ab/nsp2358S358LtCatTa77AY.4.20.000152
ORF1ab/nsp2358S358ATcaGca77AY.470.000218
ORF1ab/nsp2358S358ATcaGca77AY.520.0057
ORF1ab/nsp2358S358PTcaCca77AY.590.003708
ORF1ab/nsp2358S358ATcaGca77AY.610.000733
ORF1ab/nsp2358S358ATcaGca77B.10.000064
ORF1ab/nsp2358S358LtCatTa77B.1.1.5190.000278
ORF1ab/nsp2358S358LtCatTa77B.1.360.001021
ORF1ab/nsp2358S358LtCatTa66AY.1000.000276
ORF1ab/nsp2358S358ATcaGca66AY.1020.000159
ORF1ab/nsp2358S358ATcaGca66AY.1030.000037
ORF1ab/nsp2358S358LtCatTa66AY.1200.000223
ORF1ab/nsp2358S358ATcaGca66AY.230.000418
ORF1ab/nsp2358S358ATcaGca66AY.30.00006
ORF1ab/nsp2358S358ATcaGca66AY.330.000401
ORF1ab/nsp2358S358ATcaGca66AY.40.000009
ORF1ab/nsp2358S358StcAtcG66AY.440.000037
ORF1ab/nsp2358S358LtCatTa66AY.46.60.000433
ORF1ab/nsp2358S358ATcaGca66AY.490.019169
ORF1ab/nsp2358S358ATcaGca66AY.680.001642
ORF1ab/nsp2358S358LtCatTa66B.1.1.2280.018293
ORF1ab/nsp2358S358ATcaGca66B.1.1.70.000005
ORF1ab/nsp2358S358LtCatTa66B.1.4270.000303
ORF1ab/nsp2358S358StcAtcG66B.1.4990.006303
ORF1ab/nsp2358S358StcAtcG66B.1.5260.000141
ORF1ab/nsp2358S358PTcaCca55AY.1020.000133
ORF1ab/nsp2358S358LtCatTa55AY.1180.000313
ORF1ab/nsp2358S358PTcaCca55AY.250.00003
ORF1ab/nsp2358S358StcAtcG55AY.39.10.000198
ORF1ab/nsp2358S358PTcaCca55AY.4.20.000108
ORF1ab/nsp2358S358LtCatTa55AY.4.50.000537
ORF1ab/nsp2358S358LtCatTa55AY.470.000156
ORF1ab/nsp2358S358ATcaGca55AY.770.005637
ORF1ab/nsp2358S358ATcaGca55AY.810.00996
ORF1ab/nsp2358S358LtCatTa55AY.98.10.000242
ORF1ab/nsp2358S358ATcaGca55AY.98.10.000242
ORF1ab/nsp2358S358LtCatTa55B.1.1.3160.004625
ORF1ab/nsp2358S358StcAtcG55B.1.1600.000156
ORF1ab/nsp2358S358LtCatTa55B.1.177.210.000382
ORF1ab/nsp2358S358LtCatTa55B.1.3890.00501
ORF1ab/nsp2358S358del2TCa--a34All0.000001
ORF1ab/nsp2358S358del2TCAC--14All0
ORF1ab/nsp2358S358LtCatTa44AY.1050.002572
ORF1ab/nsp2358S358StcAtcG44AY.1130.00057
ORF1ab/nsp2358S358LtCatTa44AY.1140.000924
ORF1ab/nsp2358S358ATcaGca44AY.1170.000338
ORF1ab/nsp2358S358LtCatTa44AY.230.000279
ORF1ab/nsp2358S358StcAtcG44AY.290.000063
ORF1ab/nsp2358S358StcAtcG44AY.30.00004
ORF1ab/nsp2358S358StcAtcG44AY.360.000593
ORF1ab/nsp2358S358ATcaGca44AY.500.003197
ORF1ab/nsp2358S358ATcaGca44AY.590.002119
ORF1ab/nsp2358S358LtCatTa44AY.840.00175
ORF1ab/nsp2358S358ATcaGca44AY.9.20.000147
ORF1ab/nsp2358S358LtCatTa44B.1.1.1630.030534
ORF1ab/nsp2358S358LtCatTa44B.1.1.2160.003562
ORF1ab/nsp2358S358delTCA---44B.1.1.330.001684
ORF1ab/nsp2358S358LtCatTa44B.1.1.3970.009009
ORF1ab/nsp2358S358LtCatTa44B.1.1.700.001364
ORF1ab/nsp2358S358StcAtcG44B.1.110.30.002874
ORF1ab/nsp2358S358PTcaCca44B.1.1640.059701
ORF1ab/nsp2358S358delTCA---44B.1.1770.000053
ORF1ab/nsp2358S358LtCatTa44B.1.177.350.002764
ORF1ab/nsp2358S358LtCatTa44B.1.438.10.000429
ORF1ab/nsp2358S358LtCatTa44C.36.30.002269
ORF1ab/nsp2358S358LtCatTa44Q.10.000505
ORF1ab/nsp2358S358LtCatTa33A.2.20.005068
ORF1ab/nsp2358S358VTCaGTa33All0.000001
ORF1ab/nsp2358S358del1tcAtc-23All0
ORF1ab/nsp2358S358del1Tca-ca13All0
ORF1ab/nsp2358S358LtCatTa33AU.10.003797
ORF1ab/nsp2358S358PTcaCca33AU.30.006329
ORF1ab/nsp2358S358StcAtcG33AY.1000.000138
ORF1ab/nsp2358S358PTcaCca33AY.1180.000188
ORF1ab/nsp2358S358VTCaGTa33AY.140.000264
ORF1ab/nsp2358S358LtCatTa33AY.200.000117
ORF1ab/nsp2358S358StcAtcG33AY.230.000209
ORF1ab/nsp2358S358StcAtcG13AY.250.000006
ORF1ab/nsp2358S358StcAtcT13AY.250.000006
ORF1ab/nsp2358S358StcAtcC13AY.250.000006
ORF1ab/nsp2358S358ATcaGca33AY.390.000074
ORF1ab/nsp2358S358LtCatTa33AY.39.10.000119
ORF1ab/nsp2358S358LtCatTa33AY.46.40.000494
ORF1ab/nsp2358S358StcAtcG33AY.50.000062
ORF1ab/nsp2358S358ATcaGca33AY.560.004815
ORF1ab/nsp2358S358ATcaGca33AY.660.003209
ORF1ab/nsp2358S358PTcaCca33AY.850.001282
ORF1ab/nsp2358S358ATcaGca33AY.860.00249
ORF1ab/nsp2358S358ATcaGca33AY.870.002498
ORF1ab/nsp2358S358ATcaGca33AY.90.000203
ORF1ab/nsp2358S358LtCatTa33B.1.1.10.00098
ORF1ab/nsp2358S358delTCA---33B.1.1.3480.002389
ORF1ab/nsp2358S358LtCatTa33B.1.1.3980.009677
ORF1ab/nsp2358S358LtCatTa33B.1.1.500.002037
ORF1ab/nsp2358S358TTcaAca33B.1.1770.00004
ORF1ab/nsp2358S358StcAtcG33B.1.177.210.000229
ORF1ab/nsp2358S358LtCatTa33B.1.3610.003866
ORF1ab/nsp2358S358PTcaCca33B.1.4290.000071
ORF1ab/nsp2358S358StcAtcG33B.1.466.20.001174
ORF1ab/nsp2358S358delTCA---33B.1.5250.000339
ORF1ab/nsp2358S358PTcaCca33P.1.140.000143
ORF1ab/nsp2358S358LtCatTa22A.10.000564
ORF1ab/nsp2358S358ETCAGAG22All0
ORF1ab/nsp2358S358ATcaGca22AY.100.00106
ORF1ab/nsp2358S358ATcaGca22AY.1140.000462
ORF1ab/nsp2358S358StcAtcG22AY.1180.000125
ORF1ab/nsp2358S358PTcaCca22AY.1190.000071
ORF1ab/nsp2358S358PTcaCca22AY.1200.000074
ORF1ab/nsp2358S358LtCatTa22AY.160.000759
ORF1ab/nsp2358S358ATcaGca22AY.160.000759
ORF1ab/nsp2358S358PTcaCca22AY.200.000078
ORF1ab/nsp2358S358ATcaGca22AY.240.000862
ORF1ab/nsp2358S358PTcaCca22AY.260.000057
ORF1ab/nsp2358S358LtCatTa22AY.270.000129
ORF1ab/nsp2358S358LtCatTa22AY.29.10.000441
ORF1ab/nsp2358S358StcAtcG12AY.3.10.000085
ORF1ab/nsp2358S358StcAtcT12AY.3.10.000085
ORF1ab/nsp2358S358ATcaGca22AY.300.000791
ORF1ab/nsp2358S358PTcaCca22AY.320.001065
ORF1ab/nsp2358S358PTcaCca22AY.390.000049
ORF1ab/nsp2358S358delTCA---22AY.40.000003
ORF1ab/nsp2358S358StcAtcC12AY.4.20.000022
ORF1ab/nsp2358S358StcAtcG12AY.4.20.000022
ORF1ab/nsp2358S358StcAtcT22AY.4.40.000818
ORF1ab/nsp2358S358delTCA---22AY.4.50.000215
ORF1ab/nsp2358S358LtCatTa22AY.420.00008
ORF1ab/nsp2358S358TTcaAca22AY.440.000012
ORF1ab/nsp2358S358LtCatTa22AY.450.000243
ORF1ab/nsp2358S358ATcaGca22AY.460.000208
ORF1ab/nsp2358S358StcAtcG22AY.470.000062
ORF1ab/nsp2358S358ATcaGca22AY.5.40.000553
ORF1ab/nsp2358S358LtCatTa22AY.550.001835
ORF1ab/nsp2358S358PTcaCca22AY.640.00119
ORF1ab/nsp2358S358LtCatTa22AY.70.000392
ORF1ab/nsp2358S358ATcaGca22AY.710.00095
ORF1ab/nsp2358S358LtCatTa22AY.750.000112
ORF1ab/nsp2358S358ATcaGca22AY.850.000854
ORF1ab/nsp2358S358StcAtcG22AY.880.001768
ORF1ab/nsp2358S358XtCatAa22AY.9.20.000073
ORF1ab/nsp2358S358LtCatTa22AY.9.2.10.003953
ORF1ab/nsp2358S358StcAtcG22AY.98.10.000097
ORF1ab/nsp2358S358LtCatTa22AY.99.20.000184
ORF1ab/nsp2358S358XtCatAa22B.10.000018
ORF1ab/nsp2358S358TTcaAca22B.10.000018
ORF1ab/nsp2358S358LtCatTa22B.1.1.3060.000877
ORF1ab/nsp2358S358ATcaGca22B.1.1.3170.000823
ORF1ab/nsp2358S358ATcaGca22B.1.1.3720.001377
ORF1ab/nsp2358S358LtCatTa22B.1.1.5180.012658
ORF1ab/nsp2358S358XtCatAa22B.1.1.70.000002
ORF1ab/nsp2358S358LtCatTa22B.1.140.035088
ORF1ab/nsp2358S358LtCatTa22B.1.177.120.000303
ORF1ab/nsp2358S358ATcaGca22B.1.177.180.00232
ORF1ab/nsp2358S358LtCatTa22B.1.177.420.001789
ORF1ab/nsp2358S358LtCatTa22B.1.177.820.000955
ORF1ab/nsp2358S358ATcaGca22B.1.20.000018
ORF1ab/nsp2358S358StcAtcG12B.1.2210.000071
ORF1ab/nsp2358S358StcAtcT12B.1.2210.000071
ORF1ab/nsp2358S358PTcaCca22B.1.2430.000139
ORF1ab/nsp2358S358LtCatTa22B.1.2430.000139
ORF1ab/nsp2358S358LtCatTa22B.1.2580.000133
ORF1ab/nsp2358S358PTcaCca22B.1.2580.000133
ORF1ab/nsp2358S358LtCatTa22B.1.3200.002491
ORF1ab/nsp2358S358PTcaCca22B.1.351.20.000605
ORF1ab/nsp2358S358PTcaCca22B.1.360.000292
ORF1ab/nsp2358S358LtCatTa22B.1.36.190.018519
ORF1ab/nsp2358S358LtCatTa22B.1.36.290.001035
ORF1ab/nsp2358S358LtCatTa22B.1.3850.021277
ORF1ab/nsp2358S358PTcaCca22B.1.4270.000101
ORF1ab/nsp2358S358StcAtcG22B.1.4290.000047
ORF1ab/nsp2358S358del2TCa--a22B.1.5250.000226
ORF1ab/nsp2358S358ETCAGAG22B.1.5250.000226
ORF1ab/nsp2358S358PTcaCca22B.1.5260.000047
ORF1ab/nsp2358S358LtCatTa22B.1.6370.000146
ORF1ab/nsp2358S358PTcaCca22B.1.6370.000146
ORF1ab/nsp2358S358StcAtcG22B.290.007018
ORF1ab/nsp2358S358LtCatTa22C.140.008658
ORF1ab/nsp2358S358StcAtcG22C.2.10.013333
ORF1ab/nsp2358S358delTCA---22N.60.014184
ORF1ab/nsp2358S358StcAtcG22P.1.150.000465
ORF1ab/nsp2358S358delTCA---22P.20.000373
ORF1ab/nsp2358S358StcAtcG22Q.80.00033
ORF1ab/nsp2358S358StcAtcT110.055556
ORF1ab/nsp2358S358LtCatTa110.055556
ORF1ab/nsp2358S358FtCAtTT110.055556
ORF1ab/nsp2358S358LtCatTa11AA.10.007246
ORF1ab/nsp2358S358FtCAtTT11All0
ORF1ab/nsp2358S358ATcaGca11AY.1000.000046
ORF1ab/nsp2358S358StcAtcG11AY.1010.00049
ORF1ab/nsp2358S358TTcaAca11AY.1030.000006
ORF1ab/nsp2358S358ATcaGca11AY.1060.000335
ORF1ab/nsp2358S358StcAtcG11AY.1060.000335
ORF1ab/nsp2358S358LtCatTa11AY.1090.00074
ORF1ab/nsp2358S358StcAtcG11AY.1110.000183
ORF1ab/nsp2358S358delTCA---11AY.1110.000183
ORF1ab/nsp2358S358LtCatTa11AY.1130.000142
ORF1ab/nsp2358S358PTcaCca11AY.1140.000231
ORF1ab/nsp2358S358StcAtcG11AY.1160.000287
ORF1ab/nsp2358S358ATcaGca11AY.1160.000287
ORF1ab/nsp2358S358LtCatTa11AY.1160.000287
ORF1ab/nsp2358S358LtCatTa11AY.1170.000085
ORF1ab/nsp2358S358PTcaCca11AY.1170.000085
ORF1ab/nsp2358S358StcAtcG11AY.1170.000085
ORF1ab/nsp2358S358ATcaGca11AY.1190.000035
ORF1ab/nsp2358S358PTcaCca11AY.120.000316
ORF1ab/nsp2358S358StcAtcG11AY.1200.000037
ORF1ab/nsp2358S358ATcaGca11AY.120.10.000321
ORF1ab/nsp2358S358LtCatTa11AY.120.20.001285
ORF1ab/nsp2358S358ATcaGca11AY.120.20.001285
ORF1ab/nsp2358S358ATcaGca11AY.1210.000135
ORF1ab/nsp2358S358LtCatTa11AY.130.000161
ORF1ab/nsp2358S358StcAtcT11AY.140.000088
ORF1ab/nsp2358S358PTcaCca11AY.20.000356
ORF1ab/nsp2358S358ATcaGca11AY.210.001898
ORF1ab/nsp2358S358LtCatTa11AY.240.000431
ORF1ab/nsp2358S358delTCA---11AY.250.000006
ORF1ab/nsp2358S358ATcaGca11AY.260.000028
ORF1ab/nsp2358S358StcAtcG11AY.270.000065
ORF1ab/nsp2358S358ATcaGca11AY.290.000016
ORF1ab/nsp2358S358TTcaAca11AY.30.00001
ORF1ab/nsp2358S358LtCatTa11AY.340.000097
ORF1ab/nsp2358S358LtCatTa11AY.34.10.00051
ORF1ab/nsp2358S358PTcaCca11AY.350.000233
ORF1ab/nsp2358S358LtCatTa11AY.360.000148
ORF1ab/nsp2358S358LtCatTa11AY.370.000316
ORF1ab/nsp2358S358TTcaAca11AY.40.000002
ORF1ab/nsp2358S358XtCatAa11AY.40.000002
ORF1ab/nsp2358S358StcAtcG11AY.4.2.10.000149
ORF1ab/nsp2358S358LtCatTa11AY.4.40.000409
ORF1ab/nsp2358S358ATcaGca11AY.400.000964
ORF1ab/nsp2358S358ATcaGca11AY.420.00004
ORF1ab/nsp2358S358delTCA---11AY.430.000004
ORF1ab/nsp2358S358PTcaCca11AY.450.000122
ORF1ab/nsp2358S358ATcaGca11AY.450.000122
ORF1ab/nsp2358S358StcAtcG11AY.46.60.000072
ORF1ab/nsp2358S358LtCatTa11AY.5.30.000337
ORF1ab/nsp2358S358PTcACcG11AY.520.000814
ORF1ab/nsp2358S358StcAtcG11AY.540.000095
ORF1ab/nsp2358S358TTcaAca11AY.550.000917
ORF1ab/nsp2358S358ATcaGca11AY.550.000917
ORF1ab/nsp2358S358LtCatTa11AY.590.00053
ORF1ab/nsp2358S358StcAtcT11AY.60.000041
ORF1ab/nsp2358S358LtCatTa11AY.610.000105
ORF1ab/nsp2358S358LtCatTa11AY.640.000595
ORF1ab/nsp2358S358LtCatTa11AY.650.000533
ORF1ab/nsp2358S358delTCA---11AY.660.00107
ORF1ab/nsp2358S358ATcaGca11AY.670.000464
ORF1ab/nsp2358S358LtCatTa11AY.690.000187
ORF1ab/nsp2358S358ATcaGca11AY.690.000187
ORF1ab/nsp2358S358StcAtcG11AY.70.000196
ORF1ab/nsp2358S358LtCatTa11AY.7.10.000113
ORF1ab/nsp2358S358LtCatTa11AY.7.20.000559
ORF1ab/nsp2358S358PTcaCca11AY.7.20.000559
ORF1ab/nsp2358S358ATcaGca11AY.700.000209
ORF1ab/nsp2358S358PTcaCca11AY.710.000475
ORF1ab/nsp2358S358LtCatTa11AY.720.001361
ORF1ab/nsp2358S358ATcaGca11AY.720.001361
ORF1ab/nsp2358S358ATcaGca11AY.730.000665
ORF1ab/nsp2358S358LtCatTa11AY.740.000116
ORF1ab/nsp2358S358PTcaCca11AY.750.000056
ORF1ab/nsp2358S358StcAtcT11AY.75.10.00018
ORF1ab/nsp2358S358LtCatTa11AY.80.000606
ORF1ab/nsp2358S358PTcaCca11AY.880.000884
ORF1ab/nsp2358S358LtCatTa11AY.890.004902
ORF1ab/nsp2358S358PTcaCca11AY.9.20.000037
ORF1ab/nsp2358S358ATcaGca11AY.900.000684
ORF1ab/nsp2358S358delTCA---11AY.910.00073
ORF1ab/nsp2358S358StcAtcG11AY.980.000079
ORF1ab/nsp2358S358LtCatTa11AY.990.001049
ORF1ab/nsp2358S358ATcaGca11AY.99.10.001553
ORF1ab/nsp2358S358LtCatTa11B0.000128
ORF1ab/nsp2358S358ATcaGca11B0.000128
ORF1ab/nsp2358S358StcAtcT11B.10.000009
ORF1ab/nsp2358S358ATcaGca11B.1.10.000018
ORF1ab/nsp2358S358PTcaCca11B.1.10.000018
ORF1ab/nsp2358S358LtCatTa11B.1.1.1210.002427
ORF1ab/nsp2358S358ATcaGca11B.1.1.1700.001247
ORF1ab/nsp2358S358LtCatTa11B.1.1.1890.001513
ORF1ab/nsp2358S358LtCatTa11B.1.1.2140.000055
ORF1ab/nsp2358S358LtCatTa11B.1.1.2210.010101
ORF1ab/nsp2358S358LtCatTa11B.1.1.2220.000204
ORF1ab/nsp2358S358PTcaCca11B.1.1.2220.000204
ORF1ab/nsp2358S358PTcaCca11B.1.1.2310.003096
ORF1ab/nsp2358S358LtCatTa11B.1.1.2370.005405
ORF1ab/nsp2358S358StcAtcG11B.1.1.280.000311
ORF1ab/nsp2358S358LtCatTa11B.1.1.280.000311
ORF1ab/nsp2358S358delTCA---11B.1.1.2840.000107
ORF1ab/nsp2358S358LtCatTa11B.1.1.2860.002899
ORF1ab/nsp2358S358StcAtcG11B.1.1.2860.002899
ORF1ab/nsp2358S358LtCatTa11B.1.1.2910.000742
ORF1ab/nsp2358S358TTcaAca11B.1.1.2910.000742
ORF1ab/nsp2358S358ATcaGca11B.1.1.3260.001761
ORF1ab/nsp2358S358PTcaCca11B.1.1.3330.001076
ORF1ab/nsp2358S358LtCatTa11B.1.1.3630.005988
ORF1ab/nsp2358S358StcAtcG11B.1.1.3800.009804
ORF1ab/nsp2358S358LtCatTa11B.1.1.4110.014706
ORF1ab/nsp2358S358PTcaCca11B.1.1.4200.001006
ORF1ab/nsp2358S358PTcaCca11B.1.1.4320.001266
ORF1ab/nsp2358S358LtCatTa11B.1.1.4480.002033
ORF1ab/nsp2358S358LtCatTa11B.1.1.470.005348
ORF1ab/nsp2358S358LtCatTa11B.1.1.4850.016667
ORF1ab/nsp2358S358StcAtcG11B.1.1.5190.00004
ORF1ab/nsp2358S358ATcaGca11B.1.1.630.000386
ORF1ab/nsp2358S358TTcaAca11B.1.1.70.000001
ORF1ab/nsp2358S358del2TCa--a11B.1.1.70.000001
ORF1ab/nsp2358S358del1tcAtc-11B.1.1.70.000001
ORF1ab/nsp2358S358PTcaCca11B.1.1.700.000341
ORF1ab/nsp2358S358LtCatTa11B.1.120.008
ORF1ab/nsp2358S358LtCatTa11B.1.1420.002899
ORF1ab/nsp2358S358LtCatTa11B.1.1490.003425
ORF1ab/nsp2358S358LtCatTa11B.1.160.300.002976
ORF1ab/nsp2358S358StcAtcG11B.1.1770.000013
ORF1ab/nsp2358S358delTCA---11B.1.177.190.001431
ORF1ab/nsp2358S358StcAtcG11B.1.177.410.0025
ORF1ab/nsp2358S358LtCatTa11B.1.177.520.001757
ORF1ab/nsp2358S358delTCA---11B.1.177.540.000606
ORF1ab/nsp2358S358LtCatTa11B.1.177.60.000977
ORF1ab/nsp2358S358LtCatTa11B.1.177.690.001484
ORF1ab/nsp2358S358LtCatTa11B.1.177.730.000566
ORF1ab/nsp2358S358LtCatTa11B.1.177.810.000189
ORF1ab/nsp2358S358StcAtcG11B.1.177.830.001481
ORF1ab/nsp2358S358del1tcAtc-11B.1.20.000009
ORF1ab/nsp2358S358TTcaAca11B.1.20.000009
ORF1ab/nsp2358S358LtCatTa11B.1.221.10.002907
ORF1ab/nsp2358S358XtCatAa11B.1.221.30.000833
ORF1ab/nsp2358S358LtCatTa11B.1.2390.001221
ORF1ab/nsp2358S358StcAtcT11B.1.2430.00007
ORF1ab/nsp2358S358LtCatTa11B.1.258.170.000104
ORF1ab/nsp2358S358LtCatTa11B.1.258.90.005
ORF1ab/nsp2358S358PTcaCca11B.1.30.002618
ORF1ab/nsp2358S358TTcaAca11B.1.3320.003497
ORF1ab/nsp2358S358PTcaCca11B.1.3510.00003
ORF1ab/nsp2358S358TTcaAca11B.1.3510.00003
ORF1ab/nsp2358S358LtCatTa11B.1.3510.00003
ORF1ab/nsp2358S358delTCA---11B.1.360.000146
ORF1ab/nsp2358S358LtCatTa11B.1.3620.001541
ORF1ab/nsp2358S358StcAtcG11B.1.3660.004878
ORF1ab/nsp2358S358LtCatTa11B.1.3670.000792
ORF1ab/nsp2358S358LtCatTa11B.1.390.003906
ORF1ab/nsp2358S358LtCatTa11B.1.3960.000706
ORF1ab/nsp2358S358LtCatTa11B.1.3990.001934
ORF1ab/nsp2358S358PTcaCca11B.1.4000.000429
ORF1ab/nsp2358S358ATcaGca11B.1.4090.000781
ORF1ab/nsp2358S358PTcaCca11B.1.4110.003704
ORF1ab/nsp2358S358ATcaGca11B.1.416.10.001563
ORF1ab/nsp2358S358delTCA---11B.1.4390.005917
ORF1ab/nsp2358S358StcAtcG11B.1.4690.00361
ORF1ab/nsp2358S358StcAtcG11B.1.4700.001404
ORF1ab/nsp2358S358LtCatTa11B.1.5240.001406
ORF1ab/nsp2358S358PTcaCca11B.1.5640.000426
ORF1ab/nsp2358S358LtCatTa11B.1.5950.000261
ORF1ab/nsp2358S358PTcaCca11B.1.5960.000087
ORF1ab/nsp2358S358LtCatTa11B.1.5960.000087
ORF1ab/nsp2358S358LtCatTa11B.1.617.10.000129
ORF1ab/nsp2358S358ATcaGca11B.1.617.10.000129
ORF1ab/nsp2358S358del2TCAC--11B.1.617.20.000004
ORF1ab/nsp2358S358LtCatTa11B.1.6200.000946
ORF1ab/nsp2358S358LtCatTa11B.1.6210.000089
ORF1ab/nsp2358S358LtCatTa11B.1.6280.000352
ORF1ab/nsp2358S358LtCatTa11B.1.9.50.005682
ORF1ab/nsp2358S358LtCatTa11B.400.000364
ORF1ab/nsp2358S358TTcaAca11C.110.010638
ORF1ab/nsp2358S358LtCatTa11C.110.010638
ORF1ab/nsp2358S358PTcaCca11C.140.004329
ORF1ab/nsp2358S358PTcaCca11C.360.000911
ORF1ab/nsp2358S358LtCatTa11D.20.000075
ORF1ab/nsp2358S358StcAtcG11D.20.000075
ORF1ab/nsp2358S358PTcaCca11P.1.10.000318
ORF1ab/nsp2358S358LtCatTa11P.1.10.000318
ORF1ab/nsp2358S358del1Tca-ca11P.1.10.000318
ORF1ab/nsp2358S358LtCatTa11P.1.10.10.00813
ORF1ab/nsp2358S358StcAtcG11P.1.140.000048
ORF1ab/nsp2358S358PTcaCca11P.1.150.000232
ORF1ab/nsp2358S358LtCatTa11P.1.160.000374
ORF1ab/nsp2358S358XtCatAa11P.1.170.000162
ORF1ab/nsp2358S358LtCatTa11P.1.170.000162
ORF1ab/nsp2358S358PTcaCca11P.1.20.001156
ORF1ab/nsp2358S358StcAtcG11P.20.000187
ORF1ab/nsp2358S358LtCatTa11P.20.000187
ORF1ab/nsp2358S358LtCatTa11P.30.001595
ORF1ab/nsp2358S358StcAtcG11Q.10.000126
ORF1ab/nsp2358S358delTCA---11Q.10.000126
ORF1ab/nsp2358S358PTcaCca11Q.10.000126
ORF1ab/nsp2358S358LtCatTa11Q.20.000613
ORF1ab/nsp2358S358PTcaCca11Q.30.000145
ORF1ab/nsp2358S358PTcaCca11R.10.00009