CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 356

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2356F356LF536LnonsynTttCtt252421540.8534071871-1873
ORF1ab/nsp2356F356LF536LnonsynttTttA25243350.1327261871-1873
ORF1ab/nsp2356F356LF536LnonsynttTttG2524350.01386691871-1873
ORF1ab/nsp2356F356VF536VnonsynTttGtt7517480.9960051871-1873
ORF1ab/nsp2356F356VF536VnonsynTtTGtC75120.002663121871-1873
ORF1ab/nsp2356F356VF536VnonsynTtTGtA75110.001331561871-1873
ORF1ab/nsp2356F356FF536FsynttTttC16816811871-1873
ORF1ab/nsp2356F356SF536SnonsyntTttCt898911871-1873
ORF1ab/nsp2356F356delF536deldelTTT---555511871-1873
ORF1ab/nsp2356F356CF536CnonsyntTttGt333311871-1873
ORF1ab/nsp2356F356del1F536del1delTtt-tt12110.9166671871-1873
ORF1ab/nsp2356F356del1F536del1delTTT-CG1210.08333331871-1873
ORF1ab/nsp2356F356YF536YnonsyntTttAt7711871-1873
ORF1ab/nsp2356F356XF536XnonsyntTTtAA740.5714291871-1873
ORF1ab/nsp2356F356XF536XnonsyntTTtGA730.4285711871-1873
ORF1ab/nsp2356F356HF536HnonsynTTTCAC3311871-1873
ORF1ab/nsp2356F356DF536DnonsynTTtGAt2211871-1873
ORF1ab/nsp2356F356AF536AnonsynTTTGCC2211871-1873
ORF1ab/nsp2356F356GF536GnonsynTTTGGA210.51871-1873
ORF1ab/nsp2356F356GF536GnonsynTTtGGt210.51871-1873
ORF1ab/nsp2356F356IF536InonsynTttAtt1111871-1873
ORF1ab/nsp2356F356NF536NnonsynTTtAAt1111871-1873
ORF1ab/nsp2356F356EF536EnonsynTTTGAA1111871-1873

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2356F356LTttCtt21542524All0.000412
ORF1ab/nsp2356F356LttTttA3352524All0.000064
ORF1ab/nsp2356F356LttTttG352524All0.000007
ORF1ab/nsp2356F356LTttCtt11061106AY.910.807889
ORF1ab/nsp2356F356VTttGtt748751All0.000143
ORF1ab/nsp2356F356VTtTGtC2751All0
ORF1ab/nsp2356F356VTtTGtA1751All0
ORF1ab/nsp2356F356LTttCtt574578AY.40.000893
ORF1ab/nsp2356F356LttTttG3578AY.40.000005
ORF1ab/nsp2356F356LttTttA1578AY.40.000002
ORF1ab/nsp2356F356LttTttA288288AY.750.016134
ORF1ab/nsp2356F356LTttCtt243243AY.91.10.987805
ORF1ab/nsp2356F356FttTttC168168All0.000032
ORF1ab/nsp2356F356StTttCt8989All0.000017
ORF1ab/nsp2356F356VTttGtt8282AY.1020.002174
ORF1ab/nsp2356F356VTttGtt7171AY.650.037846
ORF1ab/nsp2356F356delTTT---5555All0.000011
ORF1ab/nsp2356F356VTttGtt5050AY.390.001236
ORF1ab/nsp2356F356FttTttC4848B.1.1.70.000043
ORF1ab/nsp2356F356VTttGtt4647B.1.617.20.000173
ORF1ab/nsp2356F356VTtTGtA147B.1.617.20.000004
ORF1ab/nsp2356F356VTttGtt4545B.10.000412
ORF1ab/nsp2356F356VTttGtt4141AY.430.000182
ORF1ab/nsp2356F356LTttCtt3341B.1.617.20.000124
ORF1ab/nsp2356F356LttTttG441B.1.617.20.000015
ORF1ab/nsp2356F356LttTttA441B.1.617.20.000015
ORF1ab/nsp2356F356VTttGtt3535B.1.1.70.000031
ORF1ab/nsp2356F356LTttCtt3235B.1.1.70.000029
ORF1ab/nsp2356F356LttTttA335B.1.1.70.000003
ORF1ab/nsp2356F356VTttGtt3434C.370.003946
ORF1ab/nsp2356F356CtTttGt3333All0.000006
ORF1ab/nsp2356F356StTttCt3131B.1.3510.000922
ORF1ab/nsp2356F356VTttGtt2424AY.440.000146
ORF1ab/nsp2356F356LTttCtt2222AY.1020.000583
ORF1ab/nsp2356F356VTttGtt2222AY.530.006325
ORF1ab/nsp2356F356VTttGtt2121AY.330.001402
ORF1ab/nsp2356F356LTttCtt2020AY.390.000494
ORF1ab/nsp2356F356VTttGtt1919B.1.1770.00025
ORF1ab/nsp2356F356VTttGtt1414AY.120.004425
ORF1ab/nsp2356F356delTTT---1414B.1.1.70.000013
ORF1ab/nsp2356F356VTttGtt1213AY.1030.000075
ORF1ab/nsp2356F356LttTttA613AY.1030.000037
ORF1ab/nsp2356F356LTttCtt413AY.1030.000025
ORF1ab/nsp2356F356LttTttG313AY.1030.000019
ORF1ab/nsp2356F356VTtTGtC113AY.1030.000006
ORF1ab/nsp2356F356VTttGtt1313AY.50.000268
ORF1ab/nsp2356F356LttTttA1113B.1.6090.005273
ORF1ab/nsp2356F356LttTttG213B.1.6090.000959
ORF1ab/nsp2356F356del1Ttt-tt1112All0.000002
ORF1ab/nsp2356F356del1TTT-CG112All0
ORF1ab/nsp2356F356VTttGtt1212AY.1210.001624
ORF1ab/nsp2356F356StTttCt1212AY.430.000053
ORF1ab/nsp2356F356VTttGtt1212AY.980.000948
ORF1ab/nsp2356F356LttTttA1012B.1.10.000181
ORF1ab/nsp2356F356LTttCtt212B.1.10.000036
ORF1ab/nsp2356F356FttTttC1111AY.40.000017
ORF1ab/nsp2356F356LTttCtt1111B.1.1.2140.00061
ORF1ab/nsp2356F356LTttCtt1111B.1.2580.000732
ORF1ab/nsp2356F356FttTttC99AY.440.000055
ORF1ab/nsp2356F356FttTttC99AY.50.000186
ORF1ab/nsp2356F356LttTttA99R.10.00081
ORF1ab/nsp2356F356VTttGtt88AY.40.000012
ORF1ab/nsp2356F356LTttCtt88AY.5.30.002699
ORF1ab/nsp2356F356FttTttC88B.1.1.1530.008762
ORF1ab/nsp2356F356YtTttAt77All0.000001
ORF1ab/nsp2356F356XtTTtAA47All0.000001
ORF1ab/nsp2356F356XtTTtGA37All0.000001
ORF1ab/nsp2356F356LTttCtt77AY.50.000145
ORF1ab/nsp2356F356LttTttG47B.10.000037
ORF1ab/nsp2356F356LTttCtt37B.10.000027
ORF1ab/nsp2356F356VTttGtt77B.1.10.000127
ORF1ab/nsp2356F356VTttGtt66AY.1130.000854
ORF1ab/nsp2356F356LttTttG66AY.1210.000812
ORF1ab/nsp2356F356VTttGtt66AY.260.00017
ORF1ab/nsp2356F356VTttGtt55AY.1050.003215
ORF1ab/nsp2356F356CtTttGt55AY.40.000008
ORF1ab/nsp2356F356LTttCtt55AY.430.000022
ORF1ab/nsp2356F356LTttCtt45AY.440.000024
ORF1ab/nsp2356F356LttTttA15AY.440.000006
ORF1ab/nsp2356F356VTttGtt55AY.460.00052
ORF1ab/nsp2356F356LTttCtt55AY.550.004587
ORF1ab/nsp2356F356FttTttC55AY.920.001436
ORF1ab/nsp2356F356VTttGtt55B0.000639
ORF1ab/nsp2356F356FttTttC55B.10.000046
ORF1ab/nsp2356F356FttTttC55B.1.1.4340.001743
ORF1ab/nsp2356F356StTttCt55B.1.1.70.000004
ORF1ab/nsp2356F356StTttCt55B.1.4290.000118
ORF1ab/nsp2356F356VTttGtt55B.1.6210.000443
ORF1ab/nsp2356F356VTttGtt55P.10.000079
ORF1ab/nsp2356F356FttTttC44AY.1200.000149
ORF1ab/nsp2356F356VTttGtt44AY.1200.000149
ORF1ab/nsp2356F356VTttGtt44AY.200.000155
ORF1ab/nsp2356F356FttTttC44AY.240.001724
ORF1ab/nsp2356F356VTttGtt44AY.250.000024
ORF1ab/nsp2356F356LTttCtt44AY.30.00004
ORF1ab/nsp2356F356StTttCt44AY.4.2.10.000596
ORF1ab/nsp2356F356StTttCt44AY.440.000024
ORF1ab/nsp2356F356LTttCtt44AY.450.000487
ORF1ab/nsp2356F356VTttGtt44AY.9.20.000147
ORF1ab/nsp2356F356del1Ttt-tt44AY.99.20.000369
ORF1ab/nsp2356F356LttTttG44B.1.1.2070.004728
ORF1ab/nsp2356F356delTTT---44B.1.1.330.001684
ORF1ab/nsp2356F356VTttGtt44B.1.1600.000125
ORF1ab/nsp2356F356delTTT---44B.1.1770.000053
ORF1ab/nsp2356F356StTttCt44B.1.20.000035
ORF1ab/nsp2356F356CtTttGt44B.1.2100.008529
ORF1ab/nsp2356F356FttTttC44B.1.351.30.003506
ORF1ab/nsp2356F356FttTttC44B.1.617.20.000015
ORF1ab/nsp2356F356XtTTtAA24B.1.617.20.000008
ORF1ab/nsp2356F356XtTTtGA24B.1.617.20.000008
ORF1ab/nsp2356F356FttTttC44P.10.000063
ORF1ab/nsp2356F356LTttCtt34P.10.000047
ORF1ab/nsp2356F356LttTttG14P.10.000016
ORF1ab/nsp2356F356HTTTCAC33All0.000001
ORF1ab/nsp2356F356VTttGtt33AY.1060.001005
ORF1ab/nsp2356F356LTttCtt33AY.290.000047
ORF1ab/nsp2356F356VTttGtt33AY.30.00003
ORF1ab/nsp2356F356VTttGtt23AY.39.10.000079
ORF1ab/nsp2356F356VTtTGtC13AY.39.10.00004
ORF1ab/nsp2356F356LTttCtt33AY.420.000121
ORF1ab/nsp2356F356VTttGtt33AY.420.000121
ORF1ab/nsp2356F356FttTttC33AY.430.000013
ORF1ab/nsp2356F356VTttGtt33AY.920.000862
ORF1ab/nsp2356F356VTttGtt33B.1.1.2890.00625
ORF1ab/nsp2356F356VTttGtt33B.1.1.3170.001235
ORF1ab/nsp2356F356delTTT---33B.1.1.3480.002389
ORF1ab/nsp2356F356CtTttGt33B.1.1.3910.025641
ORF1ab/nsp2356F356VTttGtt33B.1.20.000026
ORF1ab/nsp2356F356LTttCtt33B.1.2430.000209
ORF1ab/nsp2356F356FttTttC33B.1.3970.014563
ORF1ab/nsp2356F356StTttCt33P.10.000047
ORF1ab/nsp2356F356StTttCt220.111111
ORF1ab/nsp2356F356ATTTGCC220.111111
ORF1ab/nsp2356F356HTTTCAC220.111111
ORF1ab/nsp2356F356VTttGtt22A0.000774
ORF1ab/nsp2356F356LttTttG22A0.000774
ORF1ab/nsp2356F356DTTtGAt22All0
ORF1ab/nsp2356F356ATTTGCC22All0
ORF1ab/nsp2356F356GTTTGGA12All0
ORF1ab/nsp2356F356GTTtGGt12All0
ORF1ab/nsp2356F356VTttGtt22AY.1000.000092
ORF1ab/nsp2356F356FttTttC22AY.1030.000012
ORF1ab/nsp2356F356XtTTtGA12AY.1130.000142
ORF1ab/nsp2356F356XtTTtAA12AY.1130.000142
ORF1ab/nsp2356F356VTttGtt22AY.116.10.000623
ORF1ab/nsp2356F356LTttCtt22AY.160.000759
ORF1ab/nsp2356F356VTttGtt22AY.230.000139
ORF1ab/nsp2356F356FttTttC22AY.23.10.000835
ORF1ab/nsp2356F356FttTttC22AY.250.000012
ORF1ab/nsp2356F356LTttCtt22AY.250.000012
ORF1ab/nsp2356F356FttTttC22AY.260.000057
ORF1ab/nsp2356F356FttTttC22AY.30.00002
ORF1ab/nsp2356F356VTttGtt22AY.340.000194
ORF1ab/nsp2356F356FttTttC22AY.390.000049
ORF1ab/nsp2356F356delTTT---22AY.40.000003
ORF1ab/nsp2356F356StTttCt22AY.40.000003
ORF1ab/nsp2356F356LTttCtt22AY.4.30.001684
ORF1ab/nsp2356F356FttTttC22AY.420.00008
ORF1ab/nsp2356F356delTTT---22AY.430.000009
ORF1ab/nsp2356F356CtTttGt22AY.440.000012
ORF1ab/nsp2356F356LTttCtt22AY.580.001815
ORF1ab/nsp2356F356VTttGtt22AY.610.00021
ORF1ab/nsp2356F356LTttCtt22AY.610.00021
ORF1ab/nsp2356F356VTttGtt22AY.710.00095
ORF1ab/nsp2356F356VTttGtt22AY.750.000112
ORF1ab/nsp2356F356LTttCtt22AY.840.000875
ORF1ab/nsp2356F356VTttGtt22AY.9.10.000167
ORF1ab/nsp2356F356VTttGtt22AY.910.001461
ORF1ab/nsp2356F356CtTttGt22AY.99.20.000184
ORF1ab/nsp2356F356StTttCt22B.10.000018
ORF1ab/nsp2356F356CtTttGt22B.10.000018
ORF1ab/nsp2356F356FttTttC22B.1.10.000036
ORF1ab/nsp2356F356VTttGtt22B.1.1.4200.002012
ORF1ab/nsp2356F356FttTttC22B.1.1.5190.000079
ORF1ab/nsp2356F356CtTttGt22B.1.1.70.000002
ORF1ab/nsp2356F356LTttCtt22B.1.160.250.022222
ORF1ab/nsp2356F356FttTttC22B.1.1770.000026
ORF1ab/nsp2356F356LTttCtt22B.1.177.160.001329
ORF1ab/nsp2356F356VTttGtt22B.1.177.180.00232
ORF1ab/nsp2356F356FttTttC22B.1.20.000018
ORF1ab/nsp2356F356LttTttG12B.1.20.000009
ORF1ab/nsp2356F356LTttCtt12B.1.20.000009
ORF1ab/nsp2356F356VTttGtt22B.1.2400.000431
ORF1ab/nsp2356F356VTttGtt22B.1.2430.000139
ORF1ab/nsp2356F356FttTttC22B.1.3690.00057
ORF1ab/nsp2356F356VTttGtt22B.1.5260.000047
ORF1ab/nsp2356F356VTttGtt22B.1.617.10.000258
ORF1ab/nsp2356F356StTttCt22B.1.617.20.000008
ORF1ab/nsp2356F356YtTttAt22B.1.617.20.000008
ORF1ab/nsp2356F356CtTttGt22B.1.617.20.000008
ORF1ab/nsp2356F356GTTtGGt12B.1.617.20.000004
ORF1ab/nsp2356F356GTTTGGA12B.1.617.20.000004
ORF1ab/nsp2356F356FttTttC22B.1.6210.000177
ORF1ab/nsp2356F356VTttGtt22D.20.00015
ORF1ab/nsp2356F356delTTT---22N.60.014184
ORF1ab/nsp2356F356VTttGtt22N.90.011905
ORF1ab/nsp2356F356delTTT---22P.20.000373
ORF1ab/nsp2356F356VTttGtt22Q.80.00033
ORF1ab/nsp2356F356VTttGtt11A.23.10.000704
ORF1ab/nsp2356F356CtTttGt11AA.60.016129
ORF1ab/nsp2356F356ETTTGAA11All0
ORF1ab/nsp2356F356NTTtAAt11All0
ORF1ab/nsp2356F356ITttAtt11All0
ORF1ab/nsp2356F356LttTttG11AY.10.000396
ORF1ab/nsp2356F356VTttGtt11AY.10.000396
ORF1ab/nsp2356F356LTttCtt11AY.1000.000046
ORF1ab/nsp2356F356VTttGtt11AY.1010.00049
ORF1ab/nsp2356F356FttTttC11AY.1020.000027
ORF1ab/nsp2356F356CtTttGt11AY.1030.000006
ORF1ab/nsp2356F356LTttCtt11AY.1050.000643
ORF1ab/nsp2356F356VTttGtt11AY.1080.001103
ORF1ab/nsp2356F356VTttGtt11AY.110.001339
ORF1ab/nsp2356F356VTttGtt11AY.1110.000183
ORF1ab/nsp2356F356delTTT---11AY.1110.000183
ORF1ab/nsp2356F356YtTttAt11AY.1130.000142
ORF1ab/nsp2356F356FttTttC11AY.1130.000142
ORF1ab/nsp2356F356CtTttGt11AY.1130.000142
ORF1ab/nsp2356F356VTttGtt11AY.1140.000231
ORF1ab/nsp2356F356CtTttGt11AY.1160.000287
ORF1ab/nsp2356F356VTttGtt11AY.1170.000085
ORF1ab/nsp2356F356VTttGtt11AY.1180.000063
ORF1ab/nsp2356F356LTttCtt11AY.1180.000063
ORF1ab/nsp2356F356VTttGtt11AY.1190.000035
ORF1ab/nsp2356F356CtTttGt11AY.1200.000037
ORF1ab/nsp2356F356VTttGtt11AY.130.000161
ORF1ab/nsp2356F356LTttCtt11AY.140.000088
ORF1ab/nsp2356F356VTttGtt11AY.16.10.00047
ORF1ab/nsp2356F356LTttCtt11AY.170.008197
ORF1ab/nsp2356F356VTttGtt11AY.190.00114
ORF1ab/nsp2356F356delTTT---11AY.250.000006
ORF1ab/nsp2356F356YtTttAt11AY.250.000006
ORF1ab/nsp2356F356StTttCt11AY.270.000065
ORF1ab/nsp2356F356CtTttGt11AY.30.00001
ORF1ab/nsp2356F356FttTttC11AY.320.000532
ORF1ab/nsp2356F356VTttGtt11AY.320.000532
ORF1ab/nsp2356F356FttTttC11AY.340.000097
ORF1ab/nsp2356F356StTttCt11AY.380.000499
ORF1ab/nsp2356F356LTttCtt11AY.39.10.00004
ORF1ab/nsp2356F356FttTttC11AY.39.10.00004
ORF1ab/nsp2356F356VTttGtt11AY.4.40.000409
ORF1ab/nsp2356F356delTTT---11AY.4.50.000107
ORF1ab/nsp2356F356VTttGtt11AY.400.000964
ORF1ab/nsp2356F356del1Ttt-tt11AY.430.000004
ORF1ab/nsp2356F356DTTtGAt11AY.440.000006
ORF1ab/nsp2356F356delTTT---11AY.440.000006
ORF1ab/nsp2356F356YtTttAt11AY.440.000006
ORF1ab/nsp2356F356del1TTT-CG11AY.440.000006
ORF1ab/nsp2356F356delTTT---11AY.460.000104
ORF1ab/nsp2356F356VTttGtt11AY.46.20.000635
ORF1ab/nsp2356F356VTttGtt11AY.46.40.000165
ORF1ab/nsp2356F356CtTttGt11AY.46.60.000072
ORF1ab/nsp2356F356StTttCt11AY.46.60.000072
ORF1ab/nsp2356F356delTTT---11AY.470.000031
ORF1ab/nsp2356F356LTttCtt11AY.480.000465
ORF1ab/nsp2356F356VTttGtt11AY.480.000465
ORF1ab/nsp2356F356delTTT---11AY.50.000021
ORF1ab/nsp2356F356VTttGtt11AY.5.40.000277
ORF1ab/nsp2356F356LttTttA11AY.520.000814
ORF1ab/nsp2356F356ITttAtt11AY.60.000041
ORF1ab/nsp2356F356LTttCtt11AY.620.000436
ORF1ab/nsp2356F356delTTT---11AY.660.00107
ORF1ab/nsp2356F356delTTT---11AY.670.000464
ORF1ab/nsp2356F356VTttGtt11AY.700.000209
ORF1ab/nsp2356F356LTttCtt11AY.75.10.00018
ORF1ab/nsp2356F356VTttGtt11AY.770.001127
ORF1ab/nsp2356F356LTttCtt11AY.780.001541
ORF1ab/nsp2356F356XtTTtAA11AY.840.000437
ORF1ab/nsp2356F356YtTttAt11AY.840.000437
ORF1ab/nsp2356F356FttTttC11AY.850.000427
ORF1ab/nsp2356F356LTttCtt11AY.850.000427
ORF1ab/nsp2356F356VTttGtt11AY.90.000068
ORF1ab/nsp2356F356FttTttC11AY.90.000068
ORF1ab/nsp2356F356CtTttGt11AY.9.20.000037
ORF1ab/nsp2356F356delTTT---11AY.910.00073
ORF1ab/nsp2356F356LTttCtt11AY.920.000287
ORF1ab/nsp2356F356FttTttC11AY.940.000443
ORF1ab/nsp2356F356LTttCtt11AY.950.000761
ORF1ab/nsp2356F356LTttCtt11AY.960.002075
ORF1ab/nsp2356F356FttTttC11AY.970.001701
ORF1ab/nsp2356F356LttTttG11AY.980.000079
ORF1ab/nsp2356F356del1Ttt-tt11AY.980.000079
ORF1ab/nsp2356F356CtTttGt11AY.98.10.000048
ORF1ab/nsp2356F356del1Ttt-tt11AY.990.001049
ORF1ab/nsp2356F356VTttGtt11AY.99.20.000092
ORF1ab/nsp2356F356StTttCt11AZ.30.00152
ORF1ab/nsp2356F356HTTTCAC11B.1.10.000018
ORF1ab/nsp2356F356StTttCt11B.1.10.000018
ORF1ab/nsp2356F356FttTttC11B.1.1.10.000327
ORF1ab/nsp2356F356VTttGtt11B.1.1.1130.006993
ORF1ab/nsp2356F356VTttGtt11B.1.1.2040.00304
ORF1ab/nsp2356F356StTttCt11B.1.1.2220.000204
ORF1ab/nsp2356F356LttTttG11B.1.1.2220.000204
ORF1ab/nsp2356F356VTttGtt11B.1.1.2220.000204
ORF1ab/nsp2356F356VTttGtt11B.1.1.2400.004695
ORF1ab/nsp2356F356VTttGtt11B.1.1.250.000569
ORF1ab/nsp2356F356VTttGtt11B.1.1.280.000311
ORF1ab/nsp2356F356LTttCtt11B.1.1.280.000311
ORF1ab/nsp2356F356LTttCtt11B.1.1.2840.000107
ORF1ab/nsp2356F356delTTT---11B.1.1.2840.000107
ORF1ab/nsp2356F356VTttGtt11B.1.1.3930.111111
ORF1ab/nsp2356F356LttTttG11B.1.1.4020.011111
ORF1ab/nsp2356F356VTttGtt11B.1.1.4090.002833
ORF1ab/nsp2356F356LTttCtt11B.1.1.4090.002833
ORF1ab/nsp2356F356VTttGtt11B.1.1.4100.037037
ORF1ab/nsp2356F356StTttCt11B.1.1.5190.00004
ORF1ab/nsp2356F356VTttGtt11B.1.1.5190.00004
ORF1ab/nsp2356F356VTttGtt11B.1.1.5280.004808
ORF1ab/nsp2356F356del1Ttt-tt11B.1.1.70.000001
ORF1ab/nsp2356F356YtTttAt11B.1.1.70.000001
ORF1ab/nsp2356F356VTttGtt11B.1.110.30.000718
ORF1ab/nsp2356F356VTttGtt11B.1.1310.008772
ORF1ab/nsp2356F356VTttGtt11B.1.1420.002899
ORF1ab/nsp2356F356FttTttC11B.1.1600.000031
ORF1ab/nsp2356F356StTttCt11B.1.1600.000031
ORF1ab/nsp2356F356LTttCtt11B.1.1600.000031
ORF1ab/nsp2356F356LTttCtt11B.1.160.260.002421
ORF1ab/nsp2356F356del1Ttt-tt11B.1.1770.000013
ORF1ab/nsp2356F356delTTT---11B.1.177.190.001431
ORF1ab/nsp2356F356VTttGtt11B.1.177.190.001431
ORF1ab/nsp2356F356delTTT---11B.1.177.540.000606
ORF1ab/nsp2356F356VTttGtt11B.1.177.570.000281
ORF1ab/nsp2356F356VTttGtt11B.1.177.580.001332
ORF1ab/nsp2356F356VTttGtt11B.1.177.70.000165
ORF1ab/nsp2356F356StTttCt11B.1.177.70.000165
ORF1ab/nsp2356F356VTttGtt11B.1.177.820.000477
ORF1ab/nsp2356F356delTTT---11B.1.20.000009
ORF1ab/nsp2356F356LTttCtt11B.1.214.20.0006
ORF1ab/nsp2356F356FttTttC11B.1.2210.000071
ORF1ab/nsp2356F356CtTttGt11B.1.2210.000071
ORF1ab/nsp2356F356delTTT---11B.1.221.10.002907
ORF1ab/nsp2356F356NTTtAAt11B.1.221.30.000833
ORF1ab/nsp2356F356VTttGtt11B.1.2390.001221
ORF1ab/nsp2356F356LTttCtt11B.1.2410.000812
ORF1ab/nsp2356F356VTttGtt11B.1.2580.000067
ORF1ab/nsp2356F356LTttCtt11B.1.258.170.000104
ORF1ab/nsp2356F356VTttGtt11B.1.2600.003344
ORF1ab/nsp2356F356VTttGtt11B.1.3200.001245
ORF1ab/nsp2356F356FttTttC11B.1.3460.001311
ORF1ab/nsp2356F356LTttCtt11B.1.3510.00003
ORF1ab/nsp2356F356VTttGtt11B.1.3510.00003
ORF1ab/nsp2356F356delTTT---11B.1.360.000146
ORF1ab/nsp2356F356LTttCtt11B.1.36.170.000494
ORF1ab/nsp2356F356VTttGtt11B.1.3690.000285
ORF1ab/nsp2356F356StTttCt11B.1.4040.001302
ORF1ab/nsp2356F356VTttGtt11B.1.4070.035714
ORF1ab/nsp2356F356VTttGtt11B.1.4150.014286
ORF1ab/nsp2356F356StTttCt11B.1.4270.00005
ORF1ab/nsp2356F356FttTttC11B.1.4270.00005
ORF1ab/nsp2356F356LTttCtt11B.1.4290.000024
ORF1ab/nsp2356F356FttTttC11B.1.4290.000024
ORF1ab/nsp2356F356delTTT---11B.1.4390.005917
ORF1ab/nsp2356F356VTttGtt11B.1.4480.002625
ORF1ab/nsp2356F356LTttCtt11B.1.4560.003268
ORF1ab/nsp2356F356StTttCt11B.1.4590.004082
ORF1ab/nsp2356F356del1Ttt-tt11B.1.4870.019608
ORF1ab/nsp2356F356LttTttG11B.1.5090.000866
ORF1ab/nsp2356F356VTttGtt11B.1.5160.001957
ORF1ab/nsp2356F356VTttGtt11B.1.5170.000427
ORF1ab/nsp2356F356delTTT---11B.1.5250.000113
ORF1ab/nsp2356F356delTTT---11B.1.5260.000024
ORF1ab/nsp2356F356VTttGtt11B.1.5790.011236
ORF1ab/nsp2356F356VTttGtt11B.1.595.20.04
ORF1ab/nsp2356F356delTTT---11B.1.5960.000087
ORF1ab/nsp2356F356StTttCt11B.1.6090.000479
ORF1ab/nsp2356F356VTttGtt11B.1.6090.000479
ORF1ab/nsp2356F356ETTTGAA11B.1.617.20.000004
ORF1ab/nsp2356F356DTTtGAt11B.1.617.20.000004
ORF1ab/nsp2356F356LttTttA11B.1.6280.000352
ORF1ab/nsp2356F356del1Ttt-tt11B.1.6370.000073
ORF1ab/nsp2356F356LTttCtt11B.60.00091
ORF1ab/nsp2356F356VTttGtt11C.390.018868
ORF1ab/nsp2356F356VTttGtt11C.400.027778
ORF1ab/nsp2356F356FttTttC11D.20.000075
ORF1ab/nsp2356F356delTTT---11P.1.10.000318
ORF1ab/nsp2356F356VTttGtt11P.1.170.000162
ORF1ab/nsp2356F356CtTttGt11P.1.170.000162
ORF1ab/nsp2356F356VTttGtt11P.20.000187
ORF1ab/nsp2356F356delTTT---11Q.10.000126
ORF1ab/nsp2356F356VTttGtt11Q.50.016949

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.