CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 354 | Y354Y | Y534Y | syn | taT | taC | 811 | 811 | 1 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354C | Y534C | nonsyn | tAt | tGt | 552 | 551 | 0.998188 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354C | Y534C | nonsyn | tAT | tGC | 552 | 1 | 0.00181159 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354del | Y534del | del | TAT | --- | 55 | 55 | 1 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354H | Y534H | nonsyn | Tat | Cat | 47 | 45 | 0.957447 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354H | Y534H | nonsyn | TaT | CaC | 47 | 2 | 0.0425532 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354X | Y534X | nonsyn | tAT | tGA | 14 | 5 | 0.357143 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354X | Y534X | nonsyn | taT | taG | 14 | 5 | 0.357143 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354X | Y534X | nonsyn | taT | taA | 14 | 4 | 0.285714 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354N | Y534N | nonsyn | Tat | Aat | 9 | 7 | 0.777778 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354N | Y534N | nonsyn | TaT | AaC | 9 | 2 | 0.222222 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354D | Y534D | nonsyn | Tat | Gat | 7 | 7 | 1 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354F | Y534F | nonsyn | tAt | tTt | 7 | 6 | 0.857143 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354F | Y534F | nonsyn | tAT | tTC | 7 | 1 | 0.142857 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354S | Y534S | nonsyn | tAt | tCt | 3 | 2 | 0.666667 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354V | Y534V | nonsyn | TAt | GTt | 3 | 2 | 0.666667 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354S | Y534S | nonsyn | TAT | AGC | 3 | 1 | 0.333333 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354V | Y534V | nonsyn | TAT | GTG | 3 | 1 | 0.333333 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354W | Y534W | nonsyn | tAT | tGG | 2 | 2 | 1 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354K | Y534K | nonsyn | TaT | AaA | 2 | 2 | 1 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354I | Y534I | nonsyn | TAT | ATA | 2 | 1 | 0.5 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354I | Y534I | nonsyn | TAT | ATC | 2 | 1 | 0.5 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354M | Y534M | nonsyn | TAT | ATG | 1 | 1 | 1 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354L | Y534L | nonsyn | tAT | tTA | 1 | 1 | 1 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354R | Y534R | nonsyn | TAT | AGA | 1 | 1 | 1 | 1865-1867 |
ORF1ab/nsp2 | 354 | Y354Q | Y534Q | nonsyn | TaT | CaG | 1 | 1 | 1 | 1865-1867 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 811 | 811 | All | 0.000155 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 595 | 595 | AY.44 | 0.003622 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 551 | 552 | All | 0.000105 |
ORF1ab/nsp2 | 354 | Y354C | tAT | tGC | 1 | 552 | All | 0 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 98 | 98 | AY.25 | 0.000589 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 87 | 87 | AY.4 | 0.000135 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 67 | 67 | B.1.177.25 | 1 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 67 | 67 | C.35 | 0.051858 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 61 | 61 | B.1.1.7 | 0.000055 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 55 | 55 | All | 0.000011 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 54 | 54 | B.1.617.2 | 0.000203 |
ORF1ab/nsp2 | 354 | Y354H | Tat | Cat | 45 | 47 | All | 0.000009 |
ORF1ab/nsp2 | 354 | Y354H | TaT | CaC | 2 | 47 | All | 0 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 32 | 32 | B.1.438.1 | 0.003432 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 23 | 24 | B.1.617.2 | 0.000087 |
ORF1ab/nsp2 | 354 | Y354C | tAT | tGC | 1 | 24 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 22 | 22 | AY.4 | 0.000034 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 20 | 20 | B.1.1.7 | 0.000018 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 17 | 17 | AY.3 | 0.000169 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 16 | 16 | AY.44 | 0.000097 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 16 | 16 | AY.61 | 0.001676 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 15 | 15 | B.1.177 | 0.000198 |
ORF1ab/nsp2 | 354 | Y354X | tAT | tGA | 5 | 14 | All | 0.000001 |
ORF1ab/nsp2 | 354 | Y354X | taT | taG | 5 | 14 | All | 0.000001 |
ORF1ab/nsp2 | 354 | Y354X | taT | taA | 4 | 14 | All | 0.000001 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 14 | 14 | AY.23.1 | 0.005843 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 14 | 14 | AY.98.1 | 0.000678 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 11 | 11 | AY.5 | 0.000227 |
ORF1ab/nsp2 | 354 | Y354N | Tat | Aat | 7 | 9 | All | 0.000001 |
ORF1ab/nsp2 | 354 | Y354N | TaT | AaC | 2 | 9 | All | 0 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 9 | 9 | AY.45 | 0.001095 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 8 | 8 | AY.39 | 0.000198 |
ORF1ab/nsp2 | 354 | Y354D | Tat | Gat | 7 | 7 | All | 0.000001 |
ORF1ab/nsp2 | 354 | Y354F | tAt | tTt | 6 | 7 | All | 0.000001 |
ORF1ab/nsp2 | 354 | Y354F | tAT | tTC | 1 | 7 | All | 0 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 7 | 7 | AY.103 | 0.000043 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp2 | 354 | Y354H | Tat | Cat | 6 | 6 | AY.73 | 0.003992 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp2 | 354 | Y354H | Tat | Cat | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp2 | 354 | Y354H | Tat | Cat | 5 | 5 | AY.103 | 0.000031 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 5 | 5 | AY.47 | 0.000156 |
ORF1ab/nsp2 | 354 | Y354H | Tat | Cat | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp2 | 354 | Y354H | TaT | CaC | 2 | 4 | 0.111111 | |
ORF1ab/nsp2 | 354 | Y354H | Tat | Cat | 2 | 4 | 0.111111 | |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 4 | 4 | AY.118 | 0.000251 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp2 | 354 | Y354N | Tat | Aat | 3 | 4 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 354 | Y354N | TaT | AaC | 1 | 4 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 4 | 4 | R.1 | 0.00036 |
ORF1ab/nsp2 | 354 | Y354S | tAt | tCt | 2 | 3 | All | 0 |
ORF1ab/nsp2 | 354 | Y354V | TAt | GTt | 2 | 3 | All | 0 |
ORF1ab/nsp2 | 354 | Y354S | TAT | AGC | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 354 | Y354V | TAT | GTG | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp2 | 354 | Y354H | Tat | Cat | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 3 | 3 | B.1.12 | 0.024 |
ORF1ab/nsp2 | 354 | Y354H | Tat | Cat | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp2 | 354 | Y354H | Tat | Cat | 3 | 3 | B.1.617.2 | 0.000011 |
ORF1ab/nsp2 | 354 | Y354X | tAT | tGA | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 354 | Y354V | TAt | GTt | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 354 | Y354K | TaT | AaA | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 354 | Y354W | tAT | tGG | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 354 | Y354I | TAT | ATA | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 354 | Y354I | TAT | ATC | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 354 | Y354H | Tat | Cat | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 2 | 2 | AY.6 | 0.000082 |
ORF1ab/nsp2 | 354 | Y354S | tAt | tCt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 2 | 2 | B.1.517 | 0.000854 |
ORF1ab/nsp2 | 354 | Y354X | taT | taA | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 354 | Y354I | TAT | ATC | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 354 | Y354I | TAT | ATA | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 354 | Y354X | tAT | tGA | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 354 | Y354M | TAT | ATG | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 354 | Y354Q | TaT | CaG | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 354 | Y354R | TAT | AGA | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 354 | Y354L | tAT | tTA | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 354 | Y354N | Tat | Aat | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 354 | Y354X | tAT | tGA | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 354 | Y354W | tAT | tGG | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 354 | Y354H | Tat | Cat | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 354 | Y354X | taT | taG | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 354 | Y354H | Tat | Cat | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 354 | Y354H | Tat | Cat | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp2 | 354 | Y354X | taT | taG | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp2 | 354 | Y354D | Tat | Gat | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 354 | Y354H | Tat | Cat | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 354 | Y354X | taT | taA | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 354 | Y354N | TaT | AaC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 354 | Y354M | TAT | ATG | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 354 | Y354X | taT | taA | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 354 | Y354N | Tat | Aat | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 354 | Y354K | TaT | AaA | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 354 | Y354H | Tat | Cat | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | AY.59 | 0.00053 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 354 | Y354Q | TaT | CaG | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp2 | 354 | Y354F | tAt | tTt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 354 | Y354X | taT | taG | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 354 | Y354N | Tat | Aat | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 354 | Y354D | Tat | Gat | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 354 | Y354X | taT | taG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 354 | Y354W | tAT | tGG | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 354 | Y354V | TAT | GTG | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 354 | Y354D | Tat | Gat | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 354 | Y354H | Tat | Cat | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 354 | Y354F | tAt | tTt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 354 | Y354F | tAt | tTt | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | B.1.1.240 | 0.004695 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp2 | 354 | Y354D | Tat | Gat | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 354 | Y354F | tAt | tTt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 354 | Y354H | Tat | Cat | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 354 | Y354X | tAT | tGA | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | B.1.177.17 | 0.000821 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 354 | Y354X | taT | taG | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 354 | Y354H | Tat | Cat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 354 | Y354D | Tat | Gat | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp2 | 354 | Y354D | Tat | Gat | 1 | 1 | B.1.221.3 | 0.000833 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 354 | Y354H | Tat | Cat | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp2 | 354 | Y354F | tAt | tTt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | B.1.439 | 0.005917 |
ORF1ab/nsp2 | 354 | Y354X | taT | taA | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 354 | Y354R | TAT | AGA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 354 | Y354L | tAT | tTA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 354 | Y354S | TAT | AGC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 354 | Y354D | Tat | Gat | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 354 | Y354K | TaT | AaA | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 354 | Y354F | tAT | tTC | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp2 | 354 | Y354N | Tat | Aat | 1 | 1 | C.28 | 0.04 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp2 | 354 | Y354H | Tat | Cat | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | C.36.3 | 0.000567 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 354 | Y354F | tAt | tTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 354 | Y354Y | taT | taC | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp2 | 354 | Y354C | tAt | tGt | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp2 | 354 | Y354del | TAT | --- | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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