CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 346 | Q346H | Q526H | nonsyn | caG | caT | 809 | 771 | 0.953028 | 1841-1843 |
ORF1ab/nsp2 | 346 | Q346H | Q526H | nonsyn | caG | caC | 809 | 38 | 0.0469716 | 1841-1843 |
ORF1ab/nsp2 | 346 | Q346Q | Q526Q | syn | caG | caA | 189 | 189 | 1 | 1841-1843 |
ORF1ab/nsp2 | 346 | Q346R | Q526R | nonsyn | cAg | cGg | 179 | 179 | 1 | 1841-1843 |
ORF1ab/nsp2 | 346 | Q346K | Q526K | nonsyn | Cag | Aag | 59 | 57 | 0.966102 | 1841-1843 |
ORF1ab/nsp2 | 346 | Q346K | Q526K | nonsyn | CaG | AaA | 59 | 2 | 0.0338983 | 1841-1843 |
ORF1ab/nsp2 | 346 | Q346del | Q526del | del | CAG | --- | 54 | 54 | 1 | 1841-1843 |
ORF1ab/nsp2 | 346 | Q346X | Q526X | nonsyn | Cag | Tag | 23 | 22 | 0.956522 | 1841-1843 |
ORF1ab/nsp2 | 346 | Q346X | Q526X | nonsyn | CaG | TaA | 23 | 1 | 0.0434783 | 1841-1843 |
ORF1ab/nsp2 | 346 | Q346E | Q526E | nonsyn | Cag | Gag | 21 | 21 | 1 | 1841-1843 |
ORF1ab/nsp2 | 346 | Q346del1 | Q526del1 | del | caG | ca- | 13 | 8 | 0.615385 | 1841-1843 |
ORF1ab/nsp2 | 346 | Q346del1 | Q526del1 | del | cAg | c-g | 13 | 4 | 0.307692 | 1841-1843 |
ORF1ab/nsp2 | 346 | Q346del1 | Q526del1 | del | CAg | T-g | 13 | 1 | 0.0769231 | 1841-1843 |
ORF1ab/nsp2 | 346 | Q346V | Q526V | nonsyn | CAG | GTT | 9 | 7 | 0.777778 | 1841-1843 |
ORF1ab/nsp2 | 346 | Q346V | Q526V | nonsyn | CAG | GTA | 9 | 2 | 0.222222 | 1841-1843 |
ORF1ab/nsp2 | 346 | Q346L | Q526L | nonsyn | cAg | cTg | 5 | 4 | 0.8 | 1841-1843 |
ORF1ab/nsp2 | 346 | Q346L | Q526L | nonsyn | CAG | TTA | 5 | 1 | 0.2 | 1841-1843 |
ORF1ab/nsp2 | 346 | Q346P | Q526P | nonsyn | cAg | cCg | 4 | 2 | 0.5 | 1841-1843 |
ORF1ab/nsp2 | 346 | Q346P | Q526P | nonsyn | cAG | cCA | 4 | 1 | 0.25 | 1841-1843 |
ORF1ab/nsp2 | 346 | Q346P | Q526P | nonsyn | cAG | cCT | 4 | 1 | 0.25 | 1841-1843 |
ORF1ab/nsp2 | 346 | Q346T | Q526T | nonsyn | CAG | ACA | 2 | 1 | 0.5 | 1841-1843 |
ORF1ab/nsp2 | 346 | Q346T | Q526T | nonsyn | CAg | ACg | 2 | 1 | 0.5 | 1841-1843 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 771 | 809 | All | 0.000147 |
ORF1ab/nsp2 | 346 | Q346H | caG | caC | 38 | 809 | All | 0.000007 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 189 | 189 | All | 0.000036 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 179 | 179 | All | 0.000034 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 95 | 101 | B.1.617.2 | 0.000358 |
ORF1ab/nsp2 | 346 | Q346H | caG | caC | 6 | 101 | B.1.617.2 | 0.000023 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 68 | 68 | B.1.219 | 0.641509 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 59 | 61 | AY.4 | 0.000092 |
ORF1ab/nsp2 | 346 | Q346H | caG | caC | 2 | 61 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 346 | Q346K | Cag | Aag | 57 | 59 | All | 0.000011 |
ORF1ab/nsp2 | 346 | Q346K | CaG | AaA | 2 | 59 | All | 0 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 55 | 55 | AY.44 | 0.000335 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 54 | 54 | All | 0.00001 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 50 | 50 | B.1.1.7 | 0.000045 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 49 | 49 | AY.26 | 0.001387 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 40 | 40 | AY.43 | 0.000177 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 34 | 35 | AY.102 | 0.000901 |
ORF1ab/nsp2 | 346 | Q346H | caG | caC | 1 | 35 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 34 | 35 | B.1.1.7 | 0.00003 |
ORF1ab/nsp2 | 346 | Q346H | caG | caC | 1 | 35 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 346 | Q346K | Cag | Aag | 30 | 30 | AM.3 | 1 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 28 | 28 | B.1.282 | 0.41791 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 27 | 27 | AY.61 | 0.002829 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 26 | 26 | B.1.1.7 | 0.000023 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 25 | 25 | B.1.637 | 0.001827 |
ORF1ab/nsp2 | 346 | Q346X | Cag | Tag | 22 | 23 | All | 0.000004 |
ORF1ab/nsp2 | 346 | Q346X | CaG | TaA | 1 | 23 | All | 0 |
ORF1ab/nsp2 | 346 | Q346E | Cag | Gag | 21 | 21 | All | 0.000004 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 21 | 21 | AY.4 | 0.000033 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 18 | 18 | AY.27 | 0.001165 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 17 | 17 | AY.103 | 0.000106 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 17 | 17 | B.1.1.214 | 0.000943 |
ORF1ab/nsp2 | 346 | Q346H | caG | caC | 14 | 17 | B.1.36 | 0.002043 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 3 | 17 | B.1.36 | 0.000438 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 14 | 15 | B.1.1 | 0.000254 |
ORF1ab/nsp2 | 346 | Q346H | caG | caC | 1 | 15 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 15 | 15 | B.1.1.318 | 0.004526 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 15 | 15 | B.1.177 | 0.000198 |
ORF1ab/nsp2 | 346 | Q346del1 | caG | ca- | 8 | 13 | All | 0.000002 |
ORF1ab/nsp2 | 346 | Q346del1 | cAg | c-g | 4 | 13 | All | 0.000001 |
ORF1ab/nsp2 | 346 | Q346del1 | CAg | T-g | 1 | 13 | All | 0 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 13 | 13 | B.1.2 | 0.000114 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 13 | 13 | B.1.617.2 | 0.000049 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 12 | 12 | B.1.1.37 | 0.002314 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 12 | 12 | B.1.617.2 | 0.000045 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 11 | 11 | AY.25 | 0.000066 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 11 | 11 | AY.4.2 | 0.000239 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 11 | 11 | C.37 | 0.001277 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 10 | 10 | AY.103 | 0.000062 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 10 | 10 | B.1 | 0.000092 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 10 | 10 | B.1.1.519 | 0.000397 |
ORF1ab/nsp2 | 346 | Q346V | CAG | GTT | 7 | 9 | All | 0.000001 |
ORF1ab/nsp2 | 346 | Q346V | CAG | GTA | 2 | 9 | All | 0 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 9 | 9 | AY.6 | 0.00037 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 9 | 9 | B.1.160 | 0.000281 |
ORF1ab/nsp2 | 346 | Q346V | CAG | GTT | 6 | 8 | 0.333333 | |
ORF1ab/nsp2 | 346 | Q346V | CAG | GTA | 2 | 8 | 0.111111 | |
ORF1ab/nsp2 | 346 | Q346K | Cag | Aag | 7 | 8 | AY.43 | 0.000031 |
ORF1ab/nsp2 | 346 | Q346K | CaG | AaA | 1 | 8 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 8 | 8 | B.1.2 | 0.00007 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 7 | 7 | AY.3 | 0.00007 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 6 | 7 | AY.39 | 0.000148 |
ORF1ab/nsp2 | 346 | Q346H | caG | caC | 1 | 7 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 7 | 7 | B.1.311 | 0.001922 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp2 | 346 | Q346K | Cag | Aag | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 6 | 6 | B.1 | 0.000055 |
ORF1ab/nsp2 | 346 | Q346E | Cag | Gag | 6 | 6 | B.1.1.7 | 0.000005 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 6 | 6 | B.1.399 | 0.011605 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp2 | 346 | Q346L | cAg | cTg | 4 | 5 | All | 0.000001 |
ORF1ab/nsp2 | 346 | Q346L | CAG | TTA | 1 | 5 | All | 0 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 5 | 5 | AY.118 | 0.000313 |
ORF1ab/nsp2 | 346 | Q346K | Cag | Aag | 4 | 5 | B.1 | 0.000037 |
ORF1ab/nsp2 | 346 | Q346K | CaG | AaA | 1 | 5 | B.1 | 0.000009 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 5 | 5 | B.1.177 | 0.000066 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 5 | 5 | B.1.258 | 0.000333 |
ORF1ab/nsp2 | 346 | Q346P | cAg | cCg | 2 | 4 | All | 0 |
ORF1ab/nsp2 | 346 | Q346P | cAG | cCA | 1 | 4 | All | 0 |
ORF1ab/nsp2 | 346 | Q346P | cAG | cCT | 1 | 4 | All | 0 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 4 | 4 | B | 0.000511 |
ORF1ab/nsp2 | 346 | Q346X | Cag | Tag | 4 | 4 | B.1 | 0.000037 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 4 | 4 | B.1.2 | 0.000035 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 4 | 4 | B.1.243 | 0.000278 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 3 | 4 | B.1.351 | 0.000089 |
ORF1ab/nsp2 | 346 | Q346H | caG | caC | 1 | 4 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 4 | 4 | B.1.429 | 0.000094 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 4 | 4 | P.1 | 0.000063 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 3 | 3 | AY.108 | 0.003308 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 3 | 3 | AY.111 | 0.000549 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 3 | 3 | AY.25 | 0.000018 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 3 | 3 | B.1.1.311 | 0.001074 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 346 | Q346del1 | caG | ca- | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 3 | 3 | B.1.177 | 0.00004 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 3 | 3 | B.1.177.81 | 0.000568 |
ORF1ab/nsp2 | 346 | Q346X | Cag | Tag | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 3 | 3 | B.1.247 | 0.044776 |
ORF1ab/nsp2 | 346 | Q346E | Cag | Gag | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 3 | 3 | B.1.617.1 | 0.000387 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 3 | 3 | C.36.3 | 0.001702 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 3 | 3 | P.7 | 0.0131 |
ORF1ab/nsp2 | 346 | Q346T | CAG | ACA | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 346 | Q346T | CAg | ACg | 1 | 2 | All | 0 |
ORF1ab/nsp2 | 346 | Q346K | Cag | Aag | 2 | 2 | AM.4 | 0.007143 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 2 | 2 | AY.105 | 0.001286 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp2 | 346 | Q346H | caG | caC | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp2 | 346 | Q346X | CaG | TaA | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 346 | Q346X | Cag | Tag | 1 | 2 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 2 | 2 | AY.64 | 0.00119 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp2 | 346 | Q346H | caG | caC | 2 | 2 | AY.84 | 0.000875 |
ORF1ab/nsp2 | 346 | Q346H | caG | caC | 1 | 2 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 2 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 346 | Q346E | Cag | Gag | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp2 | 346 | Q346E | Cag | Gag | 2 | 2 | AY.99.2 | 0.000184 |
ORF1ab/nsp2 | 346 | Q346T | CAG | ACA | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp2 | 346 | Q346P | cAG | cCA | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp2 | 346 | Q346T | CAg | ACg | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp2 | 346 | Q346P | cAg | cCg | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 2 | 2 | B.1.1.371 | 0.020833 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 2 | 2 | B.1.1.58 | 0.010753 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp2 | 346 | Q346K | Cag | Aag | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 2 | 2 | B.1.160 | 0.000062 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 346 | Q346L | cAg | cTg | 2 | 2 | B.1.177.77 | 0.001452 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 2 | 2 | B.1.301 | 0.011834 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 2 | 2 | B.1.427 | 0.000101 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 2 | 2 | B.1.560 | 0.009259 |
ORF1ab/nsp2 | 346 | Q346del1 | caG | ca- | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 346 | Q346del1 | cAg | c-g | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 2 | 2 | B.1.621 | 0.000177 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 346 | Q346K | Cag | Aag | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp2 | 346 | Q346H | caG | caC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 346 | Q346E | Cag | Gag | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 346 | Q346X | Cag | Tag | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 346 | Q346del1 | cAg | c-g | 1 | 1 | AY.120.1 | 0.000321 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 346 | Q346X | Cag | Tag | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 346 | Q346K | Cag | Aag | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 346 | Q346del1 | caG | ca- | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 346 | Q346X | Cag | Tag | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 346 | Q346del1 | CAg | T-g | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 346 | Q346P | cAG | cCT | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp2 | 346 | Q346X | Cag | Tag | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp2 | 346 | Q346H | caG | caC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 346 | Q346X | Cag | Tag | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 1 | 1 | AY.4.1 | 0.000737 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 346 | Q346H | caG | caC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 346 | Q346del1 | cAg | c-g | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 346 | Q346L | CAG | TTA | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp2 | 346 | Q346E | Cag | Gag | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | AY.46.4 | 0.000165 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 346 | Q346E | Cag | Gag | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | AY.83 | 0.001724 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 346 | Q346del1 | caG | ca- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 346 | Q346H | caG | caC | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 346 | Q346L | cAg | cTg | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 346 | Q346del1 | caG | ca- | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 346 | Q346E | Cag | Gag | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 346 | Q346V | CAG | GTT | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 1 | 1 | B.1.1.222 | 0.000204 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | B.1.1.239 | 0.032258 |
ORF1ab/nsp2 | 346 | Q346K | Cag | Aag | 1 | 1 | B.1.1.261 | 0.008621 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | B.1.1.337 | 0.003597 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | B.1.1.354 | 0.004386 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp2 | 346 | Q346E | Cag | Gag | 1 | 1 | B.1.1.378 | 0.007299 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 1 | 1 | B.1.1.486 | 0.001577 |
ORF1ab/nsp2 | 346 | Q346X | Cag | Tag | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 346 | Q346L | cAg | cTg | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | B.1.1.99 | 0.02381 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | B.1.126 | 0.001276 |
ORF1ab/nsp2 | 346 | Q346K | Cag | Aag | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 346 | Q346X | Cag | Tag | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 346 | Q346E | Cag | Gag | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 1 | 1 | B.1.177.19 | 0.001431 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | B.1.177.23 | 0.003236 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | B.1.177.30 | 0.002513 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp2 | 346 | Q346K | Cag | Aag | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 346 | Q346del1 | cAg | c-g | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 346 | Q346H | caG | caC | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp2 | 346 | Q346X | Cag | Tag | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp2 | 346 | Q346P | cAg | cCg | 1 | 1 | B.1.258.3 | 0.001675 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 346 | Q346X | Cag | Tag | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | B.1.361 | 0.001289 |
ORF1ab/nsp2 | 346 | Q346E | Cag | Gag | 1 | 1 | B.1.375 | 0.00082 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp2 | 346 | Q346X | Cag | Tag | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | B.1.416 | 0.001269 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 346 | Q346H | caG | caC | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp2 | 346 | Q346X | Cag | Tag | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 346 | Q346X | Cag | Tag | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 346 | Q346K | Cag | Aag | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | B.1.91 | 0.002075 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | B.11 | 0.005128 |
ORF1ab/nsp2 | 346 | Q346R | cAg | cGg | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp2 | 346 | Q346del1 | caG | ca- | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp2 | 346 | Q346X | Cag | Tag | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 346 | Q346X | Cag | Tag | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 346 | Q346E | Cag | Gag | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 346 | Q346Q | caG | caA | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 346 | Q346H | caG | caT | 1 | 1 | P.2 | 0.000187 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 346 | Q346del | CAG | --- | 1 | 1 | Q.2 | 0.000613 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|