CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 339 & Codon = Agt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2339G339SG519SnonsynGgtAgt536175361711820-1822

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2339G339SGgtAgt5361753617All0.010255
ORF1ab/nsp2339G339SGgtAgt99319931AY.1030.061662
ORF1ab/nsp2339G339SGgtAgt68286828B.1.1.70.006113
ORF1ab/nsp2339G339SGgtAgt50185018AY.40.00781
ORF1ab/nsp2339G339SGgtAgt27572757AY.410.810406
ORF1ab/nsp2339G339SGgtAgt26912691B.1.617.20.010133
ORF1ab/nsp2339G339SGgtAgt20562056AY.7.10.231714
ORF1ab/nsp2339G339SGgtAgt18741874AY.440.011407
ORF1ab/nsp2339G339SGgtAgt18041804AY.620.786057
ORF1ab/nsp2339G339SGgtAgt16231623AY.30.016143
ORF1ab/nsp2339G339SGgtAgt14851485AY.430.006579
ORF1ab/nsp2339G339SGgtAgt12841284AY.98.10.062185
ORF1ab/nsp2339G339SGgtAgt12531253B.1.177.730.709513
ORF1ab/nsp2339G339SGgtAgt11121112AY.460.115737
ORF1ab/nsp2339G339SGgtAgt987987AY.250.005937
ORF1ab/nsp2339G339SGgtAgt716716B.1.1770.009428
ORF1ab/nsp2339G339SGgtAgt598598B.1.5260.014056
ORF1ab/nsp2339G339SGgtAgt543543AY.390.013418
ORF1ab/nsp2339G339SGgtAgt521521AY.240.224569
ORF1ab/nsp2339G339SGgtAgt424424B.1.1.1890.641452
ORF1ab/nsp2339G339SGgtAgt418418B.1.20.003681
ORF1ab/nsp2339G339SGgtAgt380380B.1.1.2940.481013
ORF1ab/nsp2339G339SGgtAgt339339AY.1020.008988
ORF1ab/nsp2339G339SGgtAgt323323AY.750.018095
ORF1ab/nsp2339G339SGgtAgt256256B.10.002345
ORF1ab/nsp2339G339SGgtAgt255255AY.1200.009481
ORF1ab/nsp2339G339SGgtAgt226226AY.4.20.004902
ORF1ab/nsp2339G339SGgtAgt217217AY.50.004481
ORF1ab/nsp2339G339SGgtAgt197197AV.10.994949
ORF1ab/nsp2339G339SGgtAgt193193AY.260.005464
ORF1ab/nsp2339G339SGgtAgt191191B.1.10.003465
ORF1ab/nsp2339G339SGgtAgt184184P.20.034341
ORF1ab/nsp2339G339SGgtAgt181181P.1.150.042054
ORF1ab/nsp2339G339SGgtAgt164164AY.130.026401
ORF1ab/nsp2339G339SGgtAgt160160AY.1170.013523
ORF1ab/nsp2339G339SGgtAgt159159P.10.002505
ORF1ab/nsp2339G339SGgtAgt153153AY.290.002413
ORF1ab/nsp2339G339SGgtAgt149149AY.60.006128
ORF1ab/nsp2339G339SGgtAgt136136B.1.4290.0032
ORF1ab/nsp2339G339SGgtAgt132132AY.1000.006073
ORF1ab/nsp2339G339SGgtAgt127127B.1.2340.016757
ORF1ab/nsp2339G339SGgtAgt120120AY.1180.007518
ORF1ab/nsp2339G339SGgtAgt120120AY.99.20.011059
ORF1ab/nsp2339G339SGgtAgt120120B.1.1.1700.149626
ORF1ab/nsp2339G339SGgtAgt111111AY.200.004314
ORF1ab/nsp2339G339SGgtAgt110110A.23.10.077465
ORF1ab/nsp2339G339SGgtAgt106106AY.1100.011945
ORF1ab/nsp2339G339SGgtAgt106106AY.1190.003743
ORF1ab/nsp2339G339SGgtAgt106106B.1.1.5190.004209
ORF1ab/nsp2339G339SGgtAgt105105B.1.1.3170.043228
ORF1ab/nsp2339G339SGgtAgt9797AY.330.006477
ORF1ab/nsp2339G339SGgtAgt9797B.1.1.4340.03381
ORF1ab/nsp2339G339SGgtAgt9090AY.360.013339
ORF1ab/nsp2339G339SGgtAgt8888AY.420.00354
ORF1ab/nsp2339G339SGgtAgt8181AY.610.008487
ORF1ab/nsp2339G339SGgtAgt7979AY.46.60.005704
ORF1ab/nsp2339G339SGgtAgt7676B.1.6210.006727
ORF1ab/nsp2339G339SGgtAgt7373AY.470.002271
ORF1ab/nsp2339G339SGgtAgt7373AY.9.20.002681
ORF1ab/nsp2339G339SGgtAgt7272B.1.3510.00214
ORF1ab/nsp2339G339SGgtAgt7070AY.230.004882
ORF1ab/nsp2339G339SGgtAgt7070AY.90.004732
ORF1ab/nsp2339G339SGgtAgt7070B.1.6370.005115
ORF1ab/nsp2339G339SGgtAgt6969AY.160.026196
ORF1ab/nsp2339G339SGgtAgt6969AY.340.006691
ORF1ab/nsp2339G339SGgtAgt6565AY.140.005721
ORF1ab/nsp2339G339SGgtAgt6565B.6.60.057778
ORF1ab/nsp2339G339SGgtAgt6363AY.940.027888
ORF1ab/nsp2339G339SGgtAgt6060AY.700.01251
ORF1ab/nsp2339G339SGgtAgt5858B.1.1.2140.003217
ORF1ab/nsp2339G339SGgtAgt5757AY.980.004503
ORF1ab/nsp2339G339SGgtAgt5656AY.450.006814
ORF1ab/nsp2339G339SGgtAgt5555AY.1140.012711
ORF1ab/nsp2339G339SGgtAgt5353P.30.08453
ORF1ab/nsp2339G339SGgtAgt5252AY.39.10.00206
ORF1ab/nsp2339G339SGgtAgt5050B.1.360.007295
ORF1ab/nsp2339G339SGgtAgt5050B.1.4320.561798
ORF1ab/nsp2339G339SGgtAgt4949C.370.005687
ORF1ab/nsp2339G339SGgtAgt4848B.1.1050.461538
ORF1ab/nsp2339G339SGgtAgt4646AY.3.10.003922
ORF1ab/nsp2339G339SGgtAgt4545AY.4.2.10.006704
ORF1ab/nsp2339G339SGgtAgt4545AY.4.50.004837
ORF1ab/nsp2339G339SGgtAgt4545B.1.1.280.014006
ORF1ab/nsp2339G339SGgtAgt4141B.400.014936
ORF1ab/nsp2339G339SGgtAgt4040AY.850.017087
ORF1ab/nsp2339G339SGgtAgt3838B.1.177.150.023975
ORF1ab/nsp2339G339SGgtAgt3737AY.1060.012391
ORF1ab/nsp2339G339SGgtAgt3636AY.75.10.006491
ORF1ab/nsp2339G339SGgtAgt3434AY.1130.004841
ORF1ab/nsp2339G339SGgtAgt3434B0.004346
ORF1ab/nsp2339G339SGgtAgt3434B.1.36.80.034
ORF1ab/nsp2339G339SGgtAgt3333AY.270.002136
ORF1ab/nsp2339G339SGgtAgt3333AY.5.30.011134
ORF1ab/nsp2339G339SGgtAgt3232B.1.2580.00213
ORF1ab/nsp2339G339SGgtAgt3131B.1.1.370.005979
ORF1ab/nsp2339G339SGgtAgt3131B.1.1600.000967
ORF1ab/nsp2339G339SGgtAgt3131B.1.4270.001565
ORF1ab/nsp2339G339SGgtAgt3131B.1.5960.002701
ORF1ab/nsp2339G339SGgtAgt2929AY.1160.008317
ORF1ab/nsp2339G339SGgtAgt2828B.1.36.180.011765
ORF1ab/nsp2339G339SGgtAgt2727AY.4.40.011047
ORF1ab/nsp2339G339SGgtAgt2727AY.480.012558
ORF1ab/nsp2339G339SGgtAgt2727B.1.2430.001879
ORF1ab/nsp2339G339SGgtAgt2727B.1.5750.008192
ORF1ab/nsp2339G339SGgtAgt2727Q.80.004453
ORF1ab/nsp2339G339SGgtAgt2525AY.1210.003383
ORF1ab/nsp2339G339SGgtAgt2525B.1.1.3180.007544
ORF1ab/nsp2339G339SGgtAgt2525B.1.3690.007131
ORF1ab/nsp2339G339SGgtAgt2525N.30.145349
ORF1ab/nsp2339G339SGgtAgt2424AY.530.006901
ORF1ab/nsp2339G339SGgtAgt2424B.1.3190.073171
ORF1ab/nsp2339G339SGgtAgt2424B.1.6280.008457
ORF1ab/nsp2339G339SGgtAgt2222AY.46.40.003619
ORF1ab/nsp2339G339SGgtAgt2222AY.490.070288
ORF1ab/nsp2339G339SGgtAgt2222B.1.1.2550.066667
ORF1ab/nsp2339G339SGgtAgt2222P.1.120.010649
ORF1ab/nsp2339G339SGgtAgt2020AY.370.006321
ORF1ab/nsp2339G339SGgtAgt2020B.1.2210.001421
ORF1ab/nsp2339G339SGgtAgt2020B.1.351.30.017528
ORF1ab/nsp2339G339SGgtAgt2020B.1.466.20.007825
ORF1ab/nsp2339G339SGgtAgt1919AY.590.010064
ORF1ab/nsp2339G339SGgtAgt1818AY.46.20.011436
ORF1ab/nsp2339G339SGgtAgt1818AY.660.019251
ORF1ab/nsp2339G339SGgtAgt1818P.1.40.017578
ORF1ab/nsp2339G339SGgtAgt1717A.2.5.10.081731
ORF1ab/nsp2339G339SGgtAgt1717B.1.36.290.008795
ORF1ab/nsp2339G339SGgtAgt1616AY.116.10.004983
ORF1ab/nsp2339G339SGgtAgt1616B.1.1.10.005227
ORF1ab/nsp2339G339SGgtAgt1616B.1.177.70.002638
ORF1ab/nsp2339G339SGgtAgt1515AY.1090.011095
ORF1ab/nsp2339G339SGgtAgt1515AY.300.005936
ORF1ab/nsp2339G339SGgtAgt1515AY.34.10.007649
ORF1ab/nsp2339G339SGgtAgt1515B.1.1.500.010183
ORF1ab/nsp2339G339SGgtAgt1414AY.540.001335
ORF1ab/nsp2339G339SGgtAgt1414AY.740.001619
ORF1ab/nsp2339G339SGgtAgt1414B.1.1.3970.031532
ORF1ab/nsp2339G339SGgtAgt1414B.1.177.650.009315
ORF1ab/nsp2339G339SGgtAgt1414B.1.5250.001584
ORF1ab/nsp2339G339SGgtAgt1414P.1.100.003773
ORF1ab/nsp2339G339SGgtAgt1313AY.1010.006376
ORF1ab/nsp2339G339SGgtAgt1313AY.1050.00836
ORF1ab/nsp2339G339SGgtAgt1313B.1.1.3060.005699
ORF1ab/nsp2339G339SGgtAgt1313M.31
ORF1ab/nsp2339G339SGgtAgt1212AY.10.004749
ORF1ab/nsp2339G339SGgtAgt1212AY.5.20.029557
ORF1ab/nsp2339G339SGgtAgt1212AY.670.005571
ORF1ab/nsp2339G339SGgtAgt1212AY.820.016282
ORF1ab/nsp2339G339SGgtAgt1212B.1.2400.002587
ORF1ab/nsp2339G339SGgtAgt1212B.1.4090.009375
ORF1ab/nsp2339G339SGgtAgt1212C.160.012725
ORF1ab/nsp2339G339SGgtAgt1212Q.10.001516
ORF1ab/nsp2339G339SGgtAgt1111AY.690.002053
ORF1ab/nsp2339G339SGgtAgt1111AY.730.007319
ORF1ab/nsp2339G339SGgtAgt1111M.20.916667
ORF1ab/nsp2339G339SGgtAgt1111P.1.10.003494
ORF1ab/nsp2339G339SGgtAgt1010AY.16.10.004699
ORF1ab/nsp2339G339SGgtAgt1010AY.46.10.010267
ORF1ab/nsp2339G339SGgtAgt1010AY.920.002873
ORF1ab/nsp2339G339SGgtAgt1010B.1.1.1960.057143
ORF1ab/nsp2339G339SGgtAgt1010B.1.3110.002746
ORF1ab/nsp2339G339SGgtAgt1010B.1.6200.009461
ORF1ab/nsp2339G339SGgtAgt99AY.1070.004194
ORF1ab/nsp2339G339SGgtAgt99AY.1110.001648
ORF1ab/nsp2339G339SGgtAgt99AY.190.010262
ORF1ab/nsp2339G339SGgtAgt99AY.510.008182
ORF1ab/nsp2339G339SGgtAgt99AY.550.008257
ORF1ab/nsp2339G339SGgtAgt99AY.680.002464
ORF1ab/nsp2339G339SGgtAgt99B.1.214.30.064286
ORF1ab/nsp2339G339SGgtAgt99B.1.221.10.026163
ORF1ab/nsp2339G339SGgtAgt99B.1.258.110.003567
ORF1ab/nsp2339G339SGgtAgt99B.1.258.170.000936
ORF1ab/nsp2339G339SGgtAgt99B.1.3090.428571
ORF1ab/nsp2339G339SGgtAgt99B.1.3610.011598
ORF1ab/nsp2339G339SGgtAgt99B.1.4040.011719
ORF1ab/nsp2339G339SGgtAgt99B.1.5090.007792
ORF1ab/nsp2339G339SGgtAgt99B.1.617.10.001161
ORF1ab/nsp2339G339SGgtAgt99P.40.034221
ORF1ab/nsp2339G339SGgtAgt88AY.120.2.10.003986
ORF1ab/nsp2339G339SGgtAgt88AY.380.003994
ORF1ab/nsp2339G339SGgtAgt88AY.46.50.001587
ORF1ab/nsp2339G339SGgtAgt88AY.560.012841
ORF1ab/nsp2339G339SGgtAgt88B.1.1.2220.001632
ORF1ab/nsp2339G339SGgtAgt88B.1.2410.006494
ORF1ab/nsp2339G339SGgtAgt88P.1.140.000382
ORF1ab/nsp2339G339SGgtAgt88P.1.70.002554
ORF1ab/nsp2339G339SGgtAgt77A0.002709
ORF1ab/nsp2339G339SGgtAgt77AY.1040.013889
ORF1ab/nsp2339G339SGgtAgt77AY.120.20.008997
ORF1ab/nsp2339G339SGgtAgt77AY.70.001372
ORF1ab/nsp2339G339SGgtAgt77AY.840.003062
ORF1ab/nsp2339G339SGgtAgt77B.1.1460.029661
ORF1ab/nsp2339G339SGgtAgt77B.1.2790.003595
ORF1ab/nsp2339G339SGgtAgt77P.1.60.013619
ORF1ab/nsp2339G339SGgtAgt66AY.1080.006615
ORF1ab/nsp2339G339SGgtAgt66AY.120.001896
ORF1ab/nsp2339G339SGgtAgt66AY.20.002137
ORF1ab/nsp2339G339SGgtAgt66AY.29.10.001323
ORF1ab/nsp2339G339SGgtAgt66AY.5.40.00166
ORF1ab/nsp2339G339SGgtAgt66AY.650.003198
ORF1ab/nsp2339G339SGgtAgt66AY.710.00285
ORF1ab/nsp2339G339SGgtAgt66AY.9.10.000502
ORF1ab/nsp2339G339SGgtAgt66B.1.1.3540.026316
ORF1ab/nsp2339G339SGgtAgt66B.1.177.520.010545
ORF1ab/nsp2339G339SGgtAgt66B.1.177.830.008889
ORF1ab/nsp2339G339SGgtAgt66B.1.2320.003224
ORF1ab/nsp2339G339SGgtAgt66B.1.351.20.001815
ORF1ab/nsp2339G339SGgtAgt66B.1.5950.001566
ORF1ab/nsp2339G339SGgtAgt55A.2.50.002495
ORF1ab/nsp2339G339SGgtAgt55A.270.008278
ORF1ab/nsp2339G339SGgtAgt55AY.100.00265
ORF1ab/nsp2339G339SGgtAgt55AY.220.01046
ORF1ab/nsp2339G339SGgtAgt55AY.320.002662
ORF1ab/nsp2339G339SGgtAgt55AY.600.00469
ORF1ab/nsp2339G339SGgtAgt55B.1.1.1290.045872
ORF1ab/nsp2339G339SGgtAgt55B.1.1.330.002104
ORF1ab/nsp2339G339SGgtAgt55B.1.1.4860.007886
ORF1ab/nsp2339G339SGgtAgt55B.1.1.630.001929
ORF1ab/nsp2339G339SGgtAgt55B.1.177.860.000917
ORF1ab/nsp2339G339SGgtAgt55B.1.3910.005637
ORF1ab/nsp2339G339SGgtAgt55B.1.5680.005556
ORF1ab/nsp2339G339SGgtAgt55B.580.05102
ORF1ab/nsp2339G339SGgtAgt55D.20.000375
ORF1ab/nsp2339G339SGgtAgt44A.10.001127
ORF1ab/nsp2339G339SGgtAgt44AY.120.10.001284
ORF1ab/nsp2339G339SGgtAgt44AY.280.007561
ORF1ab/nsp2339G339SGgtAgt44AY.520.003257
ORF1ab/nsp2339G339SGgtAgt44AY.580.00363
ORF1ab/nsp2339G339SGgtAgt44AY.640.002381
ORF1ab/nsp2339G339SGgtAgt44AY.720.005442
ORF1ab/nsp2339G339SGgtAgt44AY.860.00332
ORF1ab/nsp2339G339SGgtAgt44AY.910.002922
ORF1ab/nsp2339G339SGgtAgt44AY.990.004197
ORF1ab/nsp2339G339SGgtAgt44B.1.1.2160.003562
ORF1ab/nsp2339G339SGgtAgt44B.1.1.3480.003185
ORF1ab/nsp2339G339SGgtAgt44B.1.1.4160.00362
ORF1ab/nsp2339G339SGgtAgt44B.1.177.170.003284
ORF1ab/nsp2339G339SGgtAgt44B.1.177.210.000306
ORF1ab/nsp2339G339SGgtAgt44B.1.177.600.000874
ORF1ab/nsp2339G339SGgtAgt44B.1.2200.043478
ORF1ab/nsp2339G339SGgtAgt44B.1.4230.040816
ORF1ab/nsp2339G339SGgtAgt44B.1.4700.005618
ORF1ab/nsp2339G339SGgtAgt44B.1.4970.001259
ORF1ab/nsp2339G339SGgtAgt44B.1.5640.001704
ORF1ab/nsp2339G339SGgtAgt44B.1.5800.01626
ORF1ab/nsp2339G339SGgtAgt44B.1.621.10.002023
ORF1ab/nsp2339G339SGgtAgt44P.1.170.000647
ORF1ab/nsp2339G339SGgtAgt33AA.10.021739
ORF1ab/nsp2339G339SGgtAgt33AD.20.000657
ORF1ab/nsp2339G339SGgtAgt33AY.310.055556
ORF1ab/nsp2339G339SGgtAgt33AY.350.000699
ORF1ab/nsp2339G339SGgtAgt33AY.4.10.002212
ORF1ab/nsp2339G339SGgtAgt33AY.770.003382
ORF1ab/nsp2339G339SGgtAgt33AY.930.000819
ORF1ab/nsp2339G339SGgtAgt33AY.99.10.004658
ORF1ab/nsp2339G339SGgtAgt33B.1.1.1210.007282
ORF1ab/nsp2339G339SGgtAgt33B.1.1.1480.026316
ORF1ab/nsp2339G339SGgtAgt33B.1.1.2010.073171
ORF1ab/nsp2339G339SGgtAgt33B.1.1.2200.005576
ORF1ab/nsp2339G339SGgtAgt33B.1.1.2360.02069
ORF1ab/nsp2339G339SGgtAgt33B.1.1.250.001706
ORF1ab/nsp2339G339SGgtAgt33B.1.1.2840.000322
ORF1ab/nsp2339G339SGgtAgt33B.1.1.4090.008499
ORF1ab/nsp2339G339SGgtAgt33B.1.1.540.009063
ORF1ab/nsp2339G339SGgtAgt33B.1.1.700.001023
ORF1ab/nsp2339G339SGgtAgt33B.1.1260.003827
ORF1ab/nsp2339G339SGgtAgt33B.1.160.200.026786
ORF1ab/nsp2339G339SGgtAgt33B.1.177.160.001993
ORF1ab/nsp2339G339SGgtAgt33B.1.177.440.001557
ORF1ab/nsp2339G339SGgtAgt33B.1.2390.003663
ORF1ab/nsp2339G339SGgtAgt33B.1.3370.01676
ORF1ab/nsp2339G339SGgtAgt33B.1.36.20.032258
ORF1ab/nsp2339G339SGgtAgt33B.1.36.310.005254
ORF1ab/nsp2339G339SGgtAgt33B.1.3750.002459
ORF1ab/nsp2339G339SGgtAgt33B.1.5650.002431
ORF1ab/nsp2339G339SGgtAgt33B.1.5740.006452
ORF1ab/nsp2339G339SGgtAgt33B.1.5990.010949
ORF1ab/nsp2339G339SGgtAgt33B.1.617.30.008955
ORF1ab/nsp2339G339SGgtAgt22A.30.004193
ORF1ab/nsp2339G339SGgtAgt22A.90.090909
ORF1ab/nsp2339G339SGgtAgt22AE.80.000978
ORF1ab/nsp2339G339SGgtAgt22AY.23.10.000835
ORF1ab/nsp2339G339SGgtAgt22AY.630.000774
ORF1ab/nsp2339G339SGgtAgt22AY.780.003082
ORF1ab/nsp2339G339SGgtAgt22AY.880.001768
ORF1ab/nsp2339G339SGgtAgt22B.1.1.100.00223
ORF1ab/nsp2339G339SGgtAgt22B.1.1.1410.004024
ORF1ab/nsp2339G339SGgtAgt22B.1.1.2580.006515
ORF1ab/nsp2339G339SGgtAgt22B.1.1.2770.001517
ORF1ab/nsp2339G339SGgtAgt22B.1.1.3080.023529
ORF1ab/nsp2339G339SGgtAgt22B.1.1.3160.00185
ORF1ab/nsp2339G339SGgtAgt22B.1.1.3260.003521
ORF1ab/nsp2339G339SGgtAgt22B.1.1.3720.001377
ORF1ab/nsp2339G339SGgtAgt22B.1.1.3750.02381
ORF1ab/nsp2339G339SGgtAgt22B.1.1.3890.012121
ORF1ab/nsp2339G339SGgtAgt22B.1.1.390.001019
ORF1ab/nsp2339G339SGgtAgt22B.1.1.440.004819
ORF1ab/nsp2339G339SGgtAgt22B.1.1390.001466
ORF1ab/nsp2339G339SGgtAgt22B.1.1430.042553
ORF1ab/nsp2339G339SGgtAgt22B.1.177.190.002861
ORF1ab/nsp2339G339SGgtAgt22B.1.177.580.002663
ORF1ab/nsp2339G339SGgtAgt22B.1.177.720.00678
ORF1ab/nsp2339G339SGgtAgt22B.1.177.750.002081
ORF1ab/nsp2339G339SGgtAgt22B.1.30.005236
ORF1ab/nsp2339G339SGgtAgt22B.1.36.170.000988
ORF1ab/nsp2339G339SGgtAgt22B.1.3890.002004
ORF1ab/nsp2339G339SGgtAgt22B.1.3960.001411
ORF1ab/nsp2339G339SGgtAgt22B.1.4000.000858
ORF1ab/nsp2339G339SGgtAgt22B.1.4050.024691
ORF1ab/nsp2339G339SGgtAgt22B.1.4220.001625
ORF1ab/nsp2339G339SGgtAgt22B.1.4450.023529
ORF1ab/nsp2339G339SGgtAgt22B.1.5440.012048
ORF1ab/nsp2339G339SGgtAgt22B.1.5610.000794
ORF1ab/nsp2339G339SGgtAgt22B.1.6090.000959
ORF1ab/nsp2339G339SGgtAgt22B.1.6230.001073
ORF1ab/nsp2339G339SGgtAgt22B.1.6360.013423
ORF1ab/nsp2339G339SGgtAgt22B.60.00182
ORF1ab/nsp2339G339SGgtAgt22C.140.008658
ORF1ab/nsp2339G339SGgtAgt22C.300.003454
ORF1ab/nsp2339G339SGgtAgt22N.50.003534
ORF1ab/nsp2339G339SGgtAgt22Q.40.00091
ORF1ab/nsp2339G339SGgtAgt11A.150.015873
ORF1ab/nsp2339G339SGgtAgt11A.20.000662
ORF1ab/nsp2339G339SGgtAgt11A.2.40.003367
ORF1ab/nsp2339G339SGgtAgt11A.210.00277
ORF1ab/nsp2339G339SGgtAgt11A.280.002646
ORF1ab/nsp2339G339SGgtAgt11A.50.001923
ORF1ab/nsp2339G339SGgtAgt11AE.20.058824
ORF1ab/nsp2339G339SGgtAgt11AL.10.012987
ORF1ab/nsp2339G339SGgtAgt11AT.10.005128
ORF1ab/nsp2339G339SGgtAgt11AY.110.001339
ORF1ab/nsp2339G339SGgtAgt11AY.180.010101
ORF1ab/nsp2339G339SGgtAgt11AY.4.30.000842
ORF1ab/nsp2339G339SGgtAgt11AY.400.000964
ORF1ab/nsp2339G339SGgtAgt11AY.500.000799
ORF1ab/nsp2339G339SGgtAgt11AY.570.000656
ORF1ab/nsp2339G339SGgtAgt11AY.790.001211
ORF1ab/nsp2339G339SGgtAgt11AY.810.001992
ORF1ab/nsp2339G339SGgtAgt11AY.830.001724
ORF1ab/nsp2339G339SGgtAgt11AY.890.004902
ORF1ab/nsp2339G339SGgtAgt11AY.9.2.10.001976
ORF1ab/nsp2339G339SGgtAgt11AY.91.10.004065
ORF1ab/nsp2339G339SGgtAgt11AY.970.001701
ORF1ab/nsp2339G339SGgtAgt11AZ.20.000821
ORF1ab/nsp2339G339SGgtAgt11B.1.1.1010.01
ORF1ab/nsp2339G339SGgtAgt11B.1.1.1180.010204
ORF1ab/nsp2339G339SGgtAgt11B.1.1.130.035714
ORF1ab/nsp2339G339SGgtAgt11B.1.1.1320.014925
ORF1ab/nsp2339G339SGgtAgt11B.1.1.1380.006061
ORF1ab/nsp2339G339SGgtAgt11B.1.1.1440.028571
ORF1ab/nsp2339G339SGgtAgt11B.1.1.1710.003676
ORF1ab/nsp2339G339SGgtAgt11B.1.1.1740.003378
ORF1ab/nsp2339G339SGgtAgt11B.1.1.1760.000439
ORF1ab/nsp2339G339SGgtAgt11B.1.1.1920.002309
ORF1ab/nsp2339G339SGgtAgt11B.1.1.1980.001468
ORF1ab/nsp2339G339SGgtAgt11B.1.1.2310.003096
ORF1ab/nsp2339G339SGgtAgt11B.1.1.2400.004695
ORF1ab/nsp2339G339SGgtAgt11B.1.1.2410.00207
ORF1ab/nsp2339G339SGgtAgt11B.1.1.2530.002506
ORF1ab/nsp2339G339SGgtAgt11B.1.1.2690.001353
ORF1ab/nsp2339G339SGgtAgt11B.1.1.2890.002083
ORF1ab/nsp2339G339SGgtAgt11B.1.1.2900.018182
ORF1ab/nsp2339G339SGgtAgt11B.1.1.2910.000742
ORF1ab/nsp2339G339SGgtAgt11B.1.1.2960.018182
ORF1ab/nsp2339G339SGgtAgt11B.1.1.3030.002762
ORF1ab/nsp2339G339SGgtAgt11B.1.1.310.066667
ORF1ab/nsp2339G339SGgtAgt11B.1.1.3690.000446
ORF1ab/nsp2339G339SGgtAgt11B.1.1.3740.002375
ORF1ab/nsp2339G339SGgtAgt11B.1.1.3770.001381
ORF1ab/nsp2339G339SGgtAgt11B.1.1.3980.003226
ORF1ab/nsp2339G339SGgtAgt11B.1.1.4040.015873
ORF1ab/nsp2339G339SGgtAgt11B.1.1.4120.007634
ORF1ab/nsp2339G339SGgtAgt11B.1.1.4190.007407
ORF1ab/nsp2339G339SGgtAgt11B.1.1.4200.001006
ORF1ab/nsp2339G339SGgtAgt11B.1.1.4230.0625
ORF1ab/nsp2339G339SGgtAgt11B.1.1.4270.142857
ORF1ab/nsp2339G339SGgtAgt11B.1.1.4290.004608
ORF1ab/nsp2339G339SGgtAgt11B.1.1.4320.001266
ORF1ab/nsp2339G339SGgtAgt11B.1.1.4350.034483
ORF1ab/nsp2339G339SGgtAgt11B.1.1.4360.025641
ORF1ab/nsp2339G339SGgtAgt11B.1.1.4670.019231
ORF1ab/nsp2339G339SGgtAgt11B.1.1.4870.005587
ORF1ab/nsp2339G339SGgtAgt11B.1.1.5070.008696
ORF1ab/nsp2339G339SGgtAgt11B.1.1.5180.006329
ORF1ab/nsp2339G339SGgtAgt11B.1.1.670.004566
ORF1ab/nsp2339G339SGgtAgt11B.1.1040.00369
ORF1ab/nsp2339G339SGgtAgt11B.1.1100.004525
ORF1ab/nsp2339G339SGgtAgt11B.1.110.30.000718
ORF1ab/nsp2339G339SGgtAgt11B.1.1170.0125
ORF1ab/nsp2339G339SGgtAgt11B.1.1400.018868
ORF1ab/nsp2339G339SGgtAgt11B.1.1580.02381
ORF1ab/nsp2339G339SGgtAgt11B.1.177.100.000878
ORF1ab/nsp2339G339SGgtAgt11B.1.177.270.009434
ORF1ab/nsp2339G339SGgtAgt11B.1.177.40.000211
ORF1ab/nsp2339G339SGgtAgt11B.1.177.430.001477
ORF1ab/nsp2339G339SGgtAgt11B.1.177.460.000918
ORF1ab/nsp2339G339SGgtAgt11B.1.177.470.012987
ORF1ab/nsp2339G339SGgtAgt11B.1.177.540.000606
ORF1ab/nsp2339G339SGgtAgt11B.1.177.80.000752
ORF1ab/nsp2339G339SGgtAgt11B.1.177.800.001912
ORF1ab/nsp2339G339SGgtAgt11B.1.177.810.000189
ORF1ab/nsp2339G339SGgtAgt11B.1.1790.003759
ORF1ab/nsp2339G339SGgtAgt11B.1.1890.004292
ORF1ab/nsp2339G339SGgtAgt11B.1.1950.005025
ORF1ab/nsp2339G339SGgtAgt11B.1.214.20.0006
ORF1ab/nsp2339G339SGgtAgt11B.1.220.001318
ORF1ab/nsp2339G339SGgtAgt11B.1.2230.002778
ORF1ab/nsp2339G339SGgtAgt11B.1.2350.002519
ORF1ab/nsp2339G339SGgtAgt11B.1.2360.002053
ORF1ab/nsp2339G339SGgtAgt11B.1.2370.004975
ORF1ab/nsp2339G339SGgtAgt11B.1.258.100.011364
ORF1ab/nsp2339G339SGgtAgt11B.1.258.140.00098
ORF1ab/nsp2339G339SGgtAgt11B.1.258.40.003448
ORF1ab/nsp2339G339SGgtAgt11B.1.2650.001271
ORF1ab/nsp2339G339SGgtAgt11B.1.2840.013158
ORF1ab/nsp2339G339SGgtAgt11B.1.2910.019231
ORF1ab/nsp2339G339SGgtAgt11B.1.3200.001245
ORF1ab/nsp2339G339SGgtAgt11B.1.3290.000608
ORF1ab/nsp2339G339SGgtAgt11B.1.3330.010526
ORF1ab/nsp2339G339SGgtAgt11B.1.3490.000715
ORF1ab/nsp2339G339SGgtAgt11B.1.36.220.001208
ORF1ab/nsp2339G339SGgtAgt11B.1.36.260.002857
ORF1ab/nsp2339G339SGgtAgt11B.1.3990.001934
ORF1ab/nsp2339G339SGgtAgt11B.1.4130.004255
ORF1ab/nsp2339G339SGgtAgt11B.1.415.10.007576
ORF1ab/nsp2339G339SGgtAgt11B.1.416.10.001563
ORF1ab/nsp2339G339SGgtAgt11B.1.4240.008065
ORF1ab/nsp2339G339SGgtAgt11B.1.4280.00102
ORF1ab/nsp2339G339SGgtAgt11B.1.4530.003236
ORF1ab/nsp2339G339SGgtAgt11B.1.4560.003268
ORF1ab/nsp2339G339SGgtAgt11B.1.4800.002488
ORF1ab/nsp2339G339SGgtAgt11B.1.4980.020408
ORF1ab/nsp2339G339SGgtAgt11B.1.4990.00105
ORF1ab/nsp2339G339SGgtAgt11B.1.5010.007353
ORF1ab/nsp2339G339SGgtAgt11B.1.5300.007143
ORF1ab/nsp2339G339SGgtAgt11B.1.5380.008065
ORF1ab/nsp2339G339SGgtAgt11B.1.5600.00463
ORF1ab/nsp2339G339SGgtAgt11B.1.5670.003333
ORF1ab/nsp2339G339SGgtAgt11B.1.5720.025
ORF1ab/nsp2339G339SGgtAgt11B.1.5760.000907
ORF1ab/nsp2339G339SGgtAgt11B.1.5820.000491
ORF1ab/nsp2339G339SGgtAgt11B.1.596.10.009346
ORF1ab/nsp2339G339SGgtAgt11B.1.6010.030303
ORF1ab/nsp2339G339SGgtAgt11B.1.6040.017241
ORF1ab/nsp2339G339SGgtAgt11B.1.6190.000871
ORF1ab/nsp2339G339SGgtAgt11B.1.6250.002353
ORF1ab/nsp2339G339SGgtAgt11B.1.6270.00202
ORF1ab/nsp2339G339SGgtAgt11B.290.003509
ORF1ab/nsp2339G339SGgtAgt11B.30.000831
ORF1ab/nsp2339G339SGgtAgt11B.410.008
ORF1ab/nsp2339G339SGgtAgt11C.1.20.004255
ORF1ab/nsp2339G339SGgtAgt11C.320.023256
ORF1ab/nsp2339G339SGgtAgt11C.40.01
ORF1ab/nsp2339G339SGgtAgt11N.40.004255
ORF1ab/nsp2339G339SGgtAgt11P.1.20.001156
ORF1ab/nsp2339G339SGgtAgt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.