CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 339 & Codon = -gt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2339G339del1G519del1delGgt-gt777711820-1822

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2339G339del1Ggt-gt7777All0.000015
ORF1ab/nsp2339G339del1Ggt-gt5252B.1.1.70.000047
ORF1ab/nsp2339G339del1Ggt-gt55AY.440.00003
ORF1ab/nsp2339G339del1Ggt-gt33AY.1030.000019
ORF1ab/nsp2339G339del1Ggt-gt22AY.120.10.000642
ORF1ab/nsp2339G339del1Ggt-gt22AY.30.00002
ORF1ab/nsp2339G339del1Ggt-gt22AY.620.000871
ORF1ab/nsp2339G339del1Ggt-gt22B.1.6210.000177
ORF1ab/nsp2339G339del1Ggt-gt11AY.1010.00049
ORF1ab/nsp2339G339del1Ggt-gt11AY.250.000006
ORF1ab/nsp2339G339del1Ggt-gt11AY.430.000004
ORF1ab/nsp2339G339del1Ggt-gt11AY.470.000031
ORF1ab/nsp2339G339del1Ggt-gt11B.1.1.1890.001513
ORF1ab/nsp2339G339del1Ggt-gt11B.1.177.540.000606
ORF1ab/nsp2339G339del1Ggt-gt11B.1.617.20.000004
ORF1ab/nsp2339G339del1Ggt-gt11B.1.6330.041667
ORF1ab/nsp2339G339del1Ggt-gt11C.370.000116