CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 336 & Codon = gTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2336A336VA516VnonsyngCtgTt446344570.9986561811-1813

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2336A336VgCtgTt44574463All0.000852
ORF1ab/nsp2336A336VgCtgTt948948B.1.1.70.000849
ORF1ab/nsp2336A336VgCtgTt337337AY.40.000525
ORF1ab/nsp2336A336VgCtgTt251251B.10.002299
ORF1ab/nsp2336A336VgCtgTt213213AY.430.000944
ORF1ab/nsp2336A336VgCtgTt207207AY.410.060847
ORF1ab/nsp2336A336VgCtgTt206206B.1.20.001814
ORF1ab/nsp2336A336VgCtgTt202202B.1.1.3970.454955
ORF1ab/nsp2336A336VgCtgTt180180B.1.1.2840.019332
ORF1ab/nsp2336A336VgCtgTt163163B.1.617.20.000614
ORF1ab/nsp2336A336VgCtgTt137137B.1.595.41
ORF1ab/nsp2336A336VgCtgTt121121B.1.10.002195
ORF1ab/nsp2336A336VgCtgTt104104AY.440.000633
ORF1ab/nsp2336A336VgCtgTt9292P.10.001449
ORF1ab/nsp2336A336VgCtgTt8080AY.250.000481
ORF1ab/nsp2336A336VgCtgTt6565AY.1030.000404
ORF1ab/nsp2336A336VgCtgTt6565B.1.4290.001529
ORF1ab/nsp2336A336VgCtgTt5757B.1.1770.000751
ORF1ab/nsp2336A336VgCtgTt5656AY.290.000883
ORF1ab/nsp2336A336VgCtgTt4848B.1.2430.00334
ORF1ab/nsp2336A336VgCtgTt4444B.1.1.4181
ORF1ab/nsp2336A336VgCtgTt3434AY.99.20.003133
ORF1ab/nsp2336A336VgCtgTt3030AY.4.50.003225
ORF1ab/nsp2336A336VgCtgTt3030C.360.027322
ORF1ab/nsp2336A336VgCtgTt2929AY.30.000288
ORF1ab/nsp2336A336VgCtgTt2929AY.390.000717
ORF1ab/nsp2336A336VgCtgTt2929C.370.003366
ORF1ab/nsp2336A336VgCtgTt2626B.1.1.3160.024052
ORF1ab/nsp2336A336VgCtgTt2525AY.1170.002113
ORF1ab/nsp2336A336VgCtgTt2222AY.20.007835
ORF1ab/nsp2336A336VgCtgTt2222B.1.4270.001111
ORF1ab/nsp2336A336VgCtgTt2121AY.850.008971
ORF1ab/nsp2336A336VgCtgTt2121B.1.177.810.003976
ORF1ab/nsp2336A336VgCtgTt1818AY.1020.000477
ORF1ab/nsp2336A336VgCtgTt1515AY.1000.00069
ORF1ab/nsp2336A336VgCtgTt1515B.1.1600.000468
ORF1ab/nsp2336A336VgCtgTt1414P.1.140.000669
ORF1ab/nsp2336A336VgCtgTt1313AY.260.000368
ORF1ab/nsp2336A336VgCtgTt1212AY.4.20.00026
ORF1ab/nsp2336A336VgCtgTt1212B.1.1.5190.000477
ORF1ab/nsp2336A336VgCtgTt1212P.20.00224
ORF1ab/nsp2336A336VgCtgTt1111B.1.1.1760.004833
ORF1ab/nsp2336A336VgCtgTt1111B.1.3510.000327
ORF1ab/nsp2336A336VgCtgTt1010AY.1200.000372
ORF1ab/nsp2336A336VgCtgTt88AY.1180.000501
ORF1ab/nsp2336A336VgCtgTt88AY.350.001864
ORF1ab/nsp2336A336VgCtgTt88AY.610.000838
ORF1ab/nsp2336A336VgCtgTt88B.1.1.2220.001632
ORF1ab/nsp2336A336VgCtgTt88B.1.1.630.003086
ORF1ab/nsp2336A336VgCtgTt88D.20.0006
ORF1ab/nsp2336A336VgCtgTt77AY.60.000288
ORF1ab/nsp2336A336VgCtgTt77AY.750.000392
ORF1ab/nsp2336A336VgCtgTt77B.1.36.290.003621
ORF1ab/nsp2336A336VgCtgTt77B.1.4260.007064
ORF1ab/nsp2336A336VgCtgTt66AY.340.000582
ORF1ab/nsp2336A336VgCtgTt66AY.420.000241
ORF1ab/nsp2336A336VgCtgTt66AY.460.000624
ORF1ab/nsp2336A336VgCtgTt66AY.790.007264
ORF1ab/nsp2336A336VgCtgTt66B.1.177.860.001101
ORF1ab/nsp2336A336VgCtgTt66B.1.2210.000426
ORF1ab/nsp2336A336VgCtgTt66B.1.2340.000792
ORF1ab/nsp2336A336VgCtgTt66B.1.5260.000141
ORF1ab/nsp2336A336VgCtgTt66B.1.5750.00182
ORF1ab/nsp2336A336VgCtgTt66B.1.5960.000523
ORF1ab/nsp2336A336VgCtgTt55AY.1190.000177
ORF1ab/nsp2336A336VgCtgTt55AY.98.10.000242
ORF1ab/nsp2336A336VgCtgTt55B.1.1.1700.006234
ORF1ab/nsp2336A336VgCtgTt55B.1.177.40.001055
ORF1ab/nsp2336A336VgCtgTt55B.1.5820.002453
ORF1ab/nsp2336A336VgCtgTt44A0.001548
ORF1ab/nsp2336A336VgCtgTt44AY.140.000352
ORF1ab/nsp2336A336VgCtgTt44AY.200.000155
ORF1ab/nsp2336A336VgCtgTt44AY.46.30.003735
ORF1ab/nsp2336A336VgCtgTt44AY.690.000747
ORF1ab/nsp2336A336VgCtgTt44AY.9.10.000335
ORF1ab/nsp2336A336VgCtgTt44B.1.1.3700.050633
ORF1ab/nsp2336A336VgCtgTt44B.1.160.90.028777
ORF1ab/nsp2336A336VgCtgTt44B.1.214.30.028571
ORF1ab/nsp2336A336VgCtgTt44B.1.258.170.000416
ORF1ab/nsp2336A336VgCtgTt44B.1.6260.022857
ORF1ab/nsp2336A336VgCtgTt44B.1.9.50.022727
ORF1ab/nsp2336A336VgCtgTt44P.1.100.001078
ORF1ab/nsp2336A336VgCtgTt33A.2.20.005068
ORF1ab/nsp2336A336VgCtgTt23AY.16.10.00094
ORF1ab/nsp2336A336VgCtgTt33AY.330.0002
ORF1ab/nsp2336A336VgCtgTt33AY.360.000445
ORF1ab/nsp2336A336VgCtgTt23AY.470.000062
ORF1ab/nsp2336A336VgCtgTt33AY.640.001786
ORF1ab/nsp2336A336VgCtgTt33B.1.1.1610.010601
ORF1ab/nsp2336A336VgCtgTt33B.1.1.2140.000166
ORF1ab/nsp2336A336VgCtgTt33B.1.1.3040.008427
ORF1ab/nsp2336A336VgCtgTt33B.1.1.3540.013158
ORF1ab/nsp2336A336VgCtgTt33B.1.1.5250.016393
ORF1ab/nsp2336A336VgCtgTt33B.1.2580.0002
ORF1ab/nsp2336A336VgCtgTt33B.1.3460.003932
ORF1ab/nsp2336A336VgCtgTt33B.1.36.350.007812
ORF1ab/nsp2336A336VgCtgTt33B.1.6210.000266
ORF1ab/nsp2336A336VgCtgTt33B.1.6280.001057
ORF1ab/nsp2336A336VgCtgTt33B.6.60.002667
ORF1ab/nsp2336A336VgCtgTt22AY.1080.002205
ORF1ab/nsp2336A336VgCtgTt22AY.1210.000271
ORF1ab/nsp2336A336VgCtgTt22AY.160.000759
ORF1ab/nsp2336A336VgCtgTt22AY.23.10.000835
ORF1ab/nsp2336A336VgCtgTt22AY.39.10.000079
ORF1ab/nsp2336A336VgCtgTt22AY.4.2.10.000298
ORF1ab/nsp2336A336VgCtgTt22AY.50.000041
ORF1ab/nsp2336A336VgCtgTt22AY.710.00095
ORF1ab/nsp2336A336VgCtgTt22AY.720.002721
ORF1ab/nsp2336A336VgCtgTt22AY.9.20.000073
ORF1ab/nsp2336A336VgCtgTt22AY.980.000158
ORF1ab/nsp2336A336VgCtgTt22B.1.1.1290.018349
ORF1ab/nsp2336A336VgCtgTt22B.1.1.1530.002191
ORF1ab/nsp2336A336VgCtgTt22B.1.1.2160.001781
ORF1ab/nsp2336A336VgCtgTt22B.1.1.2980.001724
ORF1ab/nsp2336A336VgCtgTt22B.1.1.3220.017544
ORF1ab/nsp2336A336VgCtgTt22B.1.1.330.000842
ORF1ab/nsp2336A336VgCtgTt22B.1.1.4170.005405
ORF1ab/nsp2336A336VgCtgTt22B.1.1.4320.002532
ORF1ab/nsp2336A336VgCtgTt22B.1.1.500.001358
ORF1ab/nsp2336A336VgCtgTt22B.1.1.5230.003125
ORF1ab/nsp2336A336VgCtgTt22B.1.177.210.000153
ORF1ab/nsp2336A336VgCtgTt22B.1.177.870.001456
ORF1ab/nsp2336A336VgCtgTt22B.1.2100.004264
ORF1ab/nsp2336A336VgCtgTt22B.1.2320.001075
ORF1ab/nsp2336A336VgCtgTt22B.1.360.000292
ORF1ab/nsp2336A336VgCtgTt22B.1.3690.00057
ORF1ab/nsp2336A336VgCtgTt22B.1.3750.001639
ORF1ab/nsp2336A336VgCtgTt22B.1.466.20.000782
ORF1ab/nsp2336A336VgCtgTt22B.1.5170.000854
ORF1ab/nsp2336A336VgCtgTt22B.1.5250.000226
ORF1ab/nsp2336A336VgCtgTt22B.1.6370.000146
ORF1ab/nsp2336A336VgCtgTt22B.400.000729
ORF1ab/nsp2336A336VgCtgTt22P.1.70.000639
ORF1ab/nsp2336A336VgCtgTt22Q.80.00033
ORF1ab/nsp2336A336VgCtgTt11A.23.10.000704
ORF1ab/nsp2336A336VgCtgTt11AN.10.02
ORF1ab/nsp2336A336VgCtgTt11AY.1100.000113
ORF1ab/nsp2336A336VgCtgTt11AY.1110.000183
ORF1ab/nsp2336A336VgCtgTt11AY.1130.000142
ORF1ab/nsp2336A336VgCtgTt11AY.130.000161
ORF1ab/nsp2336A336VgCtgTt11AY.29.10.000221
ORF1ab/nsp2336A336VgCtgTt11AY.400.000964
ORF1ab/nsp2336A336VgCtgTt11AY.450.000122
ORF1ab/nsp2336A336VgCtgTt11AY.46.60.000072
ORF1ab/nsp2336A336VgCtgTt11AY.480.000465
ORF1ab/nsp2336A336VgCtgTt11AY.5.40.000277
ORF1ab/nsp2336A336VgCtgTt11AY.520.000814
ORF1ab/nsp2336A336VgCtgTt11AY.650.000533
ORF1ab/nsp2336A336VgCtgTt11AY.7.10.000113
ORF1ab/nsp2336A336VgCtgTt11AY.740.000116
ORF1ab/nsp2336A336VgCtgTt11AY.75.10.00018
ORF1ab/nsp2336A336VgCtgTt11AY.780.001541
ORF1ab/nsp2336A336VgCtgTt11AY.880.000884
ORF1ab/nsp2336A336VgCtgTt11AY.90.000068
ORF1ab/nsp2336A336VgCtgTt11AY.920.000287
ORF1ab/nsp2336A336VgCtgTt11AY.960.002075
ORF1ab/nsp2336A336VgCtgTt11AY.99.10.001553
ORF1ab/nsp2336A336VgCtgTt11B0.000128
ORF1ab/nsp2336A336VgCtgTt11B.1.1.10.000327
ORF1ab/nsp2336A336VgCtgTt11B.1.1.280.000311
ORF1ab/nsp2336A336VgCtgTt11B.1.1.2800.003086
ORF1ab/nsp2336A336VgCtgTt11B.1.1.2970.002237
ORF1ab/nsp2336A336VgCtgTt11B.1.1.3170.000412
ORF1ab/nsp2336A336VgCtgTt11B.1.1.3230.014085
ORF1ab/nsp2336A336VgCtgTt11B.1.1.3530.020833
ORF1ab/nsp2336A336VgCtgTt11B.1.1.3720.000689
ORF1ab/nsp2336A336VgCtgTt11B.1.1.3980.003226
ORF1ab/nsp2336A336VgCtgTt11B.1.1.4200.001006
ORF1ab/nsp2336A336VgCtgTt11B.1.1.4240.045455
ORF1ab/nsp2336A336VgCtgTt11B.1.1.4420.018519
ORF1ab/nsp2336A336VgCtgTt11B.1.1.520.012195
ORF1ab/nsp2336A336VgCtgTt11B.1.1.700.000341
ORF1ab/nsp2336A336VgCtgTt11B.1.1.80.003584
ORF1ab/nsp2336A336VgCtgTt11B.1.160.320.004292
ORF1ab/nsp2336A336VgCtgTt11B.1.177.350.000691
ORF1ab/nsp2336A336VgCtgTt11B.1.177.420.000894
ORF1ab/nsp2336A336VgCtgTt11B.1.177.450.000381
ORF1ab/nsp2336A336VgCtgTt11B.1.177.480.003125
ORF1ab/nsp2336A336VgCtgTt11B.1.177.540.000606
ORF1ab/nsp2336A336VgCtgTt11B.1.177.600.000218
ORF1ab/nsp2336A336VgCtgTt11B.1.177.700.005917
ORF1ab/nsp2336A336VgCtgTt11B.1.177.740.015152
ORF1ab/nsp2336A336VgCtgTt11B.1.177.770.000726
ORF1ab/nsp2336A336VgCtgTt11B.1.214.20.0006
ORF1ab/nsp2336A336VgCtgTt11B.1.2220.001692
ORF1ab/nsp2336A336VgCtgTt11B.1.258.30.001675
ORF1ab/nsp2336A336VgCtgTt11B.1.2650.001271
ORF1ab/nsp2336A336VgCtgTt11B.1.2790.000514
ORF1ab/nsp2336A336VgCtgTt11B.1.3490.000715
ORF1ab/nsp2336A336VgCtgTt11B.1.351.20.000303
ORF1ab/nsp2336A336VgCtgTt11B.1.351.30.000876
ORF1ab/nsp2336A336VgCtgTt11B.1.3560.001727
ORF1ab/nsp2336A336VgCtgTt11B.1.36.100.004785
ORF1ab/nsp2336A336VgCtgTt11B.1.36.160.001425
ORF1ab/nsp2336A336VgCtgTt11B.1.36.220.001208
ORF1ab/nsp2336A336VgCtgTt11B.1.36.310.001751
ORF1ab/nsp2336A336VgCtgTt11B.1.36.70.004
ORF1ab/nsp2336A336VgCtgTt11B.1.36.80.001
ORF1ab/nsp2336A336VgCtgTt11B.1.3670.000792
ORF1ab/nsp2336A336VgCtgTt11B.1.4000.000429
ORF1ab/nsp2336A336VgCtgTt11B.1.4030.003268
ORF1ab/nsp2336A336VgCtgTt11B.1.4700.001404
ORF1ab/nsp2336A336VgCtgTt11B.1.4970.000315
ORF1ab/nsp2336A336VgCtgTt11B.1.5440.006024
ORF1ab/nsp2336A336VgCtgTt11B.1.5510.00129
ORF1ab/nsp2336A336VgCtgTt11B.1.5640.000426
ORF1ab/nsp2336A336VgCtgTt11B.1.5910.010638
ORF1ab/nsp2336A336VgCtgTt11B.1.6000.005848
ORF1ab/nsp2336A336VgCtgTt11B.1.617.10.000129
ORF1ab/nsp2336A336VgCtgTt11B.1.6270.00202
ORF1ab/nsp2336A336VgCtgTt11B.1.6290.013333
ORF1ab/nsp2336A336VgCtgTt11B.1.6340.003425
ORF1ab/nsp2336A336VgCtgTt11B.1.6360.006711
ORF1ab/nsp2336A336VgCtgTt11B.1.930.000934
ORF1ab/nsp2336A336VgCtgTt11B.550.00295
ORF1ab/nsp2336A336VgCtgTt11B.60.00091
ORF1ab/nsp2336A336VgCtgTt11P.1.120.000484
ORF1ab/nsp2336A336VgCtgTt11P.1.150.000232
ORF1ab/nsp2336A336VgCtgTt11P.1.170.000162
ORF1ab/nsp2336A336VgCtgTt11P.1.80.004785
ORF1ab/nsp2336A336VgCtgTt11Q.10.000126
ORF1ab/nsp2336A336VgCtgTt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.