CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 336 & Codon = Act

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2336A336TA516TnonsynGctAct51851811811-1813

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2336A336TGctAct518518All0.000099
ORF1ab/nsp2336A336TGctAct259259P.40.984791
ORF1ab/nsp2336A336TGctAct114114B.1.20.001004
ORF1ab/nsp2336A336TGctAct6262AY.40.000096
ORF1ab/nsp2336A336TGctAct3131B.1.1.70.000028
ORF1ab/nsp2336A336TGctAct88AY.430.000035
ORF1ab/nsp2336A336TGctAct66B.1.617.20.000023
ORF1ab/nsp2336A336TGctAct55P.20.000933
ORF1ab/nsp2336A336TGctAct33AY.1030.000019
ORF1ab/nsp2336A336TGctAct33B.10.000027
ORF1ab/nsp2336A336TGctAct33B.1.1.280.000934
ORF1ab/nsp2336A336TGctAct33P.1.140.000143
ORF1ab/nsp2336A336TGctAct22AY.250.000012
ORF1ab/nsp2336A336TGctAct11A0.000387
ORF1ab/nsp2336A336TGctAct11AU.20.002421
ORF1ab/nsp2336A336TGctAct11AY.1170.000085
ORF1ab/nsp2336A336TGctAct11AY.1200.000037
ORF1ab/nsp2336A336TGctAct11AY.190.00114
ORF1ab/nsp2336A336TGctAct11AY.200.000039
ORF1ab/nsp2336A336TGctAct11AY.240.000431
ORF1ab/nsp2336A336TGctAct11AY.30.00001
ORF1ab/nsp2336A336TGctAct11AY.680.000274
ORF1ab/nsp2336A336TGctAct11AY.740.000116
ORF1ab/nsp2336A336TGctAct11AY.860.00083
ORF1ab/nsp2336A336TGctAct11B.1.10.000018
ORF1ab/nsp2336A336TGctAct11B.1.1.3540.004386
ORF1ab/nsp2336A336TGctAct11B.1.1.3720.000689
ORF1ab/nsp2336A336TGctAct11B.1.1600.000031
ORF1ab/nsp2336A336TGctAct11B.1.2980.002114
ORF1ab/nsp2336A336TGctAct11B.1.5960.000087
ORF1ab/nsp2336A336TGctAct11B.1.6090.000479
ORF1ab/nsp2336A336TGctAct11B.40.002208

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.