CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 336

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2336A336VA516VnonsyngCtgTt446344570.9986561811-1813
ORF1ab/nsp2336A336VA516VnonsyngCTgTG446340.0008962581811-1813
ORF1ab/nsp2336A336VA516VnonsyngCTgTA446320.0004481291811-1813
ORF1ab/nsp2336A336AA516AsyngcTgcA10158780.8650251811-1813
ORF1ab/nsp2336A336AA516AsyngcTgcC10151340.132021811-1813
ORF1ab/nsp2336A336AA516AsyngcTgcG101530.002955671811-1813
ORF1ab/nsp2336A336TA516TnonsynGctAct51851811811-1813
ORF1ab/nsp2336A336SA516SnonsynGctTct1941870.9639181811-1813
ORF1ab/nsp2336A336SA516SnonsynGCTAGC19470.03608251811-1813
ORF1ab/nsp2336A336delA516deldelGCT---484811811-1813
ORF1ab/nsp2336A336GA516GnonsyngCtgGt484811811-1813
ORF1ab/nsp2336A336DA516DnonsyngCtgAt313111811-1813
ORF1ab/nsp2336A336PA516PnonsynGctCct161611811-1813
ORF1ab/nsp2336A336EA516EnonsyngCTgAA5511811-1813
ORF1ab/nsp2336A336LA516LnonsynGCTTTG540.81811-1813
ORF1ab/nsp2336A336LA516LnonsynGCTCTA510.21811-1813
ORF1ab/nsp2336A336del1A516del1delgcTgc-1111811-1813
ORF1ab/nsp2336A336NA516NnonsynGCtAAt1111811-1813
ORF1ab/nsp2336A336FA516FnonsynGCtTTt1111811-1813
ORF1ab/nsp2336A336RA516RnonsynGCTAGG1111811-1813

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2336A336VgCtgTt44574463All0.000852
ORF1ab/nsp2336A336VgCTgTG44463All0.000001
ORF1ab/nsp2336A336VgCTgTA24463All0
ORF1ab/nsp2336A336AgcTgcA8781015All0.000168
ORF1ab/nsp2336A336AgcTgcC1341015All0.000026
ORF1ab/nsp2336A336AgcTgcG31015All0.000001
ORF1ab/nsp2336A336VgCtgTt948948B.1.1.70.000849
ORF1ab/nsp2336A336TGctAct518518All0.000099
ORF1ab/nsp2336A336VgCtgTt337337AY.40.000525
ORF1ab/nsp2336A336AgcTgcA304315B.1.1.70.000272
ORF1ab/nsp2336A336AgcTgcC11315B.1.1.70.00001
ORF1ab/nsp2336A336TGctAct259259P.40.984791
ORF1ab/nsp2336A336VgCtgTt251251B.10.002299
ORF1ab/nsp2336A336VgCtgTt213213AY.430.000944
ORF1ab/nsp2336A336VgCtgTt207207AY.410.060847
ORF1ab/nsp2336A336VgCtgTt206206B.1.20.001814
ORF1ab/nsp2336A336VgCtgTt202202B.1.1.3970.454955
ORF1ab/nsp2336A336SGctTct187194All0.000036
ORF1ab/nsp2336A336SGCTAGC7194All0.000001
ORF1ab/nsp2336A336VgCtgTt180180B.1.1.2840.019332
ORF1ab/nsp2336A336VgCtgTt163163B.1.617.20.000614
ORF1ab/nsp2336A336VgCtgTt137137B.1.595.41
ORF1ab/nsp2336A336VgCtgTt121121B.1.10.002195
ORF1ab/nsp2336A336TGctAct114114B.1.20.001004
ORF1ab/nsp2336A336VgCtgTt104104AY.440.000633
ORF1ab/nsp2336A336AgcTgcA97102AY.430.00043
ORF1ab/nsp2336A336AgcTgcC5102AY.430.000022
ORF1ab/nsp2336A336VgCtgTt9292P.10.001449
ORF1ab/nsp2336A336VgCtgTt8080AY.250.000481
ORF1ab/nsp2336A336AgcTgcC4575AY.40.00007
ORF1ab/nsp2336A336AgcTgcA3075AY.40.000047
ORF1ab/nsp2336A336AgcTgcA5869B.1.617.20.000218
ORF1ab/nsp2336A336AgcTgcC969B.1.617.20.000034
ORF1ab/nsp2336A336AgcTgcG269B.1.617.20.000008
ORF1ab/nsp2336A336VgCtgTt6565AY.1030.000404
ORF1ab/nsp2336A336VgCtgTt6565B.1.4290.001529
ORF1ab/nsp2336A336TGctAct6262AY.40.000096
ORF1ab/nsp2336A336VgCtgTt5757B.1.1770.000751
ORF1ab/nsp2336A336VgCtgTt5656AY.290.000883
ORF1ab/nsp2336A336delGCT---4848All0.000009
ORF1ab/nsp2336A336GgCtgGt4848All0.000009
ORF1ab/nsp2336A336VgCtgTt4848B.1.2430.00334
ORF1ab/nsp2336A336GgCtgGt4646B.1.1.70.000041
ORF1ab/nsp2336A336VgCtgTt4444B.1.1.4181
ORF1ab/nsp2336A336VgCtgTt3434AY.99.20.003133
ORF1ab/nsp2336A336AgcTgcA3032B.10.000275
ORF1ab/nsp2336A336AgcTgcC232B.10.000018
ORF1ab/nsp2336A336DgCtgAt3131All0.000006
ORF1ab/nsp2336A336SGctTct3131B.1.1.70.000028
ORF1ab/nsp2336A336TGctAct3131B.1.1.70.000028
ORF1ab/nsp2336A336VgCtgTt3030AY.4.50.003225
ORF1ab/nsp2336A336VgCtgTt3030C.360.027322
ORF1ab/nsp2336A336AgcTgcC2429AY.250.000144
ORF1ab/nsp2336A336AgcTgcA529AY.250.00003
ORF1ab/nsp2336A336VgCtgTt2929AY.30.000288
ORF1ab/nsp2336A336VgCtgTt2929AY.390.000717
ORF1ab/nsp2336A336AgcTgcA2929AY.470.000902
ORF1ab/nsp2336A336VgCtgTt2929C.370.003366
ORF1ab/nsp2336A336AgcTgcA2828B.1.2190.264151
ORF1ab/nsp2336A336AgcTgcA2828B.1.5640.011925
ORF1ab/nsp2336A336SGctTct2626AY.390.000642
ORF1ab/nsp2336A336VgCtgTt2626B.1.1.3160.024052
ORF1ab/nsp2336A336VgCtgTt2525AY.1170.002113
ORF1ab/nsp2336A336VgCtgTt2222AY.20.007835
ORF1ab/nsp2336A336VgCtgTt2222B.1.4270.001111
ORF1ab/nsp2336A336VgCtgTt2121AY.850.008971
ORF1ab/nsp2336A336AgcTgcA2121B.1.1.2790.023543
ORF1ab/nsp2336A336VgCtgTt2121B.1.177.810.003976
ORF1ab/nsp2336A336AgcTgcA1920AY.440.000116
ORF1ab/nsp2336A336AgcTgcC120AY.440.000006
ORF1ab/nsp2336A336SGctTct1919AY.250.000114
ORF1ab/nsp2336A336VgCtgTt1818AY.1020.000477
ORF1ab/nsp2336A336AgcTgcA1818AY.4.2.10.002682
ORF1ab/nsp2336A336SGctTct1818AY.430.00008
ORF1ab/nsp2336A336PGctCct1616All0.000003
ORF1ab/nsp2336A336VgCtgTt1515AY.1000.00069
ORF1ab/nsp2336A336VgCtgTt1515B.1.1600.000468
ORF1ab/nsp2336A336VgCtgTt1414P.1.140.000669
ORF1ab/nsp2336A336VgCtgTt1313AY.260.000368
ORF1ab/nsp2336A336SGctTct1213B.1.617.20.000045
ORF1ab/nsp2336A336SGCTAGC113B.1.617.20.000004
ORF1ab/nsp2336A336VgCtgTt1212AY.4.20.00026
ORF1ab/nsp2336A336VgCtgTt1212B.1.1.5190.000477
ORF1ab/nsp2336A336delGCT---1212B.1.1.70.000011
ORF1ab/nsp2336A336VgCtgTt1212P.20.00224
ORF1ab/nsp2336A336AgcTgcA1111AY.190.012543
ORF1ab/nsp2336A336SGctTct1111AY.4.10.008112
ORF1ab/nsp2336A336VgCtgTt1111B.1.1.1760.004833
ORF1ab/nsp2336A336VgCtgTt1111B.1.3510.000327
ORF1ab/nsp2336A336AgcTgcA910AY.1030.000056
ORF1ab/nsp2336A336AgcTgcC110AY.1030.000006
ORF1ab/nsp2336A336VgCtgTt1010AY.1200.000372
ORF1ab/nsp2336A336AgcTgcA1010AY.46.50.001984
ORF1ab/nsp2336A336SGctTct99AY.40.000014
ORF1ab/nsp2336A336AgcTgcC89B.1.5250.000905
ORF1ab/nsp2336A336AgcTgcA19B.1.5250.000113
ORF1ab/nsp2336A336AgcTgcA99P.1.20.010405
ORF1ab/nsp2336A336VgCtgTt88AY.1180.000501
ORF1ab/nsp2336A336VgCtgTt88AY.350.001864
ORF1ab/nsp2336A336TGctAct88AY.430.000035
ORF1ab/nsp2336A336VgCtgTt88AY.610.000838
ORF1ab/nsp2336A336SGctTct88AY.850.003417
ORF1ab/nsp2336A336AgcTgcA58B.1.10.000091
ORF1ab/nsp2336A336AgcTgcC38B.1.10.000054
ORF1ab/nsp2336A336VgCtgTt88B.1.1.2220.001632
ORF1ab/nsp2336A336VgCtgTt88B.1.1.630.003086
ORF1ab/nsp2336A336VgCtgTt88D.20.0006
ORF1ab/nsp2336A336AgcTgcA77A.270.011589
ORF1ab/nsp2336A336DgCtgAt77AY.340.000679
ORF1ab/nsp2336A336AgcTgcA77AY.390.000173
ORF1ab/nsp2336A336VgCtgTt77AY.60.000288
ORF1ab/nsp2336A336VgCtgTt77AY.750.000392
ORF1ab/nsp2336A336AgcTgcA77AY.99.20.000645
ORF1ab/nsp2336A336AgcTgcA77B.1.20.000062
ORF1ab/nsp2336A336VgCtgTt77B.1.36.290.003621
ORF1ab/nsp2336A336VgCtgTt77B.1.4260.007064
ORF1ab/nsp2336A336AgcTgcA66AY.1170.000507
ORF1ab/nsp2336A336VgCtgTt66AY.340.000582
ORF1ab/nsp2336A336VgCtgTt66AY.420.000241
ORF1ab/nsp2336A336SGctTct46AY.440.000024
ORF1ab/nsp2336A336SGCTAGC26AY.440.000012
ORF1ab/nsp2336A336AgcTgcC46AY.450.000487
ORF1ab/nsp2336A336AgcTgcA26AY.450.000243
ORF1ab/nsp2336A336VgCtgTt66AY.460.000624
ORF1ab/nsp2336A336AgcTgcA56AY.610.000524
ORF1ab/nsp2336A336AgcTgcC16AY.610.000105
ORF1ab/nsp2336A336VgCtgTt66AY.790.007264
ORF1ab/nsp2336A336AgcTgcA66AZ.10.005204
ORF1ab/nsp2336A336SGctTct56B.10.000046
ORF1ab/nsp2336A336SGCTAGC16B.10.000009
ORF1ab/nsp2336A336AgcTgcA66B.1.1.4290.02765
ORF1ab/nsp2336A336VgCtgTt66B.1.177.860.001101
ORF1ab/nsp2336A336VgCtgTt66B.1.2210.000426
ORF1ab/nsp2336A336VgCtgTt66B.1.2340.000792
ORF1ab/nsp2336A336AgcTgcA66B.1.4290.000141
ORF1ab/nsp2336A336VgCtgTt66B.1.5260.000141
ORF1ab/nsp2336A336VgCtgTt66B.1.5750.00182
ORF1ab/nsp2336A336VgCtgTt66B.1.5960.000523
ORF1ab/nsp2336A336TGctAct66B.1.617.20.000023
ORF1ab/nsp2336A336EgCTgAA55All0.000001
ORF1ab/nsp2336A336LGCTTTG45All0.000001
ORF1ab/nsp2336A336LGCTCTA15All0
ORF1ab/nsp2336A336AgcTgcA55AY.1000.00023
ORF1ab/nsp2336A336AgcTgcC45AY.1020.000106
ORF1ab/nsp2336A336AgcTgcA15AY.1020.000027
ORF1ab/nsp2336A336VgCtgTt55AY.1190.000177
ORF1ab/nsp2336A336AgcTgcA35AY.260.000085
ORF1ab/nsp2336A336AgcTgcC25AY.260.000057
ORF1ab/nsp2336A336VgCtgTt55AY.98.10.000242
ORF1ab/nsp2336A336DgCtgAt55B.1.10.000091
ORF1ab/nsp2336A336VgCtgTt55B.1.1.1700.006234
ORF1ab/nsp2336A336AgcTgcA55B.1.1.250.002843
ORF1ab/nsp2336A336AgcTgcA55B.1.1770.000066
ORF1ab/nsp2336A336VgCtgTt55B.1.177.40.001055
ORF1ab/nsp2336A336VgCtgTt55B.1.5820.002453
ORF1ab/nsp2336A336TGctAct55P.20.000933
ORF1ab/nsp2336A336VgCTgTG440.222222
ORF1ab/nsp2336A336LGCTTTG440.222222
ORF1ab/nsp2336A336VgCtgTt44A0.001548
ORF1ab/nsp2336A336SGctTct44AY.1030.000025
ORF1ab/nsp2336A336AgcTgcA44AY.120.10.001284
ORF1ab/nsp2336A336VgCtgTt44AY.140.000352
ORF1ab/nsp2336A336VgCtgTt44AY.200.000155
ORF1ab/nsp2336A336VgCtgTt44AY.46.30.003735
ORF1ab/nsp2336A336VgCtgTt44AY.690.000747
ORF1ab/nsp2336A336VgCtgTt44AY.9.10.000335
ORF1ab/nsp2336A336delGCT---44B.1.1.330.001684
ORF1ab/nsp2336A336VgCtgTt44B.1.1.3700.050633
ORF1ab/nsp2336A336VgCtgTt44B.1.160.90.028777
ORF1ab/nsp2336A336delGCT---44B.1.1770.000053
ORF1ab/nsp2336A336VgCtgTt44B.1.214.30.028571
ORF1ab/nsp2336A336VgCtgTt44B.1.258.170.000416
ORF1ab/nsp2336A336AgcTgcA34B.1.5260.000071
ORF1ab/nsp2336A336AgcTgcC14B.1.5260.000024
ORF1ab/nsp2336A336VgCtgTt44B.1.6260.022857
ORF1ab/nsp2336A336VgCtgTt44B.1.9.50.022727
ORF1ab/nsp2336A336AgcTgcA34C.370.000348
ORF1ab/nsp2336A336AgcTgcC14C.370.000116
ORF1ab/nsp2336A336VgCtgTt44P.1.100.001078
ORF1ab/nsp2336A336VgCtgTt33A.2.20.005068
ORF1ab/nsp2336A336TGctAct33AY.1030.000019
ORF1ab/nsp2336A336SGctTct33AY.116.10.000934
ORF1ab/nsp2336A336AgcTgcA33AY.1180.000188
ORF1ab/nsp2336A336AgcTgcA33AY.1190.000106
ORF1ab/nsp2336A336VgCtgTt23AY.16.10.00094
ORF1ab/nsp2336A336VgCTgTA13AY.16.10.00047
ORF1ab/nsp2336A336AgcTgcA33AY.200.000117
ORF1ab/nsp2336A336AgcTgcA33AY.290.000047
ORF1ab/nsp2336A336AgcTgcA33AY.30.00003
ORF1ab/nsp2336A336SGctTct33AY.320.001597
ORF1ab/nsp2336A336VgCtgTt33AY.330.0002
ORF1ab/nsp2336A336VgCtgTt33AY.360.000445
ORF1ab/nsp2336A336DgCtgAt33AY.440.000018
ORF1ab/nsp2336A336PGctCct33AY.440.000018
ORF1ab/nsp2336A336AgcTgcA33AY.460.000312
ORF1ab/nsp2336A336VgCtgTt23AY.470.000062
ORF1ab/nsp2336A336VgCTgTA13AY.470.000031
ORF1ab/nsp2336A336VgCtgTt33AY.640.001786
ORF1ab/nsp2336A336SGctTct33AY.900.002053
ORF1ab/nsp2336A336TGctAct33B.10.000027
ORF1ab/nsp2336A336DgCtgAt33B.10.000027
ORF1ab/nsp2336A336VgCtgTt33B.1.1.1610.010601
ORF1ab/nsp2336A336VgCtgTt33B.1.1.2140.000166
ORF1ab/nsp2336A336TGctAct33B.1.1.280.000934
ORF1ab/nsp2336A336VgCtgTt33B.1.1.3040.008427
ORF1ab/nsp2336A336delGCT---33B.1.1.3480.002389
ORF1ab/nsp2336A336VgCtgTt33B.1.1.3540.013158
ORF1ab/nsp2336A336AgcTgcA33B.1.1.5250.016393
ORF1ab/nsp2336A336VgCtgTt33B.1.1.5250.016393
ORF1ab/nsp2336A336DgCtgAt33B.1.1.70.000003
ORF1ab/nsp2336A336AgcTgcA33B.1.2430.000209
ORF1ab/nsp2336A336VgCtgTt33B.1.2580.0002
ORF1ab/nsp2336A336VgCtgTt33B.1.3460.003932
ORF1ab/nsp2336A336VgCtgTt33B.1.36.350.007812
ORF1ab/nsp2336A336VgCtgTt33B.1.6210.000266
ORF1ab/nsp2336A336VgCtgTt33B.1.6280.001057
ORF1ab/nsp2336A336AgcTgcA33B.4.50.035714
ORF1ab/nsp2336A336VgCtgTt33B.6.60.002667
ORF1ab/nsp2336A336AgcTgcA33P.10.000047
ORF1ab/nsp2336A336TGctAct33P.1.140.000143
ORF1ab/nsp2336A336SGctTct22AY.1070.000932
ORF1ab/nsp2336A336VgCtgTt22AY.1080.002205
ORF1ab/nsp2336A336AgcTgcA22AY.1130.000285
ORF1ab/nsp2336A336SGctTct22AY.1190.000071
ORF1ab/nsp2336A336AgcTgcA22AY.120.2.10.000997
ORF1ab/nsp2336A336VgCtgTt22AY.1210.000271
ORF1ab/nsp2336A336VgCtgTt22AY.160.000759
ORF1ab/nsp2336A336VgCtgTt22AY.23.10.000835
ORF1ab/nsp2336A336TGctAct22AY.250.000012
ORF1ab/nsp2336A336SGCTAGC12AY.30.00001
ORF1ab/nsp2336A336SGctTct12AY.30.00001
ORF1ab/nsp2336A336AgcTgcA12AY.330.000067
ORF1ab/nsp2336A336AgcTgcC12AY.330.000067
ORF1ab/nsp2336A336VgCtgTt22AY.39.10.000079
ORF1ab/nsp2336A336delGCT---22AY.40.000003
ORF1ab/nsp2336A336AgcTgcA22AY.4.20.000043
ORF1ab/nsp2336A336VgCtgTt22AY.4.2.10.000298
ORF1ab/nsp2336A336delGCT---22AY.440.000012
ORF1ab/nsp2336A336VgCtgTt22AY.50.000041
ORF1ab/nsp2336A336AgcTgcC12AY.550.000917
ORF1ab/nsp2336A336AgcTgcA12AY.550.000917
ORF1ab/nsp2336A336AgcTgcC22AY.60.000082
ORF1ab/nsp2336A336SGctTct22AY.610.00021
ORF1ab/nsp2336A336SGctTct22AY.640.00119
ORF1ab/nsp2336A336SGctTct22AY.70.000392
ORF1ab/nsp2336A336VgCtgTt22AY.710.00095
ORF1ab/nsp2336A336VgCtgTt22AY.720.002721
ORF1ab/nsp2336A336AgcTgcA22AY.850.000854
ORF1ab/nsp2336A336VgCtgTt22AY.9.20.000073
ORF1ab/nsp2336A336AgcTgcA12AY.9.20.000037
ORF1ab/nsp2336A336AgcTgcG12AY.9.20.000037
ORF1ab/nsp2336A336VgCtgTt22AY.980.000158
ORF1ab/nsp2336A336SGctTct22AY.98.10.000097
ORF1ab/nsp2336A336VgCtgTt22B.1.1.1290.018349
ORF1ab/nsp2336A336VgCtgTt22B.1.1.1530.002191
ORF1ab/nsp2336A336VgCtgTt22B.1.1.2160.001781
ORF1ab/nsp2336A336VgCtgTt22B.1.1.2980.001724
ORF1ab/nsp2336A336VgCtgTt22B.1.1.3220.017544
ORF1ab/nsp2336A336VgCtgTt22B.1.1.330.000842
ORF1ab/nsp2336A336VgCtgTt22B.1.1.4170.005405
ORF1ab/nsp2336A336VgCtgTt22B.1.1.4320.002532
ORF1ab/nsp2336A336VgCtgTt22B.1.1.500.001358
ORF1ab/nsp2336A336VgCtgTt22B.1.1.5230.003125
ORF1ab/nsp2336A336VgCtgTt22B.1.177.210.000153
ORF1ab/nsp2336A336VgCtgTt22B.1.177.870.001456
ORF1ab/nsp2336A336VgCtgTt22B.1.2100.004264
ORF1ab/nsp2336A336VgCtgTt22B.1.2320.001075
ORF1ab/nsp2336A336SGctTct22B.1.2430.000139
ORF1ab/nsp2336A336AgcTgcA12B.1.2580.000067
ORF1ab/nsp2336A336AgcTgcC12B.1.2580.000067
ORF1ab/nsp2336A336SGctTct22B.1.351.20.000605
ORF1ab/nsp2336A336VgCtgTt22B.1.360.000292
ORF1ab/nsp2336A336VgCtgTt22B.1.3690.00057
ORF1ab/nsp2336A336VgCtgTt22B.1.3750.001639
ORF1ab/nsp2336A336VgCtgTt22B.1.466.20.000782
ORF1ab/nsp2336A336VgCtgTt22B.1.5170.000854
ORF1ab/nsp2336A336VgCtgTt22B.1.5250.000226
ORF1ab/nsp2336A336DgCtgAt22B.1.617.20.000008
ORF1ab/nsp2336A336VgCtgTt22B.1.6370.000146
ORF1ab/nsp2336A336VgCtgTt22B.400.000729
ORF1ab/nsp2336A336AgcTgcA22C.360.001821
ORF1ab/nsp2336A336PGctCct22D.20.00015
ORF1ab/nsp2336A336delGCT---22N.60.014184
ORF1ab/nsp2336A336VgCtgTt22P.1.70.000639
ORF1ab/nsp2336A336delGCT---22P.20.000373
ORF1ab/nsp2336A336AgcTgcA22Q.80.00033
ORF1ab/nsp2336A336VgCtgTt22Q.80.00033
ORF1ab/nsp2336A336TGctAct11A0.000387
ORF1ab/nsp2336A336SGctTct11A.2.50.000499
ORF1ab/nsp2336A336VgCtgTt11A.23.10.000704
ORF1ab/nsp2336A336RGCTAGG11All0
ORF1ab/nsp2336A336del1gcTgc-11All0
ORF1ab/nsp2336A336NGCtAAt11All0
ORF1ab/nsp2336A336FGCtTTt11All0
ORF1ab/nsp2336A336VgCtgTt11AN.10.02
ORF1ab/nsp2336A336TGctAct11AU.20.002421
ORF1ab/nsp2336A336AgcTgcA11AY.1060.000335
ORF1ab/nsp2336A336AgcTgcA11AY.1090.00074
ORF1ab/nsp2336A336VgCtgTt11AY.1100.000113
ORF1ab/nsp2336A336AgcTgcA11AY.1100.000113
ORF1ab/nsp2336A336VgCtgTt11AY.1110.000183
ORF1ab/nsp2336A336delGCT---11AY.1110.000183
ORF1ab/nsp2336A336DgCtgAt11AY.1110.000183
ORF1ab/nsp2336A336PGctCct11AY.1130.000142
ORF1ab/nsp2336A336delGCT---11AY.1130.000142
ORF1ab/nsp2336A336VgCtgTt11AY.1130.000142
ORF1ab/nsp2336A336TGctAct11AY.1170.000085
ORF1ab/nsp2336A336SGctTct11AY.1180.000063
ORF1ab/nsp2336A336EgCTgAA11AY.1190.000035
ORF1ab/nsp2336A336AgcTgcC11AY.120.000316
ORF1ab/nsp2336A336TGctAct11AY.1200.000037
ORF1ab/nsp2336A336SGCTAGC11AY.120.10.000321
ORF1ab/nsp2336A336AgcTgcA11AY.1210.000135
ORF1ab/nsp2336A336AgcTgcA11AY.130.000161
ORF1ab/nsp2336A336VgCtgTt11AY.130.000161
ORF1ab/nsp2336A336TGctAct11AY.190.00114
ORF1ab/nsp2336A336TGctAct11AY.200.000039
ORF1ab/nsp2336A336AgcTgcA11AY.230.00007
ORF1ab/nsp2336A336TGctAct11AY.240.000431
ORF1ab/nsp2336A336delGCT---11AY.250.000006
ORF1ab/nsp2336A336GgCtgGt11AY.260.000028
ORF1ab/nsp2336A336delGCT---11AY.290.000016
ORF1ab/nsp2336A336VgCtgTt11AY.29.10.000221
ORF1ab/nsp2336A336TGctAct11AY.30.00001
ORF1ab/nsp2336A336AgcTgcC11AY.3.10.000085
ORF1ab/nsp2336A336SGctTct11AY.330.000067
ORF1ab/nsp2336A336AgcTgcA11AY.340.000097
ORF1ab/nsp2336A336SGctTct11AY.34.10.00051
ORF1ab/nsp2336A336AgcTgcA11AY.39.10.00004
ORF1ab/nsp2336A336DgCtgAt11AY.40.000002
ORF1ab/nsp2336A336AgcTgcA11AY.4.50.000107
ORF1ab/nsp2336A336delGCT---11AY.4.50.000107
ORF1ab/nsp2336A336VgCtgTt11AY.400.000964
ORF1ab/nsp2336A336delGCT---11AY.430.000004
ORF1ab/nsp2336A336EgCTgAA11AY.430.000004
ORF1ab/nsp2336A336FGCtTTt11AY.440.000006
ORF1ab/nsp2336A336VgCtgTt11AY.450.000122
ORF1ab/nsp2336A336SGctTct11AY.460.000104
ORF1ab/nsp2336A336AgcTgcA11AY.46.40.000165
ORF1ab/nsp2336A336delGCT---11AY.46.60.000072
ORF1ab/nsp2336A336VgCtgTt11AY.46.60.000072
ORF1ab/nsp2336A336EgCTgAA11AY.470.000031
ORF1ab/nsp2336A336VgCtgTt11AY.480.000465
ORF1ab/nsp2336A336AgcTgcA11AY.50.000021
ORF1ab/nsp2336A336PGctCct11AY.50.000021
ORF1ab/nsp2336A336VgCtgTt11AY.5.40.000277
ORF1ab/nsp2336A336VgCtgTt11AY.520.000814
ORF1ab/nsp2336A336VgCtgTt11AY.650.000533
ORF1ab/nsp2336A336delGCT---11AY.670.000464
ORF1ab/nsp2336A336TGctAct11AY.680.000274
ORF1ab/nsp2336A336VgCtgTt11AY.7.10.000113
ORF1ab/nsp2336A336VgCtgTt11AY.740.000116
ORF1ab/nsp2336A336TGctAct11AY.740.000116
ORF1ab/nsp2336A336AgcTgcA11AY.750.000056
ORF1ab/nsp2336A336VgCtgTt11AY.75.10.00018
ORF1ab/nsp2336A336AgcTgcA11AY.75.10.00018
ORF1ab/nsp2336A336VgCtgTt11AY.780.001541
ORF1ab/nsp2336A336delGCT---11AY.840.000437
ORF1ab/nsp2336A336TGctAct11AY.860.00083
ORF1ab/nsp2336A336VgCtgTt11AY.880.000884
ORF1ab/nsp2336A336AgcTgcA11AY.90.000068
ORF1ab/nsp2336A336VgCtgTt11AY.90.000068
ORF1ab/nsp2336A336delGCT---11AY.9.20.000037
ORF1ab/nsp2336A336VgCtgTt11AY.920.000287
ORF1ab/nsp2336A336DgCtgAt11AY.920.000287
ORF1ab/nsp2336A336VgCtgTt11AY.960.002075
ORF1ab/nsp2336A336AgcTgcC11AY.980.000079
ORF1ab/nsp2336A336delGCT---11AY.990.001049
ORF1ab/nsp2336A336VgCtgTt11AY.99.10.001553
ORF1ab/nsp2336A336VgCtgTt11B0.000128
ORF1ab/nsp2336A336PGctCct11B.10.000009
ORF1ab/nsp2336A336SGctTct11B.1.10.000018
ORF1ab/nsp2336A336GgCtgGt11B.1.10.000018
ORF1ab/nsp2336A336PGctCct11B.1.10.000018
ORF1ab/nsp2336A336delGCT---11B.1.10.000018
ORF1ab/nsp2336A336TGctAct11B.1.10.000018
ORF1ab/nsp2336A336VgCtgTt11B.1.1.10.000327
ORF1ab/nsp2336A336AgcTgcA11B.1.1.10.000327
ORF1ab/nsp2336A336PGctCct11B.1.1.1740.003378
ORF1ab/nsp2336A336AgcTgcA11B.1.1.2400.004695
ORF1ab/nsp2336A336VgCtgTt11B.1.1.280.000311
ORF1ab/nsp2336A336VgCtgTt11B.1.1.2800.003086
ORF1ab/nsp2336A336delGCT---11B.1.1.2840.000107
ORF1ab/nsp2336A336VgCtgTt11B.1.1.2970.002237
ORF1ab/nsp2336A336AgcTgcA11B.1.1.3170.000412
ORF1ab/nsp2336A336VgCtgTt11B.1.1.3170.000412
ORF1ab/nsp2336A336VgCtgTt11B.1.1.3230.014085
ORF1ab/nsp2336A336VgCtgTt11B.1.1.3530.020833
ORF1ab/nsp2336A336TGctAct11B.1.1.3540.004386
ORF1ab/nsp2336A336VgCtgTt11B.1.1.3720.000689
ORF1ab/nsp2336A336RGCTAGG11B.1.1.3720.000689
ORF1ab/nsp2336A336TGctAct11B.1.1.3720.000689
ORF1ab/nsp2336A336PGctCct11B.1.1.390.00051
ORF1ab/nsp2336A336VgCtgTt11B.1.1.3980.003226
ORF1ab/nsp2336A336AgcTgcA11B.1.1.3980.003226
ORF1ab/nsp2336A336VgCtgTt11B.1.1.4200.001006
ORF1ab/nsp2336A336VgCtgTt11B.1.1.4240.045455
ORF1ab/nsp2336A336VgCtgTt11B.1.1.4420.018519
ORF1ab/nsp2336A336SGctTct11B.1.1.500.000679
ORF1ab/nsp2336A336VgCtgTt11B.1.1.520.012195
ORF1ab/nsp2336A336EgCTgAA11B.1.1.70.000001
ORF1ab/nsp2336A336PGctCct11B.1.1.70.000001
ORF1ab/nsp2336A336VgCtgTt11B.1.1.700.000341
ORF1ab/nsp2336A336PGctCct11B.1.1.700.000341
ORF1ab/nsp2336A336VgCtgTt11B.1.1.80.003584
ORF1ab/nsp2336A336AgcTgcA11B.1.1460.004237
ORF1ab/nsp2336A336NGCtAAt11B.1.1600.000031
ORF1ab/nsp2336A336TGctAct11B.1.1600.000031
ORF1ab/nsp2336A336AgcTgcA11B.1.1600.000031
ORF1ab/nsp2336A336VgCtgTt11B.1.160.320.004292
ORF1ab/nsp2336A336DgCtgAt11B.1.1770.000013
ORF1ab/nsp2336A336VgCtgTt11B.1.177.350.000691
ORF1ab/nsp2336A336VgCtgTt11B.1.177.420.000894
ORF1ab/nsp2336A336SGctTct11B.1.177.440.000519
ORF1ab/nsp2336A336VgCtgTt11B.1.177.450.000381
ORF1ab/nsp2336A336VgCtgTt11B.1.177.480.003125
ORF1ab/nsp2336A336del1gcTgc-11B.1.177.540.000606
ORF1ab/nsp2336A336VgCtgTt11B.1.177.540.000606
ORF1ab/nsp2336A336VgCtgTt11B.1.177.600.000218
ORF1ab/nsp2336A336DgCtgAt11B.1.177.70.000165
ORF1ab/nsp2336A336VgCtgTt11B.1.177.700.005917
ORF1ab/nsp2336A336VgCtgTt11B.1.177.740.015152
ORF1ab/nsp2336A336VgCtgTt11B.1.177.770.000726
ORF1ab/nsp2336A336DgCtgAt11B.1.177.810.000189
ORF1ab/nsp2336A336SGCTAGC11B.1.20.000009
ORF1ab/nsp2336A336delGCT---11B.1.20.000009
ORF1ab/nsp2336A336VgCtgTt11B.1.214.20.0006
ORF1ab/nsp2336A336AgcTgcC11B.1.2210.000071
ORF1ab/nsp2336A336delGCT---11B.1.221.10.002907
ORF1ab/nsp2336A336VgCtgTt11B.1.2220.001692
ORF1ab/nsp2336A336EgCTgAA11B.1.2340.000132
ORF1ab/nsp2336A336DgCtgAt11B.1.2340.000132
ORF1ab/nsp2336A336AgcTgcA11B.1.2340.000132
ORF1ab/nsp2336A336AgcTgcA11B.1.2410.000812
ORF1ab/nsp2336A336VgCtgTt11B.1.258.30.001675
ORF1ab/nsp2336A336AgcTgcA11B.1.2650.001271
ORF1ab/nsp2336A336VgCtgTt11B.1.2650.001271
ORF1ab/nsp2336A336VgCtgTt11B.1.2790.000514
ORF1ab/nsp2336A336TGctAct11B.1.2980.002114
ORF1ab/nsp2336A336AgcTgcC11B.1.3110.000275
ORF1ab/nsp2336A336SGctTct11B.1.3460.001311
ORF1ab/nsp2336A336VgCtgTt11B.1.3490.000715
ORF1ab/nsp2336A336VgCtgTt11B.1.351.20.000303
ORF1ab/nsp2336A336VgCtgTt11B.1.351.30.000876
ORF1ab/nsp2336A336VgCtgTt11B.1.3560.001727
ORF1ab/nsp2336A336delGCT---11B.1.360.000146
ORF1ab/nsp2336A336VgCtgTt11B.1.36.100.004785
ORF1ab/nsp2336A336VgCtgTt11B.1.36.160.001425
ORF1ab/nsp2336A336VgCtgTt11B.1.36.220.001208
ORF1ab/nsp2336A336SGctTct11B.1.36.290.000517
ORF1ab/nsp2336A336VgCtgTt11B.1.36.310.001751
ORF1ab/nsp2336A336VgCtgTt11B.1.36.70.004
ORF1ab/nsp2336A336VgCtgTt11B.1.36.80.001
ORF1ab/nsp2336A336AgcTgcA11B.1.3610.001289
ORF1ab/nsp2336A336VgCtgTt11B.1.3670.000792
ORF1ab/nsp2336A336SGctTct11B.1.3960.000706
ORF1ab/nsp2336A336PGctCct11B.1.3960.000706
ORF1ab/nsp2336A336VgCtgTt11B.1.4000.000429
ORF1ab/nsp2336A336VgCtgTt11B.1.4030.003268
ORF1ab/nsp2336A336PGctCct11B.1.4270.00005
ORF1ab/nsp2336A336SGctTct11B.1.4290.000024
ORF1ab/nsp2336A336PGctCct11B.1.4290.000024
ORF1ab/nsp2336A336VgCtgTt11B.1.4700.001404
ORF1ab/nsp2336A336VgCtgTt11B.1.4970.000315
ORF1ab/nsp2336A336delGCT---11B.1.5250.000113
ORF1ab/nsp2336A336VgCtgTt11B.1.5440.006024
ORF1ab/nsp2336A336VgCtgTt11B.1.5510.00129
ORF1ab/nsp2336A336VgCtgTt11B.1.5640.000426
ORF1ab/nsp2336A336DgCtgAt11B.1.5810.009434
ORF1ab/nsp2336A336VgCtgTt11B.1.5910.010638
ORF1ab/nsp2336A336SGctTct11B.1.5960.000087
ORF1ab/nsp2336A336TGctAct11B.1.5960.000087
ORF1ab/nsp2336A336VgCtgTt11B.1.6000.005848
ORF1ab/nsp2336A336TGctAct11B.1.6090.000479
ORF1ab/nsp2336A336AgcTgcA11B.1.6090.000479
ORF1ab/nsp2336A336AgcTgcA11B.1.617.10.000129
ORF1ab/nsp2336A336VgCtgTt11B.1.617.10.000129
ORF1ab/nsp2336A336AgcTgcA11B.1.6180.004032
ORF1ab/nsp2336A336AgcTgcA11B.1.6210.000089
ORF1ab/nsp2336A336VgCtgTt11B.1.6270.00202
ORF1ab/nsp2336A336VgCtgTt11B.1.6290.013333
ORF1ab/nsp2336A336VgCtgTt11B.1.6340.003425
ORF1ab/nsp2336A336VgCtgTt11B.1.6360.006711
ORF1ab/nsp2336A336AgcTgcA11B.1.6370.000073
ORF1ab/nsp2336A336VgCtgTt11B.1.930.000934
ORF1ab/nsp2336A336TGctAct11B.40.002208
ORF1ab/nsp2336A336VgCtgTt11B.550.00295
ORF1ab/nsp2336A336VgCtgTt11B.60.00091
ORF1ab/nsp2336A336AgcTgcC11B.60.00091
ORF1ab/nsp2336A336SGctTct11D.20.000075
ORF1ab/nsp2336A336AgcTgcA11N.50.001767
ORF1ab/nsp2336A336LGCTCTA11P.10.000016
ORF1ab/nsp2336A336VgCtgTt11P.1.120.000484
ORF1ab/nsp2336A336AgcTgcC11P.1.150.000232
ORF1ab/nsp2336A336VgCtgTt11P.1.150.000232
ORF1ab/nsp2336A336AgcTgcA11P.1.170.000162
ORF1ab/nsp2336A336VgCtgTt11P.1.170.000162
ORF1ab/nsp2336A336VgCtgTt11P.1.80.004785
ORF1ab/nsp2336A336VgCtgTt11Q.10.000126
ORF1ab/nsp2336A336AgcTgcA11Q.10.000126
ORF1ab/nsp2336A336VgCtgTt11R.10.00009