CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 335

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2335K335QK515QnonsynAaaCaa1562156211808-1810
ORF1ab/nsp2335K335KK515KsynaaAaaG79579511808-1810
ORF1ab/nsp2335K335EK515EnonsynAaaGaa25025011808-1810
ORF1ab/nsp2335K335RK515RnonsynaAaaGa1511500.9933781808-1810
ORF1ab/nsp2335K335RK515RnonsynaAAaGG15110.006622521808-1810
ORF1ab/nsp2335K335NK515NnonsynaaAaaC1321140.8636361808-1810
ORF1ab/nsp2335K335NK515NnonsynaaAaaT132180.1363641808-1810
ORF1ab/nsp2335K335TK515TnonsynaAaaCa68660.9705881808-1810
ORF1ab/nsp2335K335TK515TnonsynaAAaCC6810.01470591808-1810
ORF1ab/nsp2335K335TK515TnonsynaAAaCG6810.01470591808-1810
ORF1ab/nsp2335K335delK515deldelAAA---494911808-1810
ORF1ab/nsp2335K335IK515InonsynaAaaTa101011808-1810
ORF1ab/nsp2335K335del1K515del1delAaa-aa870.8751808-1810
ORF1ab/nsp2335K335del1K515del1delAaAGa-810.1251808-1810
ORF1ab/nsp2335K335GK515GnonsynAAAGGG6611808-1810
ORF1ab/nsp2335K335SK515SnonsynaAAaGT520.41808-1810
ORF1ab/nsp2335K335SK515SnonsynAAATCC510.21808-1810
ORF1ab/nsp2335K335SK515SnonsynAAATCG510.21808-1810
ORF1ab/nsp2335K335SK515SnonsynaAAaGC510.21808-1810
ORF1ab/nsp2335K335VK515VnonsynAAAGTG2211808-1810
ORF1ab/nsp2335K335CK515CnonsynAAATGC1111808-1810
ORF1ab/nsp2335K335WK515WnonsynAAATGG1111808-1810
ORF1ab/nsp2335K335XK515XnonsynAaaTaa1111808-1810
ORF1ab/nsp2335K335del2K515del2delaAAa--1111808-1810

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2335K335QAaaCaa15621562All0.000299
ORF1ab/nsp2335K335QAaaCaa12171217AY.50.02513
ORF1ab/nsp2335K335KaaAaaG795795All0.000152
ORF1ab/nsp2335K335KaaAaaG580580B.1.4040.755208
ORF1ab/nsp2335K335EAaaGaa250250All0.000048
ORF1ab/nsp2335K335QAaaCaa214214AY.1170.018087
ORF1ab/nsp2335K335RaAaaGa150151All0.000029
ORF1ab/nsp2335K335RaAAaGG1151All0
ORF1ab/nsp2335K335EAaaGaa147147AY.430.000651
ORF1ab/nsp2335K335NaaAaaC114132All0.000022
ORF1ab/nsp2335K335NaaAaaT18132All0.000003
ORF1ab/nsp2335K335TaAaaCa6668All0.000013
ORF1ab/nsp2335K335TaAAaCC168All0
ORF1ab/nsp2335K335TaAAaCG168All0
ORF1ab/nsp2335K335QAaaCaa6464B.1.617.20.000241
ORF1ab/nsp2335K335NaaAaaC6163B.1.1.70.000055
ORF1ab/nsp2335K335NaaAaaT263B.1.1.70.000002
ORF1ab/nsp2335K335delAAA---4949All0.000009
ORF1ab/nsp2335K335KaaAaaG4343B.10.000394
ORF1ab/nsp2335K335EAaaGaa4242AY.40.000065
ORF1ab/nsp2335K335KaaAaaG3535AY.40.000054
ORF1ab/nsp2335K335RaAaaGa2828AY.250.000168
ORF1ab/nsp2335K335RaAaaGa2828AY.40.000044
ORF1ab/nsp2335K335QAaaCaa2727B.1.1.70.000024
ORF1ab/nsp2335K335KaaAaaG2222AY.50.000454
ORF1ab/nsp2335K335TaAaaCa2020B.1.1.70.000018
ORF1ab/nsp2335K335KaaAaaG1717B.1.1.70.000015
ORF1ab/nsp2335K335KaaAaaG1717B.1.20.00015
ORF1ab/nsp2335K335TaAaaCa1717B.1.5510.021935
ORF1ab/nsp2335K335delAAA---1515B.1.1.70.000013
ORF1ab/nsp2335K335RaAaaGa1414B.1.617.20.000053
ORF1ab/nsp2335K335NaaAaaC1313AY.40.00002
ORF1ab/nsp2335K335RaAaaGa1212AY.4.20.00026
ORF1ab/nsp2335K335IaAaaTa1010All0.000002
ORF1ab/nsp2335K335TaAaaCa1010AY.60.000411
ORF1ab/nsp2335K335RaAaaGa1010AY.610.001048
ORF1ab/nsp2335K335EAaaGaa99AY.250.000054
ORF1ab/nsp2335K335EAaaGaa99B.1.1.70.000008
ORF1ab/nsp2335K335NaaAaaC89B.1.20.00007
ORF1ab/nsp2335K335NaaAaaT19B.1.20.000009
ORF1ab/nsp2335K335del1Aaa-aa78All0.000001
ORF1ab/nsp2335K335del1AaAGa-18All0
ORF1ab/nsp2335K335RaAaaGa77AY.50.000145
ORF1ab/nsp2335K335EAaaGaa77B.10.000064
ORF1ab/nsp2335K335RaAaaGa77B.1.1.70.000006
ORF1ab/nsp2335K335NaaAaaT77B.1.4270.000353
ORF1ab/nsp2335K335GAAAGGG660.333333
ORF1ab/nsp2335K335GAAAGGG66All0.000001
ORF1ab/nsp2335K335QAaaCaa66AY.1030.000037
ORF1ab/nsp2335K335KaaAaaG66AY.1180.000376
ORF1ab/nsp2335K335NaaAaaC66B.1.617.20.000023
ORF1ab/nsp2335K335SaAAaGT25All0
ORF1ab/nsp2335K335SAAATCC15All0
ORF1ab/nsp2335K335SAAATCG15All0
ORF1ab/nsp2335K335SaAAaGC15All0
ORF1ab/nsp2335K335RaAaaGa55AY.1030.000031
ORF1ab/nsp2335K335QAaaCaa55AY.230.000349
ORF1ab/nsp2335K335RaAaaGa55AY.440.00003
ORF1ab/nsp2335K335KaaAaaG55B.1.5960.000436
ORF1ab/nsp2335K335TaAaaCa44AY.200.000155
ORF1ab/nsp2335K335QAaaCaa44AY.250.000024
ORF1ab/nsp2335K335NaaAaaC44AY.30.00004
ORF1ab/nsp2335K335NaaAaaC44AY.430.000018
ORF1ab/nsp2335K335EAaaGaa44AY.440.000024
ORF1ab/nsp2335K335delAAA---44B.1.1.330.001684
ORF1ab/nsp2335K335IaAaaTa44B.1.1.70.000004
ORF1ab/nsp2335K335delAAA---44B.1.1770.000053
ORF1ab/nsp2335K335NaaAaaT44B.1.1770.000053
ORF1ab/nsp2335K335RaAaaGa44N.90.02381
ORF1ab/nsp2335K335NaaAaaC33AY.250.000018
ORF1ab/nsp2335K335KaaAaaG33AY.250.000018
ORF1ab/nsp2335K335NaaAaaC23AY.390.000049
ORF1ab/nsp2335K335NaaAaaT13AY.390.000025
ORF1ab/nsp2335K335QAaaCaa33AY.40.000005
ORF1ab/nsp2335K335KaaAaaG33AY.430.000013
ORF1ab/nsp2335K335SAAATCC13AY.430.000004
ORF1ab/nsp2335K335SaAAaGC13AY.430.000004
ORF1ab/nsp2335K335SAAATCG13AY.430.000004
ORF1ab/nsp2335K335QAaaCaa33AY.440.000018
ORF1ab/nsp2335K335KaaAaaG33AY.460.000312
ORF1ab/nsp2335K335QAaaCaa33AY.5.40.00083
ORF1ab/nsp2335K335KaaAaaG33B0.000383
ORF1ab/nsp2335K335delAAA---33B.1.1.3480.002389
ORF1ab/nsp2335K335EAaaGaa33B.1.1770.00004
ORF1ab/nsp2335K335KaaAaaG33B.1.2410.002435
ORF1ab/nsp2335K335TaAaaCa33B.1.438.10.000322
ORF1ab/nsp2335K335KaaAaaG33D.20.000225
ORF1ab/nsp2335K335NaaAaaC33P.10.000047
ORF1ab/nsp2335K335EAaaGaa33P.10.000047
ORF1ab/nsp2335K335SaAAaGT220.111111
ORF1ab/nsp2335K335RaAaaGa220.111111
ORF1ab/nsp2335K335VAAAGTG220.111111
ORF1ab/nsp2335K335KaaAaaG22A.190.018868
ORF1ab/nsp2335K335VAAAGTG22All0
ORF1ab/nsp2335K335KaaAaaG22AY.1020.000053
ORF1ab/nsp2335K335RaAaaGa22AY.230.000139
ORF1ab/nsp2335K335KaaAaaG22AY.290.000032
ORF1ab/nsp2335K335NaaAaaC22AY.290.000032
ORF1ab/nsp2335K335delAAA---22AY.40.000003
ORF1ab/nsp2335K335KaaAaaG22AY.4.20.000043
ORF1ab/nsp2335K335TaAAaCC12AY.430.000004
ORF1ab/nsp2335K335TaAAaCG12AY.430.000004
ORF1ab/nsp2335K335KaaAaaG22AY.440.000012
ORF1ab/nsp2335K335NaaAaaC22AY.440.000012
ORF1ab/nsp2335K335QAaaCaa22AY.5.30.000675
ORF1ab/nsp2335K335KaaAaaG22AY.5.40.000553
ORF1ab/nsp2335K335QAaaCaa22B0.000256
ORF1ab/nsp2335K335EAaaGaa22B.1.10.000036
ORF1ab/nsp2335K335KaaAaaG22B.1.1460.008475
ORF1ab/nsp2335K335EAaaGaa22B.1.160.80.002577
ORF1ab/nsp2335K335del1Aaa-aa22B.1.1770.000026
ORF1ab/nsp2335K335TaAaaCa22B.1.177.100.001756
ORF1ab/nsp2335K335RaAaaGa22B.1.20.000018
ORF1ab/nsp2335K335del1Aaa-aa22B.1.20.000018
ORF1ab/nsp2335K335KaaAaaG22B.1.2400.000431
ORF1ab/nsp2335K335IaAaaTa22B.1.3510.000059
ORF1ab/nsp2335K335KaaAaaG22B.1.360.000292
ORF1ab/nsp2335K335RaAaaGa22B.1.4290.000047
ORF1ab/nsp2335K335KaaAaaG22B.1.4290.000047
ORF1ab/nsp2335K335KaaAaaG22B.1.5300.014286
ORF1ab/nsp2335K335TaAaaCa22B.1.5600.009259
ORF1ab/nsp2335K335QAaaCaa22B.1.5750.000607
ORF1ab/nsp2335K335RaAaaGa22B.1.5960.000174
ORF1ab/nsp2335K335EAaaGaa22B.1.617.20.000008
ORF1ab/nsp2335K335KaaAaaG22C.370.000232
ORF1ab/nsp2335K335delAAA---22N.60.014184
ORF1ab/nsp2335K335delAAA---22P.20.000373
ORF1ab/nsp2335K335EAaaGaa22Q.10.000253
ORF1ab/nsp2335K335EAaaGaa11A.10.000282
ORF1ab/nsp2335K335RaAaaGa11A.2.50.000499
ORF1ab/nsp2335K335del2aAAa--11All0
ORF1ab/nsp2335K335WAAATGG11All0
ORF1ab/nsp2335K335CAAATGC11All0
ORF1ab/nsp2335K335XAaaTaa11All0
ORF1ab/nsp2335K335RaAaaGa11AY.1020.000027
ORF1ab/nsp2335K335EAaaGaa11AY.1030.000006
ORF1ab/nsp2335K335KaaAaaG11AY.1100.000113
ORF1ab/nsp2335K335NaaAaaC11AY.1110.000183
ORF1ab/nsp2335K335delAAA---11AY.1110.000183
ORF1ab/nsp2335K335QAaaCaa11AY.1110.000183
ORF1ab/nsp2335K335del1AaAGa-11AY.1130.000142
ORF1ab/nsp2335K335RaAaaGa11AY.120.2.10.000498
ORF1ab/nsp2335K335KaaAaaG11AY.1210.000135
ORF1ab/nsp2335K335QAaaCaa11AY.140.000088
ORF1ab/nsp2335K335NaaAaaC11AY.20.000356
ORF1ab/nsp2335K335QAaaCaa11AY.200.000039
ORF1ab/nsp2335K335delAAA---11AY.250.000006
ORF1ab/nsp2335K335delAAA---11AY.290.000016
ORF1ab/nsp2335K335EAaaGaa11AY.29.10.000221
ORF1ab/nsp2335K335EAaaGaa11AY.30.00001
ORF1ab/nsp2335K335EAaaGaa11AY.3.10.000085
ORF1ab/nsp2335K335NaaAaaC11AY.360.000148
ORF1ab/nsp2335K335EAaaGaa11AY.390.000025
ORF1ab/nsp2335K335QAaaCaa11AY.390.000025
ORF1ab/nsp2335K335KaaAaaG11AY.39.10.00004
ORF1ab/nsp2335K335RaAaaGa11AY.39.20.001541
ORF1ab/nsp2335K335delAAA---11AY.4.50.000107
ORF1ab/nsp2335K335KaaAaaG11AY.420.00004
ORF1ab/nsp2335K335RaAAaGG11AY.430.000004
ORF1ab/nsp2335K335IaAaaTa11AY.430.000004
ORF1ab/nsp2335K335CAAATGC11AY.430.000004
ORF1ab/nsp2335K335WAAATGG11AY.430.000004
ORF1ab/nsp2335K335delAAA---11AY.430.000004
ORF1ab/nsp2335K335delAAA---11AY.440.000006
ORF1ab/nsp2335K335del2aAAa--11AY.440.000006
ORF1ab/nsp2335K335KaaAaaG11AY.450.000122
ORF1ab/nsp2335K335delAAA---11AY.46.60.000072
ORF1ab/nsp2335K335NaaAaaC11AY.50.000021
ORF1ab/nsp2335K335TaAaaCa11AY.50.000021
ORF1ab/nsp2335K335KaaAaaG11AY.590.00053
ORF1ab/nsp2335K335delAAA---11AY.670.000464
ORF1ab/nsp2335K335EAaaGaa11AY.690.000187
ORF1ab/nsp2335K335RaAaaGa11AY.720.001361
ORF1ab/nsp2335K335KaaAaaG11AY.840.000437
ORF1ab/nsp2335K335delAAA---11AY.840.000437
ORF1ab/nsp2335K335QAaaCaa11AY.9.20.000037
ORF1ab/nsp2335K335delAAA---11AY.9.20.000037
ORF1ab/nsp2335K335RaAaaGa11AY.930.000273
ORF1ab/nsp2335K335RaAaaGa11AY.98.10.000048
ORF1ab/nsp2335K335delAAA---11AY.990.001049
ORF1ab/nsp2335K335RaAaaGa11AZ.30.00152
ORF1ab/nsp2335K335IaAaaTa11B0.000128
ORF1ab/nsp2335K335QAaaCaa11B.10.000009
ORF1ab/nsp2335K335del1Aaa-aa11B.10.000009
ORF1ab/nsp2335K335RaAaaGa11B.10.000009
ORF1ab/nsp2335K335NaaAaaC11B.10.000009
ORF1ab/nsp2335K335IaAaaTa11B.1.10.000018
ORF1ab/nsp2335K335delAAA---11B.1.10.000018
ORF1ab/nsp2335K335RaAaaGa11B.1.10.000018
ORF1ab/nsp2335K335KaaAaaG11B.1.10.000018
ORF1ab/nsp2335K335EAaaGaa11B.1.1.2140.000055
ORF1ab/nsp2335K335NaaAaaT11B.1.1.280.000311
ORF1ab/nsp2335K335delAAA---11B.1.1.2840.000107
ORF1ab/nsp2335K335NaaAaaC11B.1.1.3060.000438
ORF1ab/nsp2335K335RaAaaGa11B.1.1.3110.000358
ORF1ab/nsp2335K335TaAaaCa11B.1.1.3540.004386
ORF1ab/nsp2335K335KaaAaaG11B.1.1.3720.000689
ORF1ab/nsp2335K335EAaaGaa11B.1.1.3760.005952
ORF1ab/nsp2335K335RaAaaGa11B.1.1.4090.002833
ORF1ab/nsp2335K335EAaaGaa11B.1.1.4130.006897
ORF1ab/nsp2335K335TaAaaCa11B.1.1.4340.000349
ORF1ab/nsp2335K335RaAaaGa11B.1.1.5190.00004
ORF1ab/nsp2335K335NaaAaaT11B.1.1.610.008772
ORF1ab/nsp2335K335KaaAaaG11B.1.1600.000031
ORF1ab/nsp2335K335QAaaCaa11B.1.1600.000031
ORF1ab/nsp2335K335del1Aaa-aa11B.1.1600.000031
ORF1ab/nsp2335K335KaaAaaG11B.1.160.160.000929
ORF1ab/nsp2335K335QAaaCaa11B.1.1770.000013
ORF1ab/nsp2335K335RaAaaGa11B.1.1770.000013
ORF1ab/nsp2335K335KaaAaaG11B.1.1770.000013
ORF1ab/nsp2335K335KaaAaaG11B.1.177.230.003236
ORF1ab/nsp2335K335RaAaaGa11B.1.177.440.000519
ORF1ab/nsp2335K335EAaaGaa11B.1.177.460.000918
ORF1ab/nsp2335K335del1Aaa-aa11B.1.177.570.000281
ORF1ab/nsp2335K335TaAaaCa11B.1.177.600.000218
ORF1ab/nsp2335K335QAaaCaa11B.1.177.800.001912
ORF1ab/nsp2335K335QAaaCaa11B.1.20.000009
ORF1ab/nsp2335K335EAaaGaa11B.1.20.000009
ORF1ab/nsp2335K335delAAA---11B.1.20.000009
ORF1ab/nsp2335K335delAAA---11B.1.221.10.002907
ORF1ab/nsp2335K335KaaAaaG11B.1.2340.000132
ORF1ab/nsp2335K335RaAaaGa11B.1.2410.000812
ORF1ab/nsp2335K335NaaAaaT11B.1.2430.00007
ORF1ab/nsp2335K335EAaaGaa11B.1.2430.00007
ORF1ab/nsp2335K335KaaAaaG11B.1.2430.00007
ORF1ab/nsp2335K335RaAaaGa11B.1.3510.00003
ORF1ab/nsp2335K335delAAA---11B.1.360.000146
ORF1ab/nsp2335K335KaaAaaG11B.1.3690.000285
ORF1ab/nsp2335K335EAaaGaa11B.1.3770.004566
ORF1ab/nsp2335K335KaaAaaG11B.1.4270.00005
ORF1ab/nsp2335K335EAaaGaa11B.1.4270.00005
ORF1ab/nsp2335K335IaAaaTa11B.1.4290.000024
ORF1ab/nsp2335K335EAaaGaa11B.1.466.20.000391
ORF1ab/nsp2335K335KaaAaaG11B.1.5040.03125
ORF1ab/nsp2335K335delAAA---11B.1.5250.000113
ORF1ab/nsp2335K335KaaAaaG11B.1.5250.000113
ORF1ab/nsp2335K335KaaAaaG11B.1.5260.000024
ORF1ab/nsp2335K335TaAaaCa11B.1.5260.000024
ORF1ab/nsp2335K335RaAaaGa11B.1.5260.000024
ORF1ab/nsp2335K335KaaAaaG11B.1.5610.000397
ORF1ab/nsp2335K335XAaaTaa11B.1.5750.000303
ORF1ab/nsp2335K335KaaAaaG11B.1.5800.004065
ORF1ab/nsp2335K335KaaAaaG11B.1.5820.000491
ORF1ab/nsp2335K335KaaAaaG11B.1.5950.000261
ORF1ab/nsp2335K335TaAaaCa11B.1.6210.000089
ORF1ab/nsp2335K335KaaAaaG11B.1.810.021277
ORF1ab/nsp2335K335EAaaGaa11B.1.9.50.005682
ORF1ab/nsp2335K335KaaAaaG11B.1.910.002075
ORF1ab/nsp2335K335TaAaaCa11C.10.002392
ORF1ab/nsp2335K335RaAaaGa11D.20.000075
ORF1ab/nsp2335K335KaaAaaG11P.10.000016
ORF1ab/nsp2335K335TaAaaCa11P.1.10.000318
ORF1ab/nsp2335K335RaAaaGa11P.1.150.000232
ORF1ab/nsp2335K335EAaaGaa11P.1.170.000162
ORF1ab/nsp2335K335KaaAaaG11P.30.001595