CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 332

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2332T332IT512InonsynaCaaTa4294280.9976691799-1801
ORF1ab/nsp2332T332IT512InonsynaCAaTC42910.0023311799-1801
ORF1ab/nsp2332T332TT512TsynacAacG197850.4314721799-1801
ORF1ab/nsp2332T332TT512TsynacAacT197680.3451781799-1801
ORF1ab/nsp2332T332TT512TsynacAacC197440.223351799-1801
ORF1ab/nsp2332T332AT512AnonsynAcaGca1341330.9925371799-1801
ORF1ab/nsp2332T332AT512AnonsynAcAGcG13410.007462691799-1801
ORF1ab/nsp2332T332KT512KnonsynaCaaAa1261240.9841271799-1801
ORF1ab/nsp2332T332KT512KnonsynaCAaAG12620.0158731799-1801
ORF1ab/nsp2332T332delT512deldelACA---535311799-1801
ORF1ab/nsp2332T332RT512RnonsynaCaaGa313111799-1801
ORF1ab/nsp2332T332del1T512del1delacAac-25240.961799-1801
ORF1ab/nsp2332T332del1T512del1delACa-Ta2510.041799-1801
ORF1ab/nsp2332T332ST512SnonsynaCAaGT520.41799-1801
ORF1ab/nsp2332T332ST512SnonsynAcaTca520.41799-1801
ORF1ab/nsp2332T332ST512SnonsynAcATcC510.21799-1801
ORF1ab/nsp2332T332PT512PnonsynAcaCca2211799-1801
ORF1ab/nsp2332T332del2T512del2delaCAa--2211799-1801
ORF1ab/nsp2332T332NT512NnonsynaCAaAT2211799-1801
ORF1ab/nsp2332T332LT512LnonsynACaTTa1111799-1801
ORF1ab/nsp2332T332GT512GnonsynACaGGa1111799-1801

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2332T332IaCaaTa428429All0.000082
ORF1ab/nsp2332T332IaCAaTC1429All0
ORF1ab/nsp2332T332TacAacG85197All0.000016
ORF1ab/nsp2332T332TacAacT68197All0.000013
ORF1ab/nsp2332T332TacAacC44197All0.000008
ORF1ab/nsp2332T332AAcaGca133134All0.000025
ORF1ab/nsp2332T332AAcAGcG1134All0
ORF1ab/nsp2332T332KaCaaAa124126All0.000024
ORF1ab/nsp2332T332KaCAaAG2126All0
ORF1ab/nsp2332T332IaCaaTa113113B.1.1.70.000101
ORF1ab/nsp2332T332AAcaGca7070B.1.1.70.000063
ORF1ab/nsp2332T332IaCaaTa6969AY.40.000107
ORF1ab/nsp2332T332delACA---5353All0.00001
ORF1ab/nsp2332T332TacAacT4151B.1.617.20.000154
ORF1ab/nsp2332T332TacAacG751B.1.617.20.000026
ORF1ab/nsp2332T332TacAacC351B.1.617.20.000011
ORF1ab/nsp2332T332TacAacC3737AY.1190.001306
ORF1ab/nsp2332T332RaCaaGa3131All0.000006
ORF1ab/nsp2332T332RaCaaGa2828AY.260.000793
ORF1ab/nsp2332T332del1acAac-2425All0.000005
ORF1ab/nsp2332T332del1ACa-Ta125All0
ORF1ab/nsp2332T332IaCaaTa2323AY.1180.001441
ORF1ab/nsp2332T332KaCaaAa2121AY.40.000033
ORF1ab/nsp2332T332KaCaaAa2020B.1.1.2030.338983
ORF1ab/nsp2332T332TacAacG1218B.1.1.70.000011
ORF1ab/nsp2332T332TacAacT618B.1.1.70.000005
ORF1ab/nsp2332T332KaCaaAa1616A.2.5.10.076923
ORF1ab/nsp2332T332delACA---1616B.1.1.70.000014
ORF1ab/nsp2332T332IaCaaTa1515B.1.1.5190.000596
ORF1ab/nsp2332T332KaCaaAa1515B.1.1.70.000013
ORF1ab/nsp2332T332TacAacG1113AY.260.000311
ORF1ab/nsp2332T332TacAacT213AY.260.000057
ORF1ab/nsp2332T332IaCaaTa1313B.1.4530.042071
ORF1ab/nsp2332T332IaCaaTa1212AY.670.005571
ORF1ab/nsp2332T332AAcaGca1212B.1.617.20.000045
ORF1ab/nsp2332T332AAcaGca1111AY.1030.000068
ORF1ab/nsp2332T332TacAacG1111AY.250.000066
ORF1ab/nsp2332T332IaCaaTa1010AZ.40.033557
ORF1ab/nsp2332T332IaCaaTa99B.10.000082
ORF1ab/nsp2332T332KaCaaAa680.333333
ORF1ab/nsp2332T332KaCAaAG280.111111
ORF1ab/nsp2332T332IaCaaTa88AY.4.20.000174
ORF1ab/nsp2332T332IaCaaTa78AY.430.000031
ORF1ab/nsp2332T332IaCAaTC18AY.430.000004
ORF1ab/nsp2332T332IaCaaTa88B.1.1.2910.005939
ORF1ab/nsp2332T332IaCaaTa88B.1.1600.00025
ORF1ab/nsp2332T332IaCaaTa88P.10.000126
ORF1ab/nsp2332T332TacAacG77B.1.1600.000218
ORF1ab/nsp2332T332AAcaGca77B.1.177.600.001529
ORF1ab/nsp2332T332IaCaaTa66AY.1030.000037
ORF1ab/nsp2332T332TacAacG36AY.30.00003
ORF1ab/nsp2332T332TacAacC26AY.30.00002
ORF1ab/nsp2332T332TacAacT16AY.30.00001
ORF1ab/nsp2332T332IaCaaTa66B.1.10.000109
ORF1ab/nsp2332T332IaCaaTa66B.1.110.10.6
ORF1ab/nsp2332T332IaCaaTa66B.1.1770.000079
ORF1ab/nsp2332T332TacAacG66B.1.2150.057692
ORF1ab/nsp2332T332IaCaaTa66B.1.617.20.000023
ORF1ab/nsp2332T332SAcaTca25All0
ORF1ab/nsp2332T332SaCAaGT25All0
ORF1ab/nsp2332T332SAcATcC15All0
ORF1ab/nsp2332T332IaCaaTa55AY.250.00003
ORF1ab/nsp2332T332TacAacG35AY.430.000013
ORF1ab/nsp2332T332TacAacT25AY.430.000009
ORF1ab/nsp2332T332IaCaaTa55AY.98.10.000242
ORF1ab/nsp2332T332IaCaaTa55B.1.4290.000118
ORF1ab/nsp2332T332KaCaaAa44AY.250.000024
ORF1ab/nsp2332T332IaCaaTa44AY.390.000099
ORF1ab/nsp2332T332TacAacG34AY.40.000005
ORF1ab/nsp2332T332TacAacT14AY.40.000002
ORF1ab/nsp2332T332KaCaaAa44AY.430.000018
ORF1ab/nsp2332T332IaCaaTa44AY.440.000024
ORF1ab/nsp2332T332AAcaGca44AY.470.000124
ORF1ab/nsp2332T332IaCaaTa44AY.99.20.000369
ORF1ab/nsp2332T332delACA---44B.1.1.330.001684
ORF1ab/nsp2332T332del1acAac-44B.1.1.70.000004
ORF1ab/nsp2332T332delACA---44B.1.1770.000053
ORF1ab/nsp2332T332IaCaaTa44B.1.4160.005076
ORF1ab/nsp2332T332IaCaaTa44B.1.4760.4
ORF1ab/nsp2332T332IaCaaTa44B.1.6370.000292
ORF1ab/nsp2332T332IaCaaTa44D.20.0003
ORF1ab/nsp2332T332TacAacG33AY.1020.00008
ORF1ab/nsp2332T332TacAacT23AY.1030.000012
ORF1ab/nsp2332T332TacAacG13AY.1030.000006
ORF1ab/nsp2332T332IaCaaTa33AY.1190.000106
ORF1ab/nsp2332T332KaCaaAa33AY.1190.000106
ORF1ab/nsp2332T332KaCaaAa33AY.46.60.000217
ORF1ab/nsp2332T332IaCaaTa33AY.500.002398
ORF1ab/nsp2332T332KaCaaAa33B.10.000027
ORF1ab/nsp2332T332delACA---33B.1.1.3480.002389
ORF1ab/nsp2332T332TacAacG33B.1.160.140.006356
ORF1ab/nsp2332T332del1acAac-33B.1.20.000026
ORF1ab/nsp2332T332TacAacG33B.1.4290.000071
ORF1ab/nsp2332T332KaCaaAa33B.1.617.20.000011
ORF1ab/nsp2332T332IaCaaTa33Q.10.000379
ORF1ab/nsp2332T332SaCAaGT220.111111
ORF1ab/nsp2332T332IaCaaTa220.111111
ORF1ab/nsp2332T332RaCaaGa220.111111
ORF1ab/nsp2332T332NaCAaAT220.111111
ORF1ab/nsp2332T332KaCaaAa22A0.000774
ORF1ab/nsp2332T332IaCaaTa22A.10.000564
ORF1ab/nsp2332T332PAcaCca22All0
ORF1ab/nsp2332T332del2aCAa--22All0
ORF1ab/nsp2332T332NaCAaAT22All0
ORF1ab/nsp2332T332IaCaaTa22AY.1040.003968
ORF1ab/nsp2332T332TacAacG22AY.130.000322
ORF1ab/nsp2332T332AAcaGca22AY.30.00002
ORF1ab/nsp2332T332IaCaaTa22AY.30.00002
ORF1ab/nsp2332T332delACA---22AY.40.000003
ORF1ab/nsp2332T332delACA---22AY.4.50.000215
ORF1ab/nsp2332T332AAcaGca22AY.430.000009
ORF1ab/nsp2332T332del1acAac-22AY.440.000012
ORF1ab/nsp2332T332AAcAGcG12AY.440.000006
ORF1ab/nsp2332T332AAcaGca12AY.440.000006
ORF1ab/nsp2332T332KaCaaAa22AY.480.00093
ORF1ab/nsp2332T332AAcaGca22AY.490.00639
ORF1ab/nsp2332T332KaCaaAa22AY.540.000191
ORF1ab/nsp2332T332del1acAac-22AY.540.000191
ORF1ab/nsp2332T332IaCaaTa22AY.60.000082
ORF1ab/nsp2332T332del1acAac-22B.10.000018
ORF1ab/nsp2332T332del1acAac-22B.1.10.000036
ORF1ab/nsp2332T332AAcaGca22B.1.1600.000062
ORF1ab/nsp2332T332KaCaaAa22B.1.1770.000026
ORF1ab/nsp2332T332KaCaaAa22B.1.20.000018
ORF1ab/nsp2332T332IaCaaTa22B.1.20.000018
ORF1ab/nsp2332T332TacAacC12B.1.20.000009
ORF1ab/nsp2332T332TacAacT12B.1.20.000009
ORF1ab/nsp2332T332TacAacT22B.1.4700.002809
ORF1ab/nsp2332T332IaCaaTa22B.1.4870.039216
ORF1ab/nsp2332T332AAcaGca22B.1.5260.000047
ORF1ab/nsp2332T332AAcaGca22B.1.5760.001813
ORF1ab/nsp2332T332del1acAac-22B.1.617.20.000008
ORF1ab/nsp2332T332delACA---22N.60.014184
ORF1ab/nsp2332T332delACA---22P.20.000373
ORF1ab/nsp2332T332IaCaaTa22Q.80.00033
ORF1ab/nsp2332T332AAcaGca11A.210.00277
ORF1ab/nsp2332T332GACaGGa11All0
ORF1ab/nsp2332T332LACaTTa11All0
ORF1ab/nsp2332T332IaCaaTa11AY.1000.000046
ORF1ab/nsp2332T332AAcaGca11AY.1020.000027
ORF1ab/nsp2332T332del1acAac-11AY.1030.000006
ORF1ab/nsp2332T332IaCaaTa11AY.1080.001103
ORF1ab/nsp2332T332AAcaGca11AY.1110.000183
ORF1ab/nsp2332T332delACA---11AY.1110.000183
ORF1ab/nsp2332T332delACA---11AY.1130.000142
ORF1ab/nsp2332T332TacAacG11AY.1130.000142
ORF1ab/nsp2332T332AAcaGca11AY.1180.000063
ORF1ab/nsp2332T332IaCaaTa11AY.1200.000037
ORF1ab/nsp2332T332AAcaGca11AY.1200.000037
ORF1ab/nsp2332T332del1acAac-11AY.120.10.000321
ORF1ab/nsp2332T332TacAacT11AY.1210.000135
ORF1ab/nsp2332T332del1acAac-11AY.20.000356
ORF1ab/nsp2332T332TacAacT11AY.200.000039
ORF1ab/nsp2332T332IaCaaTa11AY.200.000039
ORF1ab/nsp2332T332IaCaaTa11AY.230.00007
ORF1ab/nsp2332T332KaCaaAa11AY.230.00007
ORF1ab/nsp2332T332AAcaGca11AY.250.000006
ORF1ab/nsp2332T332delACA---11AY.250.000006
ORF1ab/nsp2332T332IaCaaTa11AY.260.000028
ORF1ab/nsp2332T332IaCaaTa11AY.290.000016
ORF1ab/nsp2332T332delACA---11AY.290.000016
ORF1ab/nsp2332T332KaCaaAa11AY.290.000016
ORF1ab/nsp2332T332KaCaaAa11AY.340.000097
ORF1ab/nsp2332T332IaCaaTa11AY.340.000097
ORF1ab/nsp2332T332AAcaGca11AY.360.000148
ORF1ab/nsp2332T332AAcaGca11AY.39.10.00004
ORF1ab/nsp2332T332IaCaaTa11AY.39.20.001541
ORF1ab/nsp2332T332AAcaGca11AY.40.000002
ORF1ab/nsp2332T332KaCaaAa11AY.4.20.000022
ORF1ab/nsp2332T332IaCaaTa11AY.4.40.000409
ORF1ab/nsp2332T332IaCaaTa11AY.420.00004
ORF1ab/nsp2332T332delACA---11AY.430.000004
ORF1ab/nsp2332T332delACA---11AY.440.000006
ORF1ab/nsp2332T332KaCaaAa11AY.440.000006
ORF1ab/nsp2332T332LACaTTa11AY.450.000122
ORF1ab/nsp2332T332IaCaaTa11AY.450.000122
ORF1ab/nsp2332T332SAcaTca11AY.450.000122
ORF1ab/nsp2332T332TacAacG11AY.460.000104
ORF1ab/nsp2332T332del1acAac-11AY.46.10.001027
ORF1ab/nsp2332T332IaCaaTa11AY.46.40.000165
ORF1ab/nsp2332T332delACA---11AY.46.60.000072
ORF1ab/nsp2332T332IaCaaTa11AY.470.000031
ORF1ab/nsp2332T332KaCaaAa11AY.50.000021
ORF1ab/nsp2332T332TacAacG11AY.540.000095
ORF1ab/nsp2332T332TacAacG11AY.580.000907
ORF1ab/nsp2332T332AAcaGca11AY.610.000105
ORF1ab/nsp2332T332IaCaaTa11AY.610.000105
ORF1ab/nsp2332T332delACA---11AY.670.000464
ORF1ab/nsp2332T332KaCaaAa11AY.740.000116
ORF1ab/nsp2332T332TacAacT11AY.750.000056
ORF1ab/nsp2332T332delACA---11AY.840.000437
ORF1ab/nsp2332T332delACA---11AY.9.20.000037
ORF1ab/nsp2332T332AAcaGca11AY.9.20.000037
ORF1ab/nsp2332T332TacAacC11AY.9.20.000037
ORF1ab/nsp2332T332IaCaaTa11AY.920.000287
ORF1ab/nsp2332T332IaCaaTa11AY.930.000273
ORF1ab/nsp2332T332KaCaaAa11AY.980.000079
ORF1ab/nsp2332T332delACA---11AY.990.001049
ORF1ab/nsp2332T332AAcaGca11B.10.000009
ORF1ab/nsp2332T332TacAacG11B.10.000009
ORF1ab/nsp2332T332GACaGGa11B.10.000009
ORF1ab/nsp2332T332RaCaaGa11B.10.000009
ORF1ab/nsp2332T332del2aCAa--11B.1.10.000018
ORF1ab/nsp2332T332IaCaaTa11B.1.1.1010.01
ORF1ab/nsp2332T332IaCaaTa11B.1.1.2140.000055
ORF1ab/nsp2332T332delACA---11B.1.1.2840.000107
ORF1ab/nsp2332T332TacAacT11B.1.1.3170.000412
ORF1ab/nsp2332T332AAcaGca11B.1.1.330.000421
ORF1ab/nsp2332T332IaCaaTa11B.1.1.3560.008547
ORF1ab/nsp2332T332TacAacT11B.1.1.5190.00004
ORF1ab/nsp2332T332TacAacG11B.1.1.540.003021
ORF1ab/nsp2332T332KaCaaAa11B.1.1.580.005376
ORF1ab/nsp2332T332SAcATcC11B.1.1.70.000001
ORF1ab/nsp2332T332PAcaCca11B.1.110.30.000718
ORF1ab/nsp2332T332del1ACa-Ta11B.1.110.30.000718
ORF1ab/nsp2332T332IaCaaTa11B.1.1240.007812
ORF1ab/nsp2332T332delACA---11B.1.1600.000031
ORF1ab/nsp2332T332del2aCAa--11B.1.1770.000013
ORF1ab/nsp2332T332TacAacT11B.1.177.570.000281
ORF1ab/nsp2332T332delACA---11B.1.177.570.000281
ORF1ab/nsp2332T332AAcaGca11B.1.2210.000071
ORF1ab/nsp2332T332delACA---11B.1.221.10.002907
ORF1ab/nsp2332T332IaCaaTa11B.1.2400.000216
ORF1ab/nsp2332T332TacAacG11B.1.2580.000067
ORF1ab/nsp2332T332KaCaaAa11B.1.2800.007143
ORF1ab/nsp2332T332AAcaGca11B.1.3510.00003
ORF1ab/nsp2332T332delACA---11B.1.360.000146
ORF1ab/nsp2332T332IaCaaTa11B.1.36.160.001425
ORF1ab/nsp2332T332AAcaGca11B.1.36.290.000517
ORF1ab/nsp2332T332PAcaCca11B.1.4290.000024
ORF1ab/nsp2332T332IaCaaTa11B.1.4700.001404
ORF1ab/nsp2332T332KaCaaAa11B.1.4970.000315
ORF1ab/nsp2332T332TacAacG11B.1.5250.000113
ORF1ab/nsp2332T332delACA---11B.1.5250.000113
ORF1ab/nsp2332T332KaCaaAa11B.1.5260.000024
ORF1ab/nsp2332T332IaCaaTa11B.1.5260.000024
ORF1ab/nsp2332T332del1acAac-11B.1.5260.000024
ORF1ab/nsp2332T332TacAacT11B.1.5760.000907
ORF1ab/nsp2332T332del1acAac-11B.1.5800.004065
ORF1ab/nsp2332T332del1acAac-11B.1.5960.000087
ORF1ab/nsp2332T332IaCaaTa11B.1.5960.000087
ORF1ab/nsp2332T332KaCaaAa11B.1.5960.000087
ORF1ab/nsp2332T332TacAacT11B.1.6060.006024
ORF1ab/nsp2332T332SAcaTca11B.1.617.20.000004
ORF1ab/nsp2332T332IaCaaTa11B.1.6210.000089
ORF1ab/nsp2332T332TacAacT11B.1.6210.000089
ORF1ab/nsp2332T332TacAacT11B.1.940.027027
ORF1ab/nsp2332T332delACA---11B.340.013699
ORF1ab/nsp2332T332KaCaaAa11C.160.00106
ORF1ab/nsp2332T332TacAacG11C.370.000116
ORF1ab/nsp2332T332KaCaaAa11P.10.000016
ORF1ab/nsp2332T332KaCaaAa11P.1.140.000048
ORF1ab/nsp2332T332TacAacG11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.