CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 325

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2325S325SS505SsyntcCtcT144113400.929911778-1780
ORF1ab/nsp2325S325SS505SsyntcCtcA1441950.06592641778-1780
ORF1ab/nsp2325S325SS505SsyntcCtcG144160.004163781778-1780
ORF1ab/nsp2325S325FS505FnonsyntCctTc1064106411778-1780
ORF1ab/nsp2325S325PS505PnonsynTccCcc5045010.9940481778-1780
ORF1ab/nsp2325S325PS505PnonsynTcCCcG50420.003968251778-1780
ORF1ab/nsp2325S325PS505PnonsynTcCCcT50410.001984131778-1780
ORF1ab/nsp2325S325delS505deldelTCC---494911778-1780
ORF1ab/nsp2325S325YS505YnonsyntCctAc46430.9347831778-1780
ORF1ab/nsp2325S325YS505YnonsyntCCtAT4630.06521741778-1780
ORF1ab/nsp2325S325AS505AnonsynTccGcc212111778-1780
ORF1ab/nsp2325S325CS505CnonsyntCctGc7711778-1780
ORF1ab/nsp2325S325TS505TnonsynTccAcc640.6666671778-1780
ORF1ab/nsp2325S325TS505TnonsynTcCAcG620.3333331778-1780
ORF1ab/nsp2325S325DS505DnonsynTCCGAT420.51778-1780
ORF1ab/nsp2325S325LS505LnonsynTCcCTc420.51778-1780
ORF1ab/nsp2325S325DS505DnonsynTCcGAc420.51778-1780
ORF1ab/nsp2325S325LS505LnonsynTCCCTT420.51778-1780
ORF1ab/nsp2325S325del1S505del1delTcc-cc320.6666671778-1780
ORF1ab/nsp2325S325del1S505del1deltCct-c310.3333331778-1780
ORF1ab/nsp2325S325del2S505del2deltCCt--210.51778-1780
ORF1ab/nsp2325S325del2S505del2delTCc--c210.51778-1780
ORF1ab/nsp2325S325HS505HnonsynTCCCAT210.51778-1780
ORF1ab/nsp2325S325HS505HnonsynTCcCAc210.51778-1780
ORF1ab/nsp2325S325IS505InonsynTCcATc1111778-1780
ORF1ab/nsp2325S325NS505NnonsynTCcAAc1111778-1780

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2325S325StcCtcT13401441All0.000256
ORF1ab/nsp2325S325StcCtcA951441All0.000018
ORF1ab/nsp2325S325StcCtcG61441All0.000001
ORF1ab/nsp2325S325FtCctTc10641064All0.000204
ORF1ab/nsp2325S325PTccCcc501504All0.000096
ORF1ab/nsp2325S325PTcCCcG2504All0
ORF1ab/nsp2325S325PTcCCcT1504All0
ORF1ab/nsp2325S325StcCtcT334337B.1.617.20.001258
ORF1ab/nsp2325S325StcCtcA3337B.1.617.20.000011
ORF1ab/nsp2325S325PTccCcc254254AY.1030.001577
ORF1ab/nsp2325S325StcCtcT190217B.1.1.70.00017
ORF1ab/nsp2325S325StcCtcA26217B.1.1.70.000023
ORF1ab/nsp2325S325StcCtcG1217B.1.1.70.000001
ORF1ab/nsp2325S325FtCctTc193193B.1.1.70.000173
ORF1ab/nsp2325S325StcCtcT170170AY.39.10.006734
ORF1ab/nsp2325S325FtCctTc113113AY.4.20.002451
ORF1ab/nsp2325S325FtCctTc9999B.1.1.1810.45
ORF1ab/nsp2325S325FtCctTc9595AY.1030.00059
ORF1ab/nsp2325S325FtCctTc8888B.1.177.860.016144
ORF1ab/nsp2325S325StcCtcT7070B.1.5960.0061
ORF1ab/nsp2325S325StcCtcT5661AY.40.000087
ORF1ab/nsp2325S325StcCtcA461AY.40.000006
ORF1ab/nsp2325S325StcCtcG161AY.40.000002
ORF1ab/nsp2325S325StcCtcT5959AY.1000.002714
ORF1ab/nsp2325S325PTccCcc5555B.1.617.20.000207
ORF1ab/nsp2325S325PTccCcc5252B.1.1.70.000047
ORF1ab/nsp2325S325StcCtcT5050C.370.005803
ORF1ab/nsp2325S325delTCC---4949All0.000009
ORF1ab/nsp2325S325FtCctTc4747B.1.617.20.000177
ORF1ab/nsp2325S325YtCctAc4346All0.000008
ORF1ab/nsp2325S325YtCCtAT346All0.000001
ORF1ab/nsp2325S325FtCctTc3939B.1.10.000707
ORF1ab/nsp2325S325StcCtcT3438AY.440.000207
ORF1ab/nsp2325S325StcCtcA438AY.440.000024
ORF1ab/nsp2325S325PTccCcc3333AY.40.000051
ORF1ab/nsp2325S325FtCctTc3333B.10.000302
ORF1ab/nsp2325S325StcCtcT3333B.1.177.600.007208
ORF1ab/nsp2325S325FtCctTc3131AY.40.000048
ORF1ab/nsp2325S325StcCtcT2828AY.30.000278
ORF1ab/nsp2325S325FtCctTc2828AY.390.000692
ORF1ab/nsp2325S325PTccCcc2323AY.440.00014
ORF1ab/nsp2325S325StcCtcT2122AY.260.000595
ORF1ab/nsp2325S325StcCtcA122AY.260.000028
ORF1ab/nsp2325S325FtCctTc2222AY.440.000134
ORF1ab/nsp2325S325StcCtcT2222B.1.1.4241
ORF1ab/nsp2325S325ATccGcc2121All0.000004
ORF1ab/nsp2325S325FtCctTc2020AY.840.008749
ORF1ab/nsp2325S325FtCctTc2020B.1.5960.001743
ORF1ab/nsp2325S325StcCtcT1718P.10.000268
ORF1ab/nsp2325S325StcCtcA118P.10.000016
ORF1ab/nsp2325S325FtCctTc1717B.1.20.00015
ORF1ab/nsp2325S325delTCC---1616B.1.1.70.000014
ORF1ab/nsp2325S325StcCtcT1616B.1.1770.000211
ORF1ab/nsp2325S325FtCctTc1515AY.420.000603
ORF1ab/nsp2325S325StcCtcT1415B.1.10.000254
ORF1ab/nsp2325S325StcCtcA115B.1.10.000018
ORF1ab/nsp2325S325StcCtcT1314AY.430.000058
ORF1ab/nsp2325S325StcCtcA114AY.430.000004
ORF1ab/nsp2325S325StcCtcT1414D.20.001051
ORF1ab/nsp2325S325StcCtcT1013B.10.000092
ORF1ab/nsp2325S325StcCtcA313B.10.000027
ORF1ab/nsp2325S325StcCtcT1212B.1.4290.000282
ORF1ab/nsp2325S325FtCctTc1111AY.250.000066
ORF1ab/nsp2325S325StcCtcT1010AY.250.00006
ORF1ab/nsp2325S325StcCtcT99AY.200.00035
ORF1ab/nsp2325S325FtCctTc99AY.30.00009
ORF1ab/nsp2325S325StcCtcA79P.20.001306
ORF1ab/nsp2325S325StcCtcT29P.20.000373
ORF1ab/nsp2325S325StcCtcT48AY.1030.000025
ORF1ab/nsp2325S325StcCtcA48AY.1030.000025
ORF1ab/nsp2325S325FtCctTc88AY.200.000311
ORF1ab/nsp2325S325StcCtcT88AY.390.000198
ORF1ab/nsp2325S325StcCtcT88B.1.1600.00025
ORF1ab/nsp2325S325FtCctTc88B.1.1770.000105
ORF1ab/nsp2325S325StcCtcT58B.1.3510.000149
ORF1ab/nsp2325S325StcCtcA38B.1.3510.000089
ORF1ab/nsp2325S325CtCctGc77All0.000001
ORF1ab/nsp2325S325FtCctTc77AY.1190.000247
ORF1ab/nsp2325S325StcCtcA77AY.4.2.10.001043
ORF1ab/nsp2325S325FtCctTc77AY.430.000031
ORF1ab/nsp2325S325YtCctAc67AY.430.000027
ORF1ab/nsp2325S325YtCCtAT17AY.430.000004
ORF1ab/nsp2325S325FtCctTc77AY.750.000392
ORF1ab/nsp2325S325FtCctTc77B.1.1.2320.012704
ORF1ab/nsp2325S325StcCtcT77B.1.1.5190.000278
ORF1ab/nsp2325S325ATccGcc77B.1.1.70.000006
ORF1ab/nsp2325S325TTccAcc46All0.000001
ORF1ab/nsp2325S325TTcCAcG26All0
ORF1ab/nsp2325S325FtCctTc66AY.1020.000159
ORF1ab/nsp2325S325FtCctTc66AY.260.00017
ORF1ab/nsp2325S325FtCctTc66AY.70.001176
ORF1ab/nsp2325S325StcCtcT66AY.840.002625
ORF1ab/nsp2325S325YtCctAc66B.1.1.70.000005
ORF1ab/nsp2325S325PTccCcc66B.1.20.000053
ORF1ab/nsp2325S325FtCctTc66B.1.258.110.002378
ORF1ab/nsp2325S325YtCctAc350.166667
ORF1ab/nsp2325S325YtCCtAT250.111111
ORF1ab/nsp2325S325StcCtcT45AY.290.000063
ORF1ab/nsp2325S325StcCtcA15AY.290.000016
ORF1ab/nsp2325S325PTccCcc45AY.430.000018
ORF1ab/nsp2325S325PTcCCcT15AY.430.000004
ORF1ab/nsp2325S325FtCctTc55AY.450.000608
ORF1ab/nsp2325S325FtCctTc55B.1.1.5250.027322
ORF1ab/nsp2325S325PTccCcc55B.1.110.20.833333
ORF1ab/nsp2325S325PTccCcc55B.1.160.260.012107
ORF1ab/nsp2325S325PTccCcc55B.1.177.890.121951
ORF1ab/nsp2325S325FtCctTc55B.1.4290.000118
ORF1ab/nsp2325S325YtCctAc55B.1.617.20.000019
ORF1ab/nsp2325S325FtCctTc55P.10.000079
ORF1ab/nsp2325S325StcCtcT55P.1.10.001588
ORF1ab/nsp2325S325DTCcGAc240.111111
ORF1ab/nsp2325S325DTCCGAT240.111111
ORF1ab/nsp2325S325FtCctTc44A0.001548
ORF1ab/nsp2325S325DTCCGAT24All0
ORF1ab/nsp2325S325LTCcCTc24All0
ORF1ab/nsp2325S325DTCcGAc24All0
ORF1ab/nsp2325S325LTCCCTT24All0
ORF1ab/nsp2325S325StcCtcT44AY.1020.000106
ORF1ab/nsp2325S325FtCctTc44AY.1180.000251
ORF1ab/nsp2325S325FtCctTc44AY.290.000063
ORF1ab/nsp2325S325YtCctAc44AY.9.20.000147
ORF1ab/nsp2325S325ATccGcc44B.10.000037
ORF1ab/nsp2325S325delTCC---44B.1.1.330.001684
ORF1ab/nsp2325S325PTccCcc44B.1.1770.000053
ORF1ab/nsp2325S325delTCC---44B.1.1770.000053
ORF1ab/nsp2325S325StcCtcT34B.1.20.000026
ORF1ab/nsp2325S325StcCtcG14B.1.20.000009
ORF1ab/nsp2325S325FtCctTc44B.1.4970.001259
ORF1ab/nsp2325S325StcCtcT44B.280.013115
ORF1ab/nsp2325S325TTcCAcG230.111111
ORF1ab/nsp2325S325TTccAcc130.055556
ORF1ab/nsp2325S325del1Tcc-cc23All0
ORF1ab/nsp2325S325del1tCct-c13All0
ORF1ab/nsp2325S325StcCtcT33AY.1180.000188
ORF1ab/nsp2325S325PTccCcc33AY.230.000209
ORF1ab/nsp2325S325PTccCcc33AY.30.00003
ORF1ab/nsp2325S325StcCtcT23AY.3.10.000171
ORF1ab/nsp2325S325StcCtcA13AY.3.10.000085
ORF1ab/nsp2325S325TTccAcc33AY.40.000005
ORF1ab/nsp2325S325YtCctAc33AY.4.20.000065
ORF1ab/nsp2325S325StcCtcT33AY.450.000365
ORF1ab/nsp2325S325StcCtcA33AY.46.40.000494
ORF1ab/nsp2325S325StcCtcT33AY.46.60.000217
ORF1ab/nsp2325S325FtCctTc33AY.540.000286
ORF1ab/nsp2325S325FtCctTc33AY.60.000123
ORF1ab/nsp2325S325FtCctTc33AY.9.10.000251
ORF1ab/nsp2325S325StcCtcT23AY.9.20.000073
ORF1ab/nsp2325S325StcCtcG13AY.9.20.000037
ORF1ab/nsp2325S325FtCctTc33AY.98.10.000145
ORF1ab/nsp2325S325delTCC---33B.1.1.3480.002389
ORF1ab/nsp2325S325PTccCcc33B.1.177.210.000229
ORF1ab/nsp2325S325StcCtcA33B.1.177.620.003576
ORF1ab/nsp2325S325StcCtcA33B.1.177.830.004444
ORF1ab/nsp2325S325FtCctTc33B.1.2430.000209
ORF1ab/nsp2325S325PTccCcc33B.1.3510.000089
ORF1ab/nsp2325S325FtCctTc33B.1.3510.000089
ORF1ab/nsp2325S325FtCctTc33B.1.360.000438
ORF1ab/nsp2325S325StcCtcT23P.1.170.000324
ORF1ab/nsp2325S325StcCtcA13P.1.170.000162
ORF1ab/nsp2325S325StcCtcT33P.1.20.003468
ORF1ab/nsp2325S325FtCctTc33Q.30.000435
ORF1ab/nsp2325S325StcCtcA23Q.80.00033
ORF1ab/nsp2325S325StcCtcT13Q.80.000165
ORF1ab/nsp2325S325FtCctTc220.111111
ORF1ab/nsp2325S325StcCtcA220.111111
ORF1ab/nsp2325S325PTcCCcG220.111111
ORF1ab/nsp2325S325StcCtcT22AF.10.074074
ORF1ab/nsp2325S325del2TCc--c12All0
ORF1ab/nsp2325S325del2tCCt--12All0
ORF1ab/nsp2325S325HTCcCAc12All0
ORF1ab/nsp2325S325HTCCCAT12All0
ORF1ab/nsp2325S325FtCctTc22AP.10.003003
ORF1ab/nsp2325S325StcCtcT22AY.1130.000285
ORF1ab/nsp2325S325FtCctTc22AY.1170.000169
ORF1ab/nsp2325S325FtCctTc22AY.1200.000074
ORF1ab/nsp2325S325PTccCcc22AY.1200.000074
ORF1ab/nsp2325S325StcCtcA12AY.1200.000037
ORF1ab/nsp2325S325StcCtcT12AY.1200.000037
ORF1ab/nsp2325S325StcCtcT22AY.1210.000271
ORF1ab/nsp2325S325StcCtcT12AY.140.000088
ORF1ab/nsp2325S325StcCtcA12AY.140.000088
ORF1ab/nsp2325S325StcCtcT22AY.16.10.00094
ORF1ab/nsp2325S325StcCtcT22AY.230.000139
ORF1ab/nsp2325S325StcCtcT22AY.270.000129
ORF1ab/nsp2325S325PTccCcc22AY.34.10.00102
ORF1ab/nsp2325S325StcCtcT12AY.360.000148
ORF1ab/nsp2325S325StcCtcA12AY.360.000148
ORF1ab/nsp2325S325delTCC---22AY.40.000003
ORF1ab/nsp2325S325FtCctTc22AY.4.40.000818
ORF1ab/nsp2325S325StcCtcT22AY.420.00008
ORF1ab/nsp2325S325HTCcCAc12AY.430.000004
ORF1ab/nsp2325S325HTCCCAT12AY.430.000004
ORF1ab/nsp2325S325StcCtcT12AY.50.000021
ORF1ab/nsp2325S325StcCtcG12AY.50.000021
ORF1ab/nsp2325S325StcCtcT12AY.530.000288
ORF1ab/nsp2325S325StcCtcG12AY.530.000288
ORF1ab/nsp2325S325StcCtcT22AY.690.000373
ORF1ab/nsp2325S325YtCctAc22AY.70.000392
ORF1ab/nsp2325S325ATccGcc22AY.750.000112
ORF1ab/nsp2325S325StcCtcT22AY.980.000158
ORF1ab/nsp2325S325StcCtcA22AY.99.20.000184
ORF1ab/nsp2325S325FtCctTc22B0.000256
ORF1ab/nsp2325S325PTccCcc22B.1.10.000036
ORF1ab/nsp2325S325StcCtcA22B.1.1.2140.000111
ORF1ab/nsp2325S325StcCtcT22B.1.1.2200.003717
ORF1ab/nsp2325S325StcCtcT22B.1.1.280.000622
ORF1ab/nsp2325S325StcCtcT22B.1.1.3540.008772
ORF1ab/nsp2325S325StcCtcT22B.1.1.3720.001377
ORF1ab/nsp2325S325FtCctTc22B.1.1.5190.000079
ORF1ab/nsp2325S325ATccGcc22B.1.177.170.001642
ORF1ab/nsp2325S325LTCcCTc12B.1.20.000009
ORF1ab/nsp2325S325LTCCCTT12B.1.20.000009
ORF1ab/nsp2325S325StcCtcT22B.1.2400.000431
ORF1ab/nsp2325S325PTccCcc22B.1.2580.000133
ORF1ab/nsp2325S325StcCtcT22B.1.3110.000549
ORF1ab/nsp2325S325StcCtcT22B.1.5260.000047
ORF1ab/nsp2325S325StcCtcT22B.1.617.10.000258
ORF1ab/nsp2325S325FtCctTc22B.1.6230.001073
ORF1ab/nsp2325S325StcCtcT22B.6.60.001778
ORF1ab/nsp2325S325delTCC---22N.60.014184
ORF1ab/nsp2325S325StcCtcT22P.1.70.000639
ORF1ab/nsp2325S325delTCC---22P.20.000373
ORF1ab/nsp2325S325ITCcATc110.055556
ORF1ab/nsp2325S325NTCcAAc110.055556
ORF1ab/nsp2325S325StcCtcT11A0.000387
ORF1ab/nsp2325S325StcCtcT11AD.20.000219
ORF1ab/nsp2325S325ITCcATc11All0
ORF1ab/nsp2325S325NTCcAAc11All0
ORF1ab/nsp2325S325PTccCcc11AY.1000.000046
ORF1ab/nsp2325S325StcCtcT11AY.1010.00049
ORF1ab/nsp2325S325FtCctTc11AY.1070.000466
ORF1ab/nsp2325S325PTccCcc11AY.1090.00074
ORF1ab/nsp2325S325StcCtcA11AY.110.001339
ORF1ab/nsp2325S325PTccCcc11AY.1100.000113
ORF1ab/nsp2325S325delTCC---11AY.1110.000183
ORF1ab/nsp2325S325delTCC---11AY.1130.000142
ORF1ab/nsp2325S325FtCctTc11AY.1130.000142
ORF1ab/nsp2325S325FtCctTc11AY.116.10.000311
ORF1ab/nsp2325S325PTccCcc11AY.1170.000085
ORF1ab/nsp2325S325StcCtcA11AY.1190.000035
ORF1ab/nsp2325S325PTccCcc11AY.1190.000035
ORF1ab/nsp2325S325del1Tcc-cc11AY.1190.000035
ORF1ab/nsp2325S325FtCctTc11AY.120.10.000321
ORF1ab/nsp2325S325FtCctTc11AY.1210.000135
ORF1ab/nsp2325S325PTccCcc11AY.1210.000135
ORF1ab/nsp2325S325StcCtcA11AY.160.00038
ORF1ab/nsp2325S325StcCtcT11AY.240.000431
ORF1ab/nsp2325S325PTccCcc11AY.240.000431
ORF1ab/nsp2325S325PTccCcc11AY.250.000006
ORF1ab/nsp2325S325delTCC---11AY.250.000006
ORF1ab/nsp2325S325PTccCcc11AY.260.000028
ORF1ab/nsp2325S325YtCctAc11AY.290.000016
ORF1ab/nsp2325S325delTCC---11AY.290.000016
ORF1ab/nsp2325S325ATccGcc11AY.320.000532
ORF1ab/nsp2325S325PTccCcc11AY.330.000067
ORF1ab/nsp2325S325FtCctTc11AY.330.000067
ORF1ab/nsp2325S325PTccCcc11AY.340.000097
ORF1ab/nsp2325S325StcCtcT11AY.380.000499
ORF1ab/nsp2325S325PTccCcc11AY.390.000025
ORF1ab/nsp2325S325FtCctTc11AY.39.10.00004
ORF1ab/nsp2325S325PTccCcc11AY.39.20.001541
ORF1ab/nsp2325S325YtCctAc11AY.40.000002
ORF1ab/nsp2325S325ATccGcc11AY.40.000002
ORF1ab/nsp2325S325StcCtcT11AY.4.20.000022
ORF1ab/nsp2325S325FtCctTc11AY.4.2.10.000149
ORF1ab/nsp2325S325delTCC---11AY.4.50.000107
ORF1ab/nsp2325S325delTCC---11AY.430.000004
ORF1ab/nsp2325S325delTCC---11AY.440.000006
ORF1ab/nsp2325S325del1tCct-c11AY.440.000006
ORF1ab/nsp2325S325FtCctTc11AY.460.000104
ORF1ab/nsp2325S325delTCC---11AY.46.60.000072
ORF1ab/nsp2325S325YtCctAc11AY.470.000031
ORF1ab/nsp2325S325FtCctTc11AY.470.000031
ORF1ab/nsp2325S325StcCtcT11AY.470.000031
ORF1ab/nsp2325S325PTccCcc11AY.470.000031
ORF1ab/nsp2325S325PTccCcc11AY.50.000021
ORF1ab/nsp2325S325FtCctTc11AY.510.000909
ORF1ab/nsp2325S325FtCctTc11AY.610.000105
ORF1ab/nsp2325S325StcCtcA11AY.610.000105
ORF1ab/nsp2325S325ATccGcc11AY.610.000105
ORF1ab/nsp2325S325YtCctAc11AY.610.000105
ORF1ab/nsp2325S325del2TCc--c11AY.670.000464
ORF1ab/nsp2325S325FtCctTc11AY.690.000187
ORF1ab/nsp2325S325StcCtcT11AY.750.000056
ORF1ab/nsp2325S325StcCtcT11AY.75.10.00018
ORF1ab/nsp2325S325FtCctTc11AY.75.10.00018
ORF1ab/nsp2325S325StcCtcT11AY.790.001211
ORF1ab/nsp2325S325YtCctAc11AY.860.00083
ORF1ab/nsp2325S325FtCctTc11AY.90.000068
ORF1ab/nsp2325S325StcCtcT11AY.90.000068
ORF1ab/nsp2325S325StcCtcT11AY.9.10.000084
ORF1ab/nsp2325S325PTccCcc11AY.980.000079
ORF1ab/nsp2325S325FtCctTc11AY.980.000079
ORF1ab/nsp2325S325PTccCcc11AY.98.10.000048
ORF1ab/nsp2325S325delTCC---11AY.990.001049
ORF1ab/nsp2325S325StcCtcA11AY.99.10.001553
ORF1ab/nsp2325S325PTccCcc11B0.000128
ORF1ab/nsp2325S325StcCtcT11B0.000128
ORF1ab/nsp2325S325YtCctAc11B.10.000009
ORF1ab/nsp2325S325PTccCcc11B.10.000009
ORF1ab/nsp2325S325LTCCCTT11B.10.000009
ORF1ab/nsp2325S325CtCctGc11B.1.10.000018
ORF1ab/nsp2325S325StcCtcT11B.1.1.10.000327
ORF1ab/nsp2325S325StcCtcT11B.1.1.1090.04
ORF1ab/nsp2325S325delTCC---11B.1.1.1590.004673
ORF1ab/nsp2325S325StcCtcT11B.1.1.1700.001247
ORF1ab/nsp2325S325PTccCcc11B.1.1.1740.003378
ORF1ab/nsp2325S325FtCctTc11B.1.1.2190.005
ORF1ab/nsp2325S325StcCtcT11B.1.1.250.000569
ORF1ab/nsp2325S325StcCtcT11B.1.1.2580.003257
ORF1ab/nsp2325S325delTCC---11B.1.1.2840.000107
ORF1ab/nsp2325S325PTccCcc11B.1.1.3060.000438
ORF1ab/nsp2325S325StcCtcT11B.1.1.3180.000302
ORF1ab/nsp2325S325FtCctTc11B.1.1.330.000421
ORF1ab/nsp2325S325StcCtcT11B.1.1.3680.003086
ORF1ab/nsp2325S325StcCtcT11B.1.1.4090.002833
ORF1ab/nsp2325S325PTccCcc11B.1.1.4230.0625
ORF1ab/nsp2325S325FtCctTc11B.1.1.5260.003546
ORF1ab/nsp2325S325del2tCCt--11B.1.1.70.000001
ORF1ab/nsp2325S325FtCctTc11B.1.1.700.000341
ORF1ab/nsp2325S325PTccCcc11B.1.1600.000031
ORF1ab/nsp2325S325ATccGcc11B.1.1600.000031
ORF1ab/nsp2325S325YtCctAc11B.1.1600.000031
ORF1ab/nsp2325S325delTCC---11B.1.1600.000031
ORF1ab/nsp2325S325YtCctAc11B.1.1770.000013
ORF1ab/nsp2325S325CtCctGc11B.1.1770.000013
ORF1ab/nsp2325S325delTCC---11B.1.177.160.000664
ORF1ab/nsp2325S325PTccCcc11B.1.177.160.000664
ORF1ab/nsp2325S325YtCctAc11B.1.177.430.001477
ORF1ab/nsp2325S325YtCctAc11B.1.177.440.000519
ORF1ab/nsp2325S325delTCC---11B.1.177.570.000281
ORF1ab/nsp2325S325FtCctTc11B.1.177.60.000977
ORF1ab/nsp2325S325StcCtcT11B.1.177.690.001484
ORF1ab/nsp2325S325PTccCcc11B.1.1990.004132
ORF1ab/nsp2325S325YtCctAc11B.1.20.000009
ORF1ab/nsp2325S325CtCctGc11B.1.20.000009
ORF1ab/nsp2325S325StcCtcT11B.1.2210.000071
ORF1ab/nsp2325S325StcCtcA11B.1.2360.002053
ORF1ab/nsp2325S325FtCctTc11B.1.2580.000067
ORF1ab/nsp2325S325StcCtcT11B.1.2580.000067
ORF1ab/nsp2325S325FtCctTc11B.1.258.170.000104
ORF1ab/nsp2325S325CtCctGc11B.1.2600.003344
ORF1ab/nsp2325S325FtCctTc11B.1.3110.000275
ORF1ab/nsp2325S325FtCctTc11B.1.3490.000715
ORF1ab/nsp2325S325ATccGcc11B.1.3620.001541
ORF1ab/nsp2325S325StcCtcT11B.1.3670.000792
ORF1ab/nsp2325S325StcCtcT11B.1.3690.000285
ORF1ab/nsp2325S325FtCctTc11B.1.3690.000285
ORF1ab/nsp2325S325PTccCcc11B.1.3890.001002
ORF1ab/nsp2325S325StcCtcT11B.1.4280.00102
ORF1ab/nsp2325S325YtCctAc11B.1.4290.000024
ORF1ab/nsp2325S325CtCctGc11B.1.4290.000024
ORF1ab/nsp2325S325FtCctTc11B.1.438.10.000107
ORF1ab/nsp2325S325StcCtcA11B.1.438.10.000107
ORF1ab/nsp2325S325StcCtcT11B.1.4430.004673
ORF1ab/nsp2325S325CtCctGc11B.1.4430.004673
ORF1ab/nsp2325S325FtCctTc11B.1.466.20.000391
ORF1ab/nsp2325S325del1Tcc-cc11B.1.4790.038462
ORF1ab/nsp2325S325PTccCcc11B.1.4990.00105
ORF1ab/nsp2325S325StcCtcT11B.1.5200.021739
ORF1ab/nsp2325S325StcCtcT11B.1.5250.000113
ORF1ab/nsp2325S325PTccCcc11B.1.5250.000113
ORF1ab/nsp2325S325delTCC---11B.1.5250.000113
ORF1ab/nsp2325S325PTccCcc11B.1.5260.000024
ORF1ab/nsp2325S325YtCctAc11B.1.5260.000024
ORF1ab/nsp2325S325FtCctTc11B.1.5260.000024
ORF1ab/nsp2325S325FtCctTc11B.1.5410.004425
ORF1ab/nsp2325S325YtCctAc11B.1.5510.00129
ORF1ab/nsp2325S325StcCtcT11B.1.5640.000426
ORF1ab/nsp2325S325FtCctTc11B.1.5640.000426
ORF1ab/nsp2325S325FtCctTc11B.1.5750.000303
ORF1ab/nsp2325S325FtCctTc11B.1.575.10.002439
ORF1ab/nsp2325S325LTCcCTc11B.1.617.20.000004
ORF1ab/nsp2325S325PTccCcc11B.1.6210.000089
ORF1ab/nsp2325S325StcCtcT11B.1.6210.000089
ORF1ab/nsp2325S325StcCtcT11B.1.621.10.000506
ORF1ab/nsp2325S325PTccCcc11B.30.000831
ORF1ab/nsp2325S325delTCC---11B.340.013699
ORF1ab/nsp2325S325CtCctGc11B.60.00091
ORF1ab/nsp2325S325FtCctTc11C.180.002591
ORF1ab/nsp2325S325FtCctTc11C.300.001727
ORF1ab/nsp2325S325FtCctTc11C.360.000911
ORF1ab/nsp2325S325FtCctTc11C.36.3.10.002717
ORF1ab/nsp2325S325PTccCcc11C.370.000116
ORF1ab/nsp2325S325FtCctTc11D.20.000075
ORF1ab/nsp2325S325PTccCcc11D.20.000075
ORF1ab/nsp2325S325ATccGcc11P.10.000016
ORF1ab/nsp2325S325PTccCcc11P.10.000016
ORF1ab/nsp2325S325PTccCcc11P.1.120.000484
ORF1ab/nsp2325S325StcCtcT11P.1.140.000048
ORF1ab/nsp2325S325FtCctTc11P.1.140.000048
ORF1ab/nsp2325S325FtCctTc11P.1.150.000232
ORF1ab/nsp2325S325StcCtcT11P.1.150.000232
ORF1ab/nsp2325S325StcCtcT11P.1.40.000977

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.