CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 316 | Y316C | Y496C | nonsyn | tAt | tGt | 2110 | 2108 | 0.999052 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316C | Y496C | nonsyn | tAT | tGC | 2110 | 2 | 0.000947867 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316Y | Y496Y | syn | taT | taC | 640 | 640 | 1 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316F | Y496F | nonsyn | tAt | tTt | 96 | 96 | 1 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316H | Y496H | nonsyn | Tat | Cat | 67 | 66 | 0.985075 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316H | Y496H | nonsyn | TaT | CaC | 67 | 1 | 0.0149254 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316del | Y496del | del | TAT | --- | 57 | 57 | 1 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316S | Y496S | nonsyn | tAt | tCt | 15 | 7 | 0.466667 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316S | Y496S | nonsyn | TAT | AGC | 15 | 2 | 0.133333 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316S | Y496S | nonsyn | TAt | AGt | 15 | 2 | 0.133333 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316S | Y496S | nonsyn | tAT | tCA | 15 | 2 | 0.133333 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316S | Y496S | nonsyn | tAT | tCC | 15 | 2 | 0.133333 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316X | Y496X | nonsyn | taT | taA | 13 | 9 | 0.692308 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316X | Y496X | nonsyn | tAT | tGA | 13 | 2 | 0.153846 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316X | Y496X | nonsyn | taT | taG | 13 | 2 | 0.153846 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316N | Y496N | nonsyn | Tat | Aat | 10 | 8 | 0.8 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316D | Y496D | nonsyn | Tat | Gat | 10 | 8 | 0.8 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316D | Y496D | nonsyn | TaT | GaC | 10 | 2 | 0.2 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316N | Y496N | nonsyn | TaT | AaC | 10 | 2 | 0.2 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316G | Y496G | nonsyn | TAT | GGC | 6 | 2 | 0.333333 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316G | Y496G | nonsyn | TAt | GGt | 6 | 2 | 0.333333 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316A | Y496A | nonsyn | TAT | GCA | 6 | 2 | 0.333333 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316G | Y496G | nonsyn | TAT | GGA | 6 | 2 | 0.333333 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316A | Y496A | nonsyn | TAt | GCt | 6 | 2 | 0.333333 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316A | Y496A | nonsyn | TAT | GCC | 6 | 2 | 0.333333 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316T | Y496T | nonsyn | TAT | ACA | 6 | 2 | 0.333333 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316T | Y496T | nonsyn | TAt | ACt | 6 | 2 | 0.333333 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316T | Y496T | nonsyn | TAT | ACC | 6 | 2 | 0.333333 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316del1 | Y496del1 | del | taT | ta- | 5 | 3 | 0.6 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316del1 | Y496del1 | del | Tat | -at | 5 | 1 | 0.2 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316del1 | Y496del1 | del | TaT | -aC | 5 | 1 | 0.2 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316del2 | Y496del2 | del | TAt | --t | 4 | 2 | 0.5 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316del2 | Y496del2 | del | tAT | t-- | 4 | 1 | 0.25 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316del2 | Y496del2 | del | TAT | --A | 4 | 1 | 0.25 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316K | Y496K | nonsyn | TaT | AaA | 2 | 2 | 1 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316L | Y496L | nonsyn | tAT | tTG | 2 | 2 | 1 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316E | Y496E | nonsyn | TaT | GaA | 2 | 2 | 1 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316R | Y496R | nonsyn | TAT | AGA | 2 | 2 | 1 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316I | Y496I | nonsyn | TAt | ATt | 1 | 1 | 1 | 1751-1753 |
ORF1ab/nsp2 | 316 | Y316V | Y496V | nonsyn | TAt | GTt | 1 | 1 | 1 | 1751-1753 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 2108 | 2110 | All | 0.000403 |
ORF1ab/nsp2 | 316 | Y316C | tAT | tGC | 2 | 2110 | All | 0 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1630 | 1630 | Q.2 | 1 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 640 | 640 | All | 0.000122 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 176 | 176 | P.3 | 0.280702 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 163 | 163 | B.1.1.7 | 0.000146 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 101 | 101 | AY.120 | 0.003755 |
ORF1ab/nsp2 | 316 | Y316F | tAt | tTt | 96 | 96 | All | 0.000018 |
ORF1ab/nsp2 | 316 | Y316F | tAt | tTt | 86 | 86 | B.1.438.1 | 0.009224 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 80 | 80 | B.1.1.7 | 0.000072 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 72 | 72 | AY.3 | 0.000716 |
ORF1ab/nsp2 | 316 | Y316H | Tat | Cat | 66 | 67 | All | 0.000013 |
ORF1ab/nsp2 | 316 | Y316H | TaT | CaC | 1 | 67 | All | 0 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 57 | 57 | All | 0.000011 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 51 | 51 | AY.4 | 0.000079 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 35 | 35 | B.1.1.519 | 0.00139 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 29 | 29 | B.1.1.519 | 0.001152 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 21 | 21 | AY.103 | 0.00013 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 20 | 20 | B.1.2 | 0.000176 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 18 | 18 | AY.103 | 0.000112 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 18 | 18 | AY.44 | 0.00011 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 18 | 18 | B.1.617.2 | 0.000068 |
ORF1ab/nsp2 | 316 | Y316H | Tat | Cat | 16 | 16 | AY.4 | 0.000025 |
ORF1ab/nsp2 | 316 | Y316S | tAt | tCt | 7 | 15 | All | 0.000001 |
ORF1ab/nsp2 | 316 | Y316S | tAT | tCC | 2 | 15 | All | 0 |
ORF1ab/nsp2 | 316 | Y316S | tAT | tCA | 2 | 15 | All | 0 |
ORF1ab/nsp2 | 316 | Y316S | TAt | AGt | 2 | 15 | All | 0 |
ORF1ab/nsp2 | 316 | Y316S | TAT | AGC | 2 | 15 | All | 0 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 15 | 15 | AY.4 | 0.000023 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 15 | 15 | B.1.1.7 | 0.000013 |
ORF1ab/nsp2 | 316 | Y316H | Tat | Cat | 14 | 14 | B.1.617.2 | 0.000053 |
ORF1ab/nsp2 | 316 | Y316X | taT | taA | 9 | 13 | All | 0.000002 |
ORF1ab/nsp2 | 316 | Y316X | taT | taG | 2 | 13 | All | 0 |
ORF1ab/nsp2 | 316 | Y316X | tAT | tGA | 2 | 13 | All | 0 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 12 | 12 | AY.43 | 0.000053 |
ORF1ab/nsp2 | 316 | Y316H | Tat | Cat | 11 | 12 | B.1.1.7 | 0.00001 |
ORF1ab/nsp2 | 316 | Y316H | TaT | CaC | 1 | 12 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 12 | 12 | P.1.17 | 0.001941 |
ORF1ab/nsp2 | 316 | Y316S | tAt | tCt | 3 | 11 | 0.166667 | |
ORF1ab/nsp2 | 316 | Y316S | tAT | tCC | 2 | 11 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316S | TAt | AGt | 2 | 11 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316S | TAT | AGC | 2 | 11 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316S | tAT | tCA | 2 | 11 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 11 | 11 | B.1.3 | 0.028796 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 11 | 11 | B.1.429 | 0.000259 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp2 | 316 | Y316D | Tat | Gat | 8 | 10 | All | 0.000002 |
ORF1ab/nsp2 | 316 | Y316N | Tat | Aat | 8 | 10 | All | 0.000002 |
ORF1ab/nsp2 | 316 | Y316N | TaT | AaC | 2 | 10 | All | 0 |
ORF1ab/nsp2 | 316 | Y316D | TaT | GaC | 2 | 10 | All | 0 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 9 | 9 | P.1 | 0.000142 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 8 | 8 | B.1.177.79 | 0.018735 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 7 | 7 | B.1.2 | 0.000062 |
ORF1ab/nsp2 | 316 | Y316T | TAt | ACt | 2 | 6 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316A | TAT | GCA | 2 | 6 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316X | taT | taA | 2 | 6 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316T | TAT | ACA | 2 | 6 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316T | TAT | ACC | 2 | 6 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316X | taT | taG | 2 | 6 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316X | tAT | tGA | 2 | 6 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316G | TAt | GGt | 2 | 6 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316G | TAT | GGC | 2 | 6 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316G | TAT | GGA | 2 | 6 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316A | TAt | GCt | 2 | 6 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316A | TAT | GCC | 2 | 6 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316G | TAt | GGt | 2 | 6 | All | 0 |
ORF1ab/nsp2 | 316 | Y316G | TAT | GGC | 2 | 6 | All | 0 |
ORF1ab/nsp2 | 316 | Y316G | TAT | GGA | 2 | 6 | All | 0 |
ORF1ab/nsp2 | 316 | Y316T | TAT | ACA | 2 | 6 | All | 0 |
ORF1ab/nsp2 | 316 | Y316A | TAt | GCt | 2 | 6 | All | 0 |
ORF1ab/nsp2 | 316 | Y316A | TAT | GCC | 2 | 6 | All | 0 |
ORF1ab/nsp2 | 316 | Y316A | TAT | GCA | 2 | 6 | All | 0 |
ORF1ab/nsp2 | 316 | Y316T | TAT | ACC | 2 | 6 | All | 0 |
ORF1ab/nsp2 | 316 | Y316T | TAt | ACt | 2 | 6 | All | 0 |
ORF1ab/nsp2 | 316 | Y316H | Tat | Cat | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 3 | 5 | 0.166667 | |
ORF1ab/nsp2 | 316 | Y316C | tAT | tGC | 2 | 5 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316del1 | taT | ta- | 3 | 5 | All | 0.000001 |
ORF1ab/nsp2 | 316 | Y316del1 | Tat | -at | 1 | 5 | All | 0 |
ORF1ab/nsp2 | 316 | Y316del1 | TaT | -aC | 1 | 5 | All | 0 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 5 | 5 | AY.102 | 0.000133 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp2 | 316 | Y316N | Tat | Aat | 5 | 5 | AY.46.4 | 0.000823 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 5 | 5 | AY.46.6 | 0.000361 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp2 | 316 | Y316D | Tat | Gat | 2 | 4 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316N | TaT | AaC | 2 | 4 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316D | TaT | GaC | 2 | 4 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316N | Tat | Aat | 2 | 4 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316del2 | TAt | --t | 2 | 4 | All | 0 |
ORF1ab/nsp2 | 316 | Y316del2 | tAT | t-- | 1 | 4 | All | 0 |
ORF1ab/nsp2 | 316 | Y316del2 | TAT | --A | 1 | 4 | All | 0 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 4 | 4 | AY.121 | 0.000541 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 4 | 4 | AY.20 | 0.000155 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 4 | 4 | AY.44 | 0.000024 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 4 | 4 | B.1.1 | 0.000073 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 4 | 4 | B.1.234 | 0.000528 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 4 | 4 | B.1.617.2 | 0.000015 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 4 | 4 | C.14 | 0.017316 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 3 | 3 | AY.26 | 0.000085 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 3 | 3 | AY.39.1 | 0.000119 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 316 | Y316D | Tat | Gat | 3 | 3 | AY.44 | 0.000018 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 3 | 3 | AY.5 | 0.000062 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 3 | 3 | AY.5.3 | 0.001012 |
ORF1ab/nsp2 | 316 | Y316H | Tat | Cat | 3 | 3 | AY.75 | 0.000168 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 3 | 3 | AY.77 | 0.003382 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 3 | 3 | B.1.1.279 | 0.003363 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 3 | 3 | Q.4 | 0.001364 |
ORF1ab/nsp2 | 316 | Y316F | tAt | tTt | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316L | tAT | tTG | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316K | TaT | AaA | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316R | TAT | AGA | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316E | TaT | GaA | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 316 | Y316R | TAT | AGA | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 316 | Y316K | TaT | AaA | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 316 | Y316E | TaT | GaA | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 316 | Y316L | tAT | tTG | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 2 | 2 | AY.109 | 0.001479 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 2 | 2 | AY.111 | 0.000366 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp2 | 316 | Y316F | tAt | tTt | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp2 | 316 | Y316H | Tat | Cat | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 2 | 2 | AY.55 | 0.001835 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 2 | 2 | AY.61 | 0.00021 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 316 | Y316del1 | taT | ta- | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 316 | Y316H | Tat | Cat | 2 | 2 | B.1.1 | 0.000036 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp2 | 316 | Y316F | tAt | tTt | 2 | 2 | B.1.1.7 | 0.000002 |
ORF1ab/nsp2 | 316 | Y316H | Tat | Cat | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 2 | 2 | B.1.221 | 0.000142 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp2 | 316 | Y316H | Tat | Cat | 2 | 2 | C.2 | 0.032258 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 316 | Y316V | TAt | GTt | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 316 | Y316I | TAt | ATt | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 316 | Y316S | tAt | tCt | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 316 | Y316del1 | Tat | -at | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | AY.119 | 0.000035 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 316 | Y316H | Tat | Cat | 1 | 1 | AY.39.1 | 0.00004 |
ORF1ab/nsp2 | 316 | Y316S | tAt | tCt | 1 | 1 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 316 | Y316del1 | TaT | -aC | 1 | 1 | AY.43 | 0.000004 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 316 | Y316V | TAt | GTt | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 316 | Y316H | Tat | Cat | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp2 | 316 | Y316X | taT | taA | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 316 | Y316H | Tat | Cat | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 316 | Y316N | Tat | Aat | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | AY.7.1 | 0.000113 |
ORF1ab/nsp2 | 316 | Y316H | Tat | Cat | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 316 | Y316H | Tat | Cat | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 316 | Y316X | taT | taA | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 1 | 1 | AY.99 | 0.001049 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 1 | 1 | AY.99.1 | 0.001553 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 316 | Y316F | tAt | tTt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 316 | Y316X | taT | taA | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 316 | Y316D | Tat | Gat | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 316 | Y316X | taT | taA | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 316 | Y316D | Tat | Gat | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | B.1.1.44 | 0.00241 |
ORF1ab/nsp2 | 316 | Y316X | taT | taA | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 316 | Y316I | TAt | ATt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 316 | Y316del2 | tAT | t-- | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 316 | Y316D | Tat | Gat | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 316 | Y316X | taT | taA | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 316 | Y316H | Tat | Cat | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 316 | Y316S | tAt | tCt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp2 | 316 | Y316F | tAt | tTt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 316 | Y316F | tAt | tTt | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp2 | 316 | Y316H | Tat | Cat | 1 | 1 | B.1.36.9 | 0.003215 |
ORF1ab/nsp2 | 316 | Y316X | taT | taA | 1 | 1 | B.1.377 | 0.004566 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp2 | 316 | Y316H | Tat | Cat | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 316 | Y316del | TAT | --- | 1 | 1 | B.1.525 | 0.000113 |
ORF1ab/nsp2 | 316 | Y316del2 | TAt | --t | 1 | 1 | B.1.546 | 0.003704 |
ORF1ab/nsp2 | 316 | Y316F | tAt | tTt | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 316 | Y316S | tAt | tCt | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | B.1.588 | 0.00091 |
ORF1ab/nsp2 | 316 | Y316del2 | TAt | --t | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 316 | Y316del1 | taT | ta- | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp2 | 316 | Y316del2 | TAT | --A | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 316 | Y316Y | taT | taC | 1 | 1 | B.1.628 | 0.000352 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | P.1.1 | 0.000318 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | Q.3 | 0.000145 |
ORF1ab/nsp2 | 316 | Y316C | tAt | tGt | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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