CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 313 & Codon = gTt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2313G313VG493VnonsyngGtgTt51480.9411761742-1744

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2313G313VgGtgTt4851All0.000009
ORF1ab/nsp2313G313VgGtgTt99B.1.1.70.000008
ORF1ab/nsp2313G313VgGtgTt77B.1.20.000062
ORF1ab/nsp2313G313VgGtgTt55B.1.617.20.000019
ORF1ab/nsp2313G313VgGtgTt13B.1.3510.00003
ORF1ab/nsp2313G313VgGtgTt22A.280.005291
ORF1ab/nsp2313G313VgGtgTt22B.1.10.000036
ORF1ab/nsp2313G313VgGtgTt22P.10.000032
ORF1ab/nsp2313G313VgGtgTt11AY.1030.000006
ORF1ab/nsp2313G313VgGtgTt11AY.1180.000063
ORF1ab/nsp2313G313VgGtgTt11AY.1190.000035
ORF1ab/nsp2313G313VgGtgTt11AY.230.00007
ORF1ab/nsp2313G313VgGtgTt11AY.30.00001
ORF1ab/nsp2313G313VgGtgTt11AY.40.000002
ORF1ab/nsp2313G313VgGtgTt11AY.420.00004
ORF1ab/nsp2313G313VgGtgTt11AY.450.000122
ORF1ab/nsp2313G313VgGtgTt11AY.460.000104
ORF1ab/nsp2313G313VgGtgTt11AY.470.000031
ORF1ab/nsp2313G313VgGtgTt11AY.950.000761
ORF1ab/nsp2313G313VgGtgTt11B.1.1.2890.002083
ORF1ab/nsp2313G313VgGtgTt11B.1.1.4340.000349
ORF1ab/nsp2313G313VgGtgTt11B.1.1.830.00271
ORF1ab/nsp2313G313VgGtgTt11B.1.1770.000013
ORF1ab/nsp2313G313VgGtgTt11B.1.3630.012987
ORF1ab/nsp2313G313VgGtgTt11B.1.4270.00005
ORF1ab/nsp2313G313VgGtgTt11B.1.5250.000113
ORF1ab/nsp2313G313VgGtgTt11B.4.50.011905
ORF1ab/nsp2313G313VgGtgTt11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.