CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 310

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2310T310IT490InonsynaCtaTt9849810.9969511733-1735
ORF1ab/nsp2310T310IT490InonsynaCTaTA98420.002032521733-1735
ORF1ab/nsp2310T310IT490InonsynaCTaTC98410.001016261733-1735
ORF1ab/nsp2310T310TT490TsynacTacC3072240.7296421733-1735
ORF1ab/nsp2310T310TT490TsynacTacA307510.1661241733-1735
ORF1ab/nsp2310T310TT490TsynacTacG307320.1042351733-1735
ORF1ab/nsp2310T310AT490AnonsynActGct59570.9661021733-1735
ORF1ab/nsp2310T310AT490AnonsynAcTGcA5920.03389831733-1735
ORF1ab/nsp2310T310delT490deldelACT---393911733-1735
ORF1ab/nsp2310T310NT490NnonsynaCtaAt202011733-1735
ORF1ab/nsp2310T310del1T490del1delacTac-14100.7142861733-1735
ORF1ab/nsp2310T310ST490SnonsynActTct1470.51733-1735
ORF1ab/nsp2310T310ST490SnonsynaCtaGt1450.3571431733-1735
ORF1ab/nsp2310T310del1T490del1delACTWY-1420.1428571733-1735
ORF1ab/nsp2310T310ST490SnonsynAcTTcA1420.1428571733-1735
ORF1ab/nsp2310T310del1T490del1delAct-ct1410.07142861733-1735
ORF1ab/nsp2310T310del1T490del1delAcT-cG1410.07142861733-1735
ORF1ab/nsp2310T310LT490LnonsynACTTTA320.6666671733-1735
ORF1ab/nsp2310T310LT490LnonsynACTCTG310.3333331733-1735
ORF1ab/nsp2310T310YT490YnonsynACtTAt2211733-1735
ORF1ab/nsp2310T310FT490FnonsynACtTTt2211733-1735
ORF1ab/nsp2310T310PT490PnonsynActCct210.51733-1735
ORF1ab/nsp2310T310PT490PnonsynAcTCcG210.51733-1735
ORF1ab/nsp2310T310del2T490del2delACTG--1111733-1735

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2310T310IaCtaTt981984All0.000188
ORF1ab/nsp2310T310IaCTaTA2984All0
ORF1ab/nsp2310T310IaCTaTC1984All0
ORF1ab/nsp2310T310IaCtaTt574574B.1.1.70.000514
ORF1ab/nsp2310T310TacTacC224307All0.000043
ORF1ab/nsp2310T310TacTacA51307All0.00001
ORF1ab/nsp2310T310TacTacG32307All0.000006
ORF1ab/nsp2310T310AActGct5759All0.000011
ORF1ab/nsp2310T310AAcTGcA259All0
ORF1ab/nsp2310T310TacTacC4652B.1.1.70.000041
ORF1ab/nsp2310T310TacTacA352B.1.1.70.000003
ORF1ab/nsp2310T310TacTacG352B.1.1.70.000003
ORF1ab/nsp2310T310IaCtaTt5151B.1.4871
ORF1ab/nsp2310T310delACT---3939All0.000007
ORF1ab/nsp2310T310IaCtaTt3535AY.740.004048
ORF1ab/nsp2310T310TacTacC3434AY.40.000053
ORF1ab/nsp2310T310IaCtaTt3232AY.40.00005
ORF1ab/nsp2310T310IaCtaTt3030AY.430.000133
ORF1ab/nsp2310T310IaCtaTt2929B.1.2430.002018
ORF1ab/nsp2310T310TacTacA2727AY.220.056485
ORF1ab/nsp2310T310TacTacC2122AY.430.000093
ORF1ab/nsp2310T310TacTacA122AY.430.000004
ORF1ab/nsp2310T310IaCtaTt2121AY.30.000209
ORF1ab/nsp2310T310NaCtaAt2020All0.000004
ORF1ab/nsp2310T310IaCtaTt1919P.1.140.000908
ORF1ab/nsp2310T310TacTacC1818B.1.10.000327
ORF1ab/nsp2310T310TacTacC1317P.10.000205
ORF1ab/nsp2310T310TacTacG417P.10.000063
ORF1ab/nsp2310T310IaCtaTt1616AY.1030.000099
ORF1ab/nsp2310T310IaCtaTt1616B.10.000147
ORF1ab/nsp2310T310TacTacC1515B.1.20.000132
ORF1ab/nsp2310T310TacTacG1515B.1.4290.000353
ORF1ab/nsp2310T310del1acTac-1014All0.000002
ORF1ab/nsp2310T310SActTct714All0.000001
ORF1ab/nsp2310T310SaCtaGt514All0.000001
ORF1ab/nsp2310T310SAcTTcA214All0
ORF1ab/nsp2310T310del1ACTWY-214All0
ORF1ab/nsp2310T310del1AcT-cG114All0
ORF1ab/nsp2310T310del1Act-ct114All0
ORF1ab/nsp2310T310IaCtaTt1414B.1.20.000123
ORF1ab/nsp2310T310IaCtaTt1213B.1.617.20.000045
ORF1ab/nsp2310T310IaCTaTC113B.1.617.20.000004
ORF1ab/nsp2310T310TacTacC811B.1.617.20.00003
ORF1ab/nsp2310T310TacTacA311B.1.617.20.000011
ORF1ab/nsp2310T310TacTacC810AY.440.000049
ORF1ab/nsp2310T310TacTacA110AY.440.000006
ORF1ab/nsp2310T310TacTacG110AY.440.000006
ORF1ab/nsp2310T310IaCtaTt1010AY.540.000953
ORF1ab/nsp2310T310TacTacC710B.10.000064
ORF1ab/nsp2310T310TacTacA210B.10.000018
ORF1ab/nsp2310T310TacTacG110B.10.000009
ORF1ab/nsp2310T310IaCtaTt1010B.1.2650.012706
ORF1ab/nsp2310T310delACT---99B.1.1.70.000008
ORF1ab/nsp2310T310TacTacC88B.1.2580.000532
ORF1ab/nsp2310T310IaCtaTt77AY.290.00011
ORF1ab/nsp2310T310AActGct77B.1.1.70.000006
ORF1ab/nsp2310T310SActTct460.222222
ORF1ab/nsp2310T310SAcTTcA260.111111
ORF1ab/nsp2310T310AActGct66AY.1020.000159
ORF1ab/nsp2310T310TacTacC56AY.1030.000031
ORF1ab/nsp2310T310TacTacG16AY.1030.000006
ORF1ab/nsp2310T310AActGct56B.10.000046
ORF1ab/nsp2310T310AAcTGcA16B.10.000009
ORF1ab/nsp2310T310IaCtaTt55AY.250.00003
ORF1ab/nsp2310T310TacTacC45AY.250.000024
ORF1ab/nsp2310T310TacTacA15AY.250.000006
ORF1ab/nsp2310T310NaCtaAt55AY.30.00005
ORF1ab/nsp2310T310AActGct55AY.430.000022
ORF1ab/nsp2310T310IaCtaTt55B.1.10.000091
ORF1ab/nsp2310T310IaCtaTt55B.1.1770.000066
ORF1ab/nsp2310T310IaCtaTt55B.1.4220.004062
ORF1ab/nsp2310T310IaCtaTt55P.10.000079
ORF1ab/nsp2310T310IaCtaTt240.111111
ORF1ab/nsp2310T310IaCTaTA240.111111
ORF1ab/nsp2310T310TacTacC44AY.420.000161
ORF1ab/nsp2310T310IaCtaTt44AY.440.000024
ORF1ab/nsp2310T310AActGct44AY.590.002119
ORF1ab/nsp2310T310IaCtaTt44AY.630.001547
ORF1ab/nsp2310T310delACT---44B.1.1.330.001684
ORF1ab/nsp2310T310delACT---44B.1.1770.000053
ORF1ab/nsp2310T310AActGct44B.1.20.000035
ORF1ab/nsp2310T310delACT---44B.1.617.20.000015
ORF1ab/nsp2310T310TacTacA230.111111
ORF1ab/nsp2310T310TacTacG130.055556
ORF1ab/nsp2310T310LACTTTA23All0
ORF1ab/nsp2310T310LACTCTG13All0
ORF1ab/nsp2310T310TacTacC33AY.1210.000406
ORF1ab/nsp2310T310TacTacA23AY.30.00002
ORF1ab/nsp2310T310TacTacC13AY.30.00001
ORF1ab/nsp2310T310AActGct33AY.40.000005
ORF1ab/nsp2310T310IaCtaTt33AY.420.000121
ORF1ab/nsp2310T310AActGct33AY.440.000018
ORF1ab/nsp2310T310IaCtaTt33AY.470.000093
ORF1ab/nsp2310T310IaCtaTt33AY.750.000168
ORF1ab/nsp2310T310delACT---33B.1.1.3480.002389
ORF1ab/nsp2310T310IaCtaTt33B.1.1.4200.003018
ORF1ab/nsp2310T310TacTacC33B.1.5650.002431
ORF1ab/nsp2310T310IaCtaTt33B.30.002492
ORF1ab/nsp2310T310TacTacC33P.20.00056
ORF1ab/nsp2310T310LACTTTA220.111111
ORF1ab/nsp2310T310del1ACTWY-220.111111
ORF1ab/nsp2310T310YACtTAt220.111111
ORF1ab/nsp2310T310NaCtaAt220.111111
ORF1ab/nsp2310T310FACtTTt220.111111
ORF1ab/nsp2310T310FACtTTt22All0
ORF1ab/nsp2310T310YACtTAt22All0
ORF1ab/nsp2310T310PActCct12All0
ORF1ab/nsp2310T310PAcTCcG12All0
ORF1ab/nsp2310T310TacTacC12AY.1110.000183
ORF1ab/nsp2310T310TacTacA12AY.1110.000183
ORF1ab/nsp2310T310NaCtaAt22AY.1190.000071
ORF1ab/nsp2310T310IaCtaTt22AY.260.000057
ORF1ab/nsp2310T310IaCtaTt22AY.270.000129
ORF1ab/nsp2310T310TacTacC22AY.360.000296
ORF1ab/nsp2310T310IaCtaTt22AY.370.000632
ORF1ab/nsp2310T310AActGct22AY.4.30.001684
ORF1ab/nsp2310T310del1acTac-22AY.430.000009
ORF1ab/nsp2310T310AActGct22AY.50.000041
ORF1ab/nsp2310T310AActGct22B.1.10.000036
ORF1ab/nsp2310T310IaCtaTt22B.1.1.250.001137
ORF1ab/nsp2310T310del1acTac-22B.1.1.70.000002
ORF1ab/nsp2310T310NaCtaAt22B.1.1.70.000002
ORF1ab/nsp2310T310SaCtaGt12B.1.1.70.000001
ORF1ab/nsp2310T310SActTct12B.1.1.70.000001
ORF1ab/nsp2310T310AActGct22B.1.1600.000062
ORF1ab/nsp2310T310TacTacC12B.1.1770.000013
ORF1ab/nsp2310T310TacTacA12B.1.1770.000013
ORF1ab/nsp2310T310SaCtaGt22B.1.177.440.001038
ORF1ab/nsp2310T310IaCtaTt22B.1.2210.000142
ORF1ab/nsp2310T310TacTacC22B.1.221.10.005814
ORF1ab/nsp2310T310IaCtaTt22B.1.5240.002813
ORF1ab/nsp2310T310AActGct22B.1.617.20.000008
ORF1ab/nsp2310T310delACT---22N.60.014184
ORF1ab/nsp2310T310delACT---22P.20.000373
ORF1ab/nsp2310T310IaCtaTt11A.10.000282
ORF1ab/nsp2310T310TacTacG11A.2.20.001689
ORF1ab/nsp2310T310TacTacA11AD.20.000219
ORF1ab/nsp2310T310IaCtaTt11AE.80.000489
ORF1ab/nsp2310T310del2ACTG--11All0
ORF1ab/nsp2310T310IaCtaTt11AU.20.002421
ORF1ab/nsp2310T310TacTacA11AU.30.00211
ORF1ab/nsp2310T310NaCtaAt11AY.1030.000006
ORF1ab/nsp2310T310TacTacC11AY.1070.000466
ORF1ab/nsp2310T310IaCtaTt11AY.1110.000183
ORF1ab/nsp2310T310delACT---11AY.1130.000142
ORF1ab/nsp2310T310IaCtaTt11AY.1160.000287
ORF1ab/nsp2310T310TacTacC11AY.1180.000063
ORF1ab/nsp2310T310IaCtaTt11AY.1180.000063
ORF1ab/nsp2310T310AActGct11AY.1180.000063
ORF1ab/nsp2310T310delACT---11AY.1190.000035
ORF1ab/nsp2310T310TacTacC11AY.1190.000035
ORF1ab/nsp2310T310IaCtaTt11AY.120.000316
ORF1ab/nsp2310T310TacTacA11AY.1200.000037
ORF1ab/nsp2310T310AActGct11AY.1200.000037
ORF1ab/nsp2310T310IaCtaTt11AY.120.10.000321
ORF1ab/nsp2310T310SActTct11AY.140.000088
ORF1ab/nsp2310T310TacTacC11AY.200.000039
ORF1ab/nsp2310T310IaCtaTt11AY.230.00007
ORF1ab/nsp2310T310TacTacG11AY.230.00007
ORF1ab/nsp2310T310NaCtaAt11AY.260.000028
ORF1ab/nsp2310T310TacTacA11AY.260.000028
ORF1ab/nsp2310T310NaCtaAt11AY.290.000016
ORF1ab/nsp2310T310delACT---11AY.290.000016
ORF1ab/nsp2310T310IaCtaTt11AY.29.10.000221
ORF1ab/nsp2310T310delACT---11AY.30.00001
ORF1ab/nsp2310T310IaCtaTt11AY.300.000396
ORF1ab/nsp2310T310TacTacC11AY.380.000499
ORF1ab/nsp2310T310NaCtaAt11AY.40.000002
ORF1ab/nsp2310T310del1acTac-11AY.40.000002
ORF1ab/nsp2310T310IaCtaTt11AY.4.2.10.000149
ORF1ab/nsp2310T310NaCtaAt11AY.4.2.10.000149
ORF1ab/nsp2310T310delACT---11AY.430.000004
ORF1ab/nsp2310T310NaCtaAt11AY.440.000006
ORF1ab/nsp2310T310LACTCTG11AY.440.000006
ORF1ab/nsp2310T310del2ACTG--11AY.440.000006
ORF1ab/nsp2310T310TacTacG11AY.46.40.000165
ORF1ab/nsp2310T310PAcTCcG11AY.470.000031
ORF1ab/nsp2310T310IaCtaTt11AY.50.000021
ORF1ab/nsp2310T310IaCtaTt11AY.5.30.000337
ORF1ab/nsp2310T310TacTacA11AY.530.000288
ORF1ab/nsp2310T310IaCtaTt11AY.590.00053
ORF1ab/nsp2310T310IaCtaTt11AY.60.000041
ORF1ab/nsp2310T310TacTacC11AY.610.000105
ORF1ab/nsp2310T310del1Act-ct11AY.670.000464
ORF1ab/nsp2310T310TacTacG11AY.690.000187
ORF1ab/nsp2310T310TacTacC11AY.790.001211
ORF1ab/nsp2310T310del1AcT-cG11AY.850.000427
ORF1ab/nsp2310T310IaCtaTt11AY.90.000068
ORF1ab/nsp2310T310TacTacC11AY.9.10.000084
ORF1ab/nsp2310T310delACT---11AY.9.20.000037
ORF1ab/nsp2310T310TacTacC11AY.9.20.000037
ORF1ab/nsp2310T310IaCtaTt11AY.970.001701
ORF1ab/nsp2310T310AActGct11AY.980.000079
ORF1ab/nsp2310T310delACT---11AY.990.001049
ORF1ab/nsp2310T310IaCtaTt11B0.000128
ORF1ab/nsp2310T310NaCtaAt11B.10.000009
ORF1ab/nsp2310T310SActTct11B.1.10.000018
ORF1ab/nsp2310T310TacTacC11B.1.1.1210.002427
ORF1ab/nsp2310T310del1acTac-11B.1.1.1590.004673
ORF1ab/nsp2310T310IaCtaTt11B.1.1.1610.003534
ORF1ab/nsp2310T310IaCtaTt11B.1.1.1860.003436
ORF1ab/nsp2310T310AActGct11B.1.1.2140.000055
ORF1ab/nsp2310T310delACT---11B.1.1.2840.000107
ORF1ab/nsp2310T310TacTacC11B.1.1.4290.004608
ORF1ab/nsp2310T310IaCtaTt11B.1.1.5190.00004
ORF1ab/nsp2310T310AActGct11B.1.1470.000756
ORF1ab/nsp2310T310del1acTac-11B.1.1600.000031
ORF1ab/nsp2310T310SaCtaGt11B.1.1770.000013
ORF1ab/nsp2310T310del1acTac-11B.1.1770.000013
ORF1ab/nsp2310T310AActGct11B.1.1770.000013
ORF1ab/nsp2310T310delACT---11B.1.177.160.000664
ORF1ab/nsp2310T310IaCtaTt11B.1.177.210.000076
ORF1ab/nsp2310T310TacTacG11B.1.177.510.004566
ORF1ab/nsp2310T310delACT---11B.1.177.570.000281
ORF1ab/nsp2310T310IaCtaTt11B.1.177.730.000566
ORF1ab/nsp2310T310del1acTac-11B.1.20.000009
ORF1ab/nsp2310T310SaCtaGt11B.1.20.000009
ORF1ab/nsp2310T310IaCtaTt11B.1.2060.000816
ORF1ab/nsp2310T310IaCtaTt11B.1.2340.000132
ORF1ab/nsp2310T310NaCtaAt11B.1.2580.000067
ORF1ab/nsp2310T310TacTacC11B.1.258.170.000104
ORF1ab/nsp2310T310IaCtaTt11B.1.3060.005714
ORF1ab/nsp2310T310AActGct11B.1.3110.000275
ORF1ab/nsp2310T310PActCct11B.1.3320.003497
ORF1ab/nsp2310T310TacTacA11B.1.3330.010526
ORF1ab/nsp2310T310IaCtaTt11B.1.3510.00003
ORF1ab/nsp2310T310IaCtaTt11B.1.3560.001727
ORF1ab/nsp2310T310IaCtaTt11B.1.360.000146
ORF1ab/nsp2310T310del1acTac-11B.1.36.170.000494
ORF1ab/nsp2310T310TacTacC11B.1.36.290.000517
ORF1ab/nsp2310T310NaCtaAt11B.1.4290.000024
ORF1ab/nsp2310T310TacTacA11B.1.4460.02
ORF1ab/nsp2310T310AAcTGcA11B.1.4460.02
ORF1ab/nsp2310T310IaCtaTt11B.1.4530.003236
ORF1ab/nsp2310T310TacTacG11B.1.4620.007246
ORF1ab/nsp2310T310IaCtaTt11B.1.466.20.000391
ORF1ab/nsp2310T310TacTacC11B.1.5250.000113
ORF1ab/nsp2310T310IaCtaTt11B.1.5250.000113
ORF1ab/nsp2310T310delACT---11B.1.5250.000113
ORF1ab/nsp2310T310IaCtaTt11B.1.5260.000024
ORF1ab/nsp2310T310IaCtaTt11B.1.5510.00129
ORF1ab/nsp2310T310IaCtaTt11B.1.5610.000397
ORF1ab/nsp2310T310IaCtaTt11B.1.5640.000426
ORF1ab/nsp2310T310AActGct11B.1.5950.000261
ORF1ab/nsp2310T310IaCtaTt11B.1.621.10.000506
ORF1ab/nsp2310T310TacTacC11B.40.002208
ORF1ab/nsp2310T310TacTacC11B.400.000364
ORF1ab/nsp2310T310IaCtaTt11C.160.00106
ORF1ab/nsp2310T310IaCtaTt11C.370.000116
ORF1ab/nsp2310T310AActGct11P.10.000016
ORF1ab/nsp2310T310IaCtaTt11P.1.60.001946
ORF1ab/nsp2310T310TacTacC11P.1.70.000319
ORF1ab/nsp2310T310IaCtaTt11Q.10.000126
ORF1ab/nsp2310T310IaCtaTt11Q.30.000145
ORF1ab/nsp2310T310AActGct11Q.80.000165