CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 310

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2310T310IT490InonsynaCtaTt9849810.9969511733-1735
ORF1ab/nsp2310T310IT490InonsynaCTaTA98420.002032521733-1735
ORF1ab/nsp2310T310IT490InonsynaCTaTC98410.001016261733-1735
ORF1ab/nsp2310T310TT490TsynacTacC3072240.7296421733-1735
ORF1ab/nsp2310T310TT490TsynacTacA307510.1661241733-1735
ORF1ab/nsp2310T310TT490TsynacTacG307320.1042351733-1735
ORF1ab/nsp2310T310AT490AnonsynActGct59570.9661021733-1735
ORF1ab/nsp2310T310AT490AnonsynAcTGcA5920.03389831733-1735
ORF1ab/nsp2310T310delT490deldelACT---393911733-1735
ORF1ab/nsp2310T310NT490NnonsynaCtaAt202011733-1735
ORF1ab/nsp2310T310del1T490del1delacTac-14100.7142861733-1735
ORF1ab/nsp2310T310ST490SnonsynActTct1470.51733-1735
ORF1ab/nsp2310T310ST490SnonsynaCtaGt1450.3571431733-1735
ORF1ab/nsp2310T310del1T490del1delACTWY-1420.1428571733-1735
ORF1ab/nsp2310T310ST490SnonsynAcTTcA1420.1428571733-1735
ORF1ab/nsp2310T310del1T490del1delAct-ct1410.07142861733-1735
ORF1ab/nsp2310T310del1T490del1delAcT-cG1410.07142861733-1735
ORF1ab/nsp2310T310LT490LnonsynACTTTA320.6666671733-1735
ORF1ab/nsp2310T310LT490LnonsynACTCTG310.3333331733-1735
ORF1ab/nsp2310T310YT490YnonsynACtTAt2211733-1735
ORF1ab/nsp2310T310FT490FnonsynACtTTt2211733-1735
ORF1ab/nsp2310T310PT490PnonsynActCct210.51733-1735
ORF1ab/nsp2310T310PT490PnonsynAcTCcG210.51733-1735
ORF1ab/nsp2310T310del2T490del2delACTG--1111733-1735

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2310T310IaCtaTt981984All0.000188
ORF1ab/nsp2310T310IaCTaTA2984All0
ORF1ab/nsp2310T310IaCTaTC1984All0
ORF1ab/nsp2310T310IaCtaTt574574B.1.1.70.000514
ORF1ab/nsp2310T310TacTacC224307All0.000043
ORF1ab/nsp2310T310TacTacA51307All0.00001
ORF1ab/nsp2310T310TacTacG32307All0.000006
ORF1ab/nsp2310T310AActGct5759All0.000011
ORF1ab/nsp2310T310AAcTGcA259All0
ORF1ab/nsp2310T310TacTacC4652B.1.1.70.000041
ORF1ab/nsp2310T310TacTacA352B.1.1.70.000003
ORF1ab/nsp2310T310TacTacG352B.1.1.70.000003
ORF1ab/nsp2310T310IaCtaTt5151B.1.4871
ORF1ab/nsp2310T310delACT---3939All0.000007
ORF1ab/nsp2310T310IaCtaTt3535AY.740.004048
ORF1ab/nsp2310T310TacTacC3434AY.40.000053
ORF1ab/nsp2310T310IaCtaTt3232AY.40.00005
ORF1ab/nsp2310T310IaCtaTt3030AY.430.000133
ORF1ab/nsp2310T310IaCtaTt2929B.1.2430.002018
ORF1ab/nsp2310T310TacTacA2727AY.220.056485
ORF1ab/nsp2310T310TacTacC2122AY.430.000093
ORF1ab/nsp2310T310TacTacA122AY.430.000004
ORF1ab/nsp2310T310IaCtaTt2121AY.30.000209
ORF1ab/nsp2310T310NaCtaAt2020All0.000004
ORF1ab/nsp2310T310IaCtaTt1919P.1.140.000908
ORF1ab/nsp2310T310TacTacC1818B.1.10.000327
ORF1ab/nsp2310T310TacTacC1317P.10.000205
ORF1ab/nsp2310T310TacTacG417P.10.000063
ORF1ab/nsp2310T310IaCtaTt1616AY.1030.000099
ORF1ab/nsp2310T310IaCtaTt1616B.10.000147
ORF1ab/nsp2310T310TacTacC1515B.1.20.000132
ORF1ab/nsp2310T310TacTacG1515B.1.4290.000353
ORF1ab/nsp2310T310del1acTac-1014All0.000002
ORF1ab/nsp2310T310SActTct714All0.000001
ORF1ab/nsp2310T310SaCtaGt514All0.000001
ORF1ab/nsp2310T310SAcTTcA214All0
ORF1ab/nsp2310T310del1ACTWY-214All0
ORF1ab/nsp2310T310del1AcT-cG114All0
ORF1ab/nsp2310T310del1Act-ct114All0
ORF1ab/nsp2310T310IaCtaTt1414B.1.20.000123
ORF1ab/nsp2310T310IaCtaTt1213B.1.617.20.000045
ORF1ab/nsp2310T310IaCTaTC113B.1.617.20.000004
ORF1ab/nsp2310T310TacTacC811B.1.617.20.00003
ORF1ab/nsp2310T310TacTacA311B.1.617.20.000011
ORF1ab/nsp2310T310TacTacC810AY.440.000049
ORF1ab/nsp2310T310TacTacA110AY.440.000006
ORF1ab/nsp2310T310TacTacG110AY.440.000006
ORF1ab/nsp2310T310IaCtaTt1010AY.540.000953
ORF1ab/nsp2310T310TacTacC710B.10.000064
ORF1ab/nsp2310T310TacTacA210B.10.000018
ORF1ab/nsp2310T310TacTacG110B.10.000009
ORF1ab/nsp2310T310IaCtaTt1010B.1.2650.012706
ORF1ab/nsp2310T310delACT---99B.1.1.70.000008
ORF1ab/nsp2310T310TacTacC88B.1.2580.000532
ORF1ab/nsp2310T310IaCtaTt77AY.290.00011
ORF1ab/nsp2310T310AActGct77B.1.1.70.000006
ORF1ab/nsp2310T310SActTct460.222222
ORF1ab/nsp2310T310SAcTTcA260.111111
ORF1ab/nsp2310T310AActGct66AY.1020.000159
ORF1ab/nsp2310T310TacTacC56AY.1030.000031
ORF1ab/nsp2310T310TacTacG16AY.1030.000006
ORF1ab/nsp2310T310AActGct56B.10.000046
ORF1ab/nsp2310T310AAcTGcA16B.10.000009
ORF1ab/nsp2310T310IaCtaTt55AY.250.00003
ORF1ab/nsp2310T310TacTacC45AY.250.000024
ORF1ab/nsp2310T310TacTacA15AY.250.000006
ORF1ab/nsp2310T310NaCtaAt55AY.30.00005
ORF1ab/nsp2310T310AActGct55AY.430.000022
ORF1ab/nsp2310T310IaCtaTt55B.1.10.000091
ORF1ab/nsp2310T310IaCtaTt55B.1.1770.000066
ORF1ab/nsp2310T310IaCtaTt55B.1.4220.004062
ORF1ab/nsp2310T310IaCtaTt55P.10.000079
ORF1ab/nsp2310T310IaCtaTt240.111111
ORF1ab/nsp2310T310IaCTaTA240.111111
ORF1ab/nsp2310T310TacTacC44AY.420.000161
ORF1ab/nsp2310T310IaCtaTt44AY.440.000024
ORF1ab/nsp2310T310AActGct44AY.590.002119
ORF1ab/nsp2310T310IaCtaTt44AY.630.001547
ORF1ab/nsp2310T310delACT---44B.1.1.330.001684
ORF1ab/nsp2310T310delACT---44B.1.1770.000053
ORF1ab/nsp2310T310AActGct44B.1.20.000035
ORF1ab/nsp2310T310delACT---44B.1.617.20.000015
ORF1ab/nsp2310T310TacTacA230.111111
ORF1ab/nsp2310T310TacTacG130.055556
ORF1ab/nsp2310T310LACTTTA23All0
ORF1ab/nsp2310T310LACTCTG13All0
ORF1ab/nsp2310T310TacTacC33AY.1210.000406
ORF1ab/nsp2310T310TacTacA23AY.30.00002
ORF1ab/nsp2310T310TacTacC13AY.30.00001
ORF1ab/nsp2310T310AActGct33AY.40.000005
ORF1ab/nsp2310T310IaCtaTt33AY.420.000121
ORF1ab/nsp2310T310AActGct33AY.440.000018
ORF1ab/nsp2310T310IaCtaTt33AY.470.000093
ORF1ab/nsp2310T310IaCtaTt33AY.750.000168
ORF1ab/nsp2310T310delACT---33B.1.1.3480.002389
ORF1ab/nsp2310T310IaCtaTt33B.1.1.4200.003018
ORF1ab/nsp2310T310TacTacC33B.1.5650.002431
ORF1ab/nsp2310T310IaCtaTt33B.30.002492
ORF1ab/nsp2310T310TacTacC33P.20.00056
ORF1ab/nsp2310T310LACTTTA220.111111
ORF1ab/nsp2310T310del1ACTWY-220.111111
ORF1ab/nsp2310T310YACtTAt220.111111
ORF1ab/nsp2310T310NaCtaAt220.111111
ORF1ab/nsp2310T310FACtTTt220.111111
ORF1ab/nsp2310T310FACtTTt22All0
ORF1ab/nsp2310T310YACtTAt22All0
ORF1ab/nsp2310T310PActCct12All0
ORF1ab/nsp2310T310PAcTCcG12All0
ORF1ab/nsp2310T310TacTacC12AY.1110.000183
ORF1ab/nsp2310T310TacTacA12AY.1110.000183
ORF1ab/nsp2310T310NaCtaAt22AY.1190.000071
ORF1ab/nsp2310T310IaCtaTt22AY.260.000057
ORF1ab/nsp2310T310IaCtaTt22AY.270.000129
ORF1ab/nsp2310T310TacTacC22AY.360.000296
ORF1ab/nsp2310T310IaCtaTt22AY.370.000632
ORF1ab/nsp2310T310AActGct22AY.4.30.001684
ORF1ab/nsp2310T310del1acTac-22AY.430.000009
ORF1ab/nsp2310T310AActGct22AY.50.000041
ORF1ab/nsp2310T310AActGct22B.1.10.000036
ORF1ab/nsp2310T310IaCtaTt22B.1.1.250.001137
ORF1ab/nsp2310T310del1acTac-22B.1.1.70.000002
ORF1ab/nsp2310T310NaCtaAt22B.1.1.70.000002
ORF1ab/nsp2310T310SaCtaGt12B.1.1.70.000001
ORF1ab/nsp2310T310SActTct12B.1.1.70.000001
ORF1ab/nsp2310T310AActGct22B.1.1600.000062
ORF1ab/nsp2310T310TacTacC12B.1.1770.000013
ORF1ab/nsp2310T310TacTacA12B.1.1770.000013
ORF1ab/nsp2310T310SaCtaGt22B.1.177.440.001038
ORF1ab/nsp2310T310IaCtaTt22B.1.2210.000142
ORF1ab/nsp2310T310TacTacC22B.1.221.10.005814
ORF1ab/nsp2310T310IaCtaTt22B.1.5240.002813
ORF1ab/nsp2310T310AActGct22B.1.617.20.000008
ORF1ab/nsp2310T310delACT---22N.60.014184
ORF1ab/nsp2310T310delACT---22P.20.000373
ORF1ab/nsp2310T310IaCtaTt11A.10.000282
ORF1ab/nsp2310T310TacTacG11A.2.20.001689
ORF1ab/nsp2310T310TacTacA11AD.20.000219
ORF1ab/nsp2310T310IaCtaTt11AE.80.000489
ORF1ab/nsp2310T310del2ACTG--11All0
ORF1ab/nsp2310T310IaCtaTt11AU.20.002421
ORF1ab/nsp2310T310TacTacA11AU.30.00211
ORF1ab/nsp2310T310NaCtaAt11AY.1030.000006
ORF1ab/nsp2310T310TacTacC11AY.1070.000466
ORF1ab/nsp2310T310IaCtaTt11AY.1110.000183
ORF1ab/nsp2310T310delACT---11AY.1130.000142
ORF1ab/nsp2310T310IaCtaTt11AY.1160.000287
ORF1ab/nsp2310T310TacTacC11AY.1180.000063
ORF1ab/nsp2310T310IaCtaTt11AY.1180.000063
ORF1ab/nsp2310T310AActGct11AY.1180.000063
ORF1ab/nsp2310T310delACT---11AY.1190.000035
ORF1ab/nsp2310T310TacTacC11AY.1190.000035
ORF1ab/nsp2310T310IaCtaTt11AY.120.000316
ORF1ab/nsp2310T310TacTacA11AY.1200.000037
ORF1ab/nsp2310T310AActGct11AY.1200.000037
ORF1ab/nsp2310T310IaCtaTt11AY.120.10.000321
ORF1ab/nsp2310T310SActTct11AY.140.000088
ORF1ab/nsp2310T310TacTacC11AY.200.000039
ORF1ab/nsp2310T310IaCtaTt11AY.230.00007
ORF1ab/nsp2310T310TacTacG11AY.230.00007
ORF1ab/nsp2310T310NaCtaAt11AY.260.000028
ORF1ab/nsp2310T310TacTacA11AY.260.000028
ORF1ab/nsp2310T310NaCtaAt11AY.290.000016
ORF1ab/nsp2310T310delACT---11AY.290.000016
ORF1ab/nsp2310T310IaCtaTt11AY.29.10.000221
ORF1ab/nsp2310T310delACT---11AY.30.00001
ORF1ab/nsp2310T310IaCtaTt11AY.300.000396
ORF1ab/nsp2310T310TacTacC11AY.380.000499
ORF1ab/nsp2310T310NaCtaAt11AY.40.000002
ORF1ab/nsp2310T310del1acTac-11AY.40.000002
ORF1ab/nsp2310T310IaCtaTt11AY.4.2.10.000149
ORF1ab/nsp2310T310NaCtaAt11AY.4.2.10.000149
ORF1ab/nsp2310T310delACT---11AY.430.000004
ORF1ab/nsp2310T310NaCtaAt11AY.440.000006
ORF1ab/nsp2310T310LACTCTG11AY.440.000006
ORF1ab/nsp2310T310del2ACTG--11AY.440.000006
ORF1ab/nsp2310T310TacTacG11AY.46.40.000165
ORF1ab/nsp2310T310PAcTCcG11AY.470.000031
ORF1ab/nsp2310T310IaCtaTt11AY.50.000021
ORF1ab/nsp2310T310IaCtaTt11AY.5.30.000337
ORF1ab/nsp2310T310TacTacA11AY.530.000288
ORF1ab/nsp2310T310IaCtaTt11AY.590.00053
ORF1ab/nsp2310T310IaCtaTt11AY.60.000041
ORF1ab/nsp2310T310TacTacC11AY.610.000105
ORF1ab/nsp2310T310del1Act-ct11AY.670.000464
ORF1ab/nsp2310T310TacTacG11AY.690.000187
ORF1ab/nsp2310T310TacTacC11AY.790.001211
ORF1ab/nsp2310T310del1AcT-cG11AY.850.000427
ORF1ab/nsp2310T310IaCtaTt11AY.90.000068
ORF1ab/nsp2310T310TacTacC11AY.9.10.000084
ORF1ab/nsp2310T310delACT---11AY.9.20.000037
ORF1ab/nsp2310T310TacTacC11AY.9.20.000037
ORF1ab/nsp2310T310IaCtaTt11AY.970.001701
ORF1ab/nsp2310T310AActGct11AY.980.000079
ORF1ab/nsp2310T310delACT---11AY.990.001049
ORF1ab/nsp2310T310IaCtaTt11B0.000128
ORF1ab/nsp2310T310NaCtaAt11B.10.000009
ORF1ab/nsp2310T310SActTct11B.1.10.000018
ORF1ab/nsp2310T310TacTacC11B.1.1.1210.002427
ORF1ab/nsp2310T310del1acTac-11B.1.1.1590.004673
ORF1ab/nsp2310T310IaCtaTt11B.1.1.1610.003534
ORF1ab/nsp2310T310IaCtaTt11B.1.1.1860.003436
ORF1ab/nsp2310T310AActGct11B.1.1.2140.000055
ORF1ab/nsp2310T310delACT---11B.1.1.2840.000107
ORF1ab/nsp2310T310TacTacC11B.1.1.4290.004608
ORF1ab/nsp2310T310IaCtaTt11B.1.1.5190.00004
ORF1ab/nsp2310T310AActGct11B.1.1470.000756
ORF1ab/nsp2310T310del1acTac-11B.1.1600.000031
ORF1ab/nsp2310T310SaCtaGt11B.1.1770.000013
ORF1ab/nsp2310T310del1acTac-11B.1.1770.000013
ORF1ab/nsp2310T310AActGct11B.1.1770.000013
ORF1ab/nsp2310T310delACT---11B.1.177.160.000664
ORF1ab/nsp2310T310IaCtaTt11B.1.177.210.000076
ORF1ab/nsp2310T310TacTacG11B.1.177.510.004566
ORF1ab/nsp2310T310delACT---11B.1.177.570.000281
ORF1ab/nsp2310T310IaCtaTt11B.1.177.730.000566
ORF1ab/nsp2310T310del1acTac-11B.1.20.000009
ORF1ab/nsp2310T310SaCtaGt11B.1.20.000009
ORF1ab/nsp2310T310IaCtaTt11B.1.2060.000816
ORF1ab/nsp2310T310IaCtaTt11B.1.2340.000132
ORF1ab/nsp2310T310NaCtaAt11B.1.2580.000067
ORF1ab/nsp2310T310TacTacC11B.1.258.170.000104
ORF1ab/nsp2310T310IaCtaTt11B.1.3060.005714
ORF1ab/nsp2310T310AActGct11B.1.3110.000275
ORF1ab/nsp2310T310PActCct11B.1.3320.003497
ORF1ab/nsp2310T310TacTacA11B.1.3330.010526
ORF1ab/nsp2310T310IaCtaTt11B.1.3510.00003
ORF1ab/nsp2310T310IaCtaTt11B.1.3560.001727
ORF1ab/nsp2310T310IaCtaTt11B.1.360.000146
ORF1ab/nsp2310T310del1acTac-11B.1.36.170.000494
ORF1ab/nsp2310T310TacTacC11B.1.36.290.000517
ORF1ab/nsp2310T310NaCtaAt11B.1.4290.000024
ORF1ab/nsp2310T310TacTacA11B.1.4460.02
ORF1ab/nsp2310T310AAcTGcA11B.1.4460.02
ORF1ab/nsp2310T310IaCtaTt11B.1.4530.003236
ORF1ab/nsp2310T310TacTacG11B.1.4620.007246
ORF1ab/nsp2310T310IaCtaTt11B.1.466.20.000391
ORF1ab/nsp2310T310TacTacC11B.1.5250.000113
ORF1ab/nsp2310T310IaCtaTt11B.1.5250.000113
ORF1ab/nsp2310T310delACT---11B.1.5250.000113
ORF1ab/nsp2310T310IaCtaTt11B.1.5260.000024
ORF1ab/nsp2310T310IaCtaTt11B.1.5510.00129
ORF1ab/nsp2310T310IaCtaTt11B.1.5610.000397
ORF1ab/nsp2310T310IaCtaTt11B.1.5640.000426
ORF1ab/nsp2310T310AActGct11B.1.5950.000261
ORF1ab/nsp2310T310IaCtaTt11B.1.621.10.000506
ORF1ab/nsp2310T310TacTacC11B.40.002208
ORF1ab/nsp2310T310TacTacC11B.400.000364
ORF1ab/nsp2310T310IaCtaTt11C.160.00106
ORF1ab/nsp2310T310IaCtaTt11C.370.000116
ORF1ab/nsp2310T310AActGct11P.10.000016
ORF1ab/nsp2310T310IaCtaTt11P.1.60.001946
ORF1ab/nsp2310T310TacTacC11P.1.70.000319
ORF1ab/nsp2310T310IaCtaTt11Q.10.000126
ORF1ab/nsp2310T310IaCtaTt11Q.30.000145
ORF1ab/nsp2310T310AActGct11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.