CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 308

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2308V308VV488VsyngtGgtA36992368290.9955941727-1729
ORF1ab/nsp2308V308VV488VsyngtGgtT369921590.004298231727-1729
ORF1ab/nsp2308V308VV488VsyngtGgtC3699240.0001081311727-1729
ORF1ab/nsp2308V308MV488MnonsynGtgAtg30530511727-1729
ORF1ab/nsp2308V308AV488AnonsyngTggCg24424411727-1729
ORF1ab/nsp2308V308LV488LnonsynGtgTtg1521490.9802631727-1729
ORF1ab/nsp2308V308LV488LnonsynGtgCtg15220.01315791727-1729
ORF1ab/nsp2308V308LV488LnonsynGtGTtA15210.006578951727-1729
ORF1ab/nsp2308V308delV488deldelGTG---393911727-1729
ORF1ab/nsp2308V308GV488GnonsyngTggGg1280.6666671727-1729
ORF1ab/nsp2308V308GV488GnonsyngTGgGC1220.1666671727-1729
ORF1ab/nsp2308V308GV488GnonsyngTGgGA1210.08333331727-1729
ORF1ab/nsp2308V308GV488GnonsyngTGgGT1210.08333331727-1729
ORF1ab/nsp2308V308EV488EnonsyngTggAg1190.8181821727-1729
ORF1ab/nsp2308V308EV488EnonsyngTGgAA1120.1818181727-1729
ORF1ab/nsp2308V308del1V488del1delgtGgt-630.51727-1729
ORF1ab/nsp2308V308del1V488del1delGtg-tg620.3333331727-1729
ORF1ab/nsp2308V308del1V488del1delgTGgC-610.1666671727-1729
ORF1ab/nsp2308V308FV488FnonsynGtGTtC540.81727-1729
ORF1ab/nsp2308V308XV488XnonsynGTgTAg530.61727-1729
ORF1ab/nsp2308V308DV488DnonsyngTGgAT530.61727-1729
ORF1ab/nsp2308V308DV488DnonsyngTGgAC520.41727-1729
ORF1ab/nsp2308V308XV488XnonsynGTGTGA510.21727-1729
ORF1ab/nsp2308V308XV488XnonsynGTGTAA510.21727-1729
ORF1ab/nsp2308V308FV488FnonsynGtGTtT510.21727-1729
ORF1ab/nsp2308V308CV488CnonsynGTGTGT420.51727-1729
ORF1ab/nsp2308V308CV488CnonsynGTGTGC420.51727-1729
ORF1ab/nsp2308V308WV488WnonsynGTgTGg3311727-1729
ORF1ab/nsp2308V308YV488YnonsynGTGTAC320.6666671727-1729
ORF1ab/nsp2308V308YV488YnonsynGTGTAT310.3333331727-1729
ORF1ab/nsp2308V308RV488RnonsynGTgAGg210.51727-1729
ORF1ab/nsp2308V308RV488RnonsynGTgCGg210.51727-1729
ORF1ab/nsp2308V308del2V488del2delGTG--A1111727-1729

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2308V308VgtGgtA3682936992All0.007044
ORF1ab/nsp2308V308VgtGgtT15936992All0.00003
ORF1ab/nsp2308V308VgtGgtC436992All0.000001
ORF1ab/nsp2308V308VgtGgtA2305223052AY.9.20.846691
ORF1ab/nsp2308V308VgtGgtA1182011820AY.9.10.989618
ORF1ab/nsp2308V308VgtGgtA506506AY.9.2.11
ORF1ab/nsp2308V308MGtgAtg305305All0.000058
ORF1ab/nsp2308V308VgtGgtA276287AY.430.001223
ORF1ab/nsp2308V308VgtGgtT11287AY.430.000049
ORF1ab/nsp2308V308VgtGgtA261274B.1.1.70.000234
ORF1ab/nsp2308V308VgtGgtT13274B.1.1.70.000012
ORF1ab/nsp2308V308AgTggCg244244All0.000047
ORF1ab/nsp2308V308LGtgTtg149152All0.000028
ORF1ab/nsp2308V308LGtgCtg2152All0
ORF1ab/nsp2308V308LGtGTtA1152All0
ORF1ab/nsp2308V308AgTggCg148148B.1.1.70.000132
ORF1ab/nsp2308V308VgtGgtA107110B.1.617.20.000403
ORF1ab/nsp2308V308VgtGgtT3110B.1.617.20.000011
ORF1ab/nsp2308V308VgtGgtA77100B.10.000705
ORF1ab/nsp2308V308VgtGgtT23100B.10.000211
ORF1ab/nsp2308V308VgtGgtA7083AY.250.000421
ORF1ab/nsp2308V308VgtGgtT1383AY.250.000078
ORF1ab/nsp2308V308MGtgAtg6161B.1.1.70.000055
ORF1ab/nsp2308V308VgtGgtA5053AY.40.000078
ORF1ab/nsp2308V308VgtGgtT353AY.40.000005
ORF1ab/nsp2308V308VgtGgtA5353B.1.1770.000698
ORF1ab/nsp2308V308MGtgAtg4545AY.1030.000279
ORF1ab/nsp2308V308VgtGgtA3844AY.440.000231
ORF1ab/nsp2308V308VgtGgtT644AY.440.000037
ORF1ab/nsp2308V308AgTggCg4141AY.1030.000255
ORF1ab/nsp2308V308delGTG---3939All0.000007
ORF1ab/nsp2308V308MGtgAtg3737AY.440.000225
ORF1ab/nsp2308V308VgtGgtA2727P.1.120.013069
ORF1ab/nsp2308V308VgtGgtA1924B.1.20.000167
ORF1ab/nsp2308V308VgtGgtT524B.1.20.000044
ORF1ab/nsp2308V308VgtGgtA2323B.1.1.250.013076
ORF1ab/nsp2308V308VgtGgtA2323B.1.1.3160.021277
ORF1ab/nsp2308V308LGtgTtg2323B.1.1.70.000021
ORF1ab/nsp2308V308VgtGgtA2222AY.390.000544
ORF1ab/nsp2308V308MGtgAtg2222B.1.617.20.000083
ORF1ab/nsp2308V308VgtGgtA2020AY.750.00112
ORF1ab/nsp2308V308LGtgTtg1919AY.250.000114
ORF1ab/nsp2308V308VgtGgtA1318P.10.000205
ORF1ab/nsp2308V308VgtGgtT518P.10.000079
ORF1ab/nsp2308V308LGtgTtg1717AY.40.000026
ORF1ab/nsp2308V308VgtGgtA1416AY.1030.000087
ORF1ab/nsp2308V308VgtGgtT216AY.1030.000012
ORF1ab/nsp2308V308VgtGgtA1616AY.90.001082
ORF1ab/nsp2308V308MGtgAtg1515AY.40.000023
ORF1ab/nsp2308V308VgtGgtA1415B.1.10.000254
ORF1ab/nsp2308V308VgtGgtT115B.1.10.000018
ORF1ab/nsp2308V308GgTggGg812All0.000002
ORF1ab/nsp2308V308GgTGgGC212All0
ORF1ab/nsp2308V308GgTGgGA112All0
ORF1ab/nsp2308V308GgTGgGT112All0
ORF1ab/nsp2308V308EgTggAg911All0.000002
ORF1ab/nsp2308V308EgTGgAA211All0
ORF1ab/nsp2308V308MGtgAtg1111AY.1190.000388
ORF1ab/nsp2308V308MGtgAtg1111B.1.1770.000145
ORF1ab/nsp2308V308VgtGgtA1111B.1.258.170.001144
ORF1ab/nsp2308V308VgtGgtA1010AY.4.20.000217
ORF1ab/nsp2308V308VgtGgtA1010AY.690.001867
ORF1ab/nsp2308V308VgtGgtA610B.1.1.5190.000238
ORF1ab/nsp2308V308VgtGgtT410B.1.1.5190.000159
ORF1ab/nsp2308V308LGtgTtg99AY.1030.000056
ORF1ab/nsp2308V308VgtGgtA99AY.970.015306
ORF1ab/nsp2308V308LGtgTtg99B.10.000082
ORF1ab/nsp2308V308VgtGgtT99B.1.1.4620.077586
ORF1ab/nsp2308V308delGTG---99B.1.1.70.000008
ORF1ab/nsp2308V308MGtgAtg99B.1.177.70.001484
ORF1ab/nsp2308V308VgtGgtA99B.1.2430.000626
ORF1ab/nsp2308V308VgtGgtA69B.1.4290.000141
ORF1ab/nsp2308V308VgtGgtT39B.1.4290.000071
ORF1ab/nsp2308V308VgtGgtA99Q.40.004093
ORF1ab/nsp2308V308VgtGgtA78AY.1020.000186
ORF1ab/nsp2308V308VgtGgtT18AY.1020.000027
ORF1ab/nsp2308V308VgtGgtA88AY.1200.000297
ORF1ab/nsp2308V308MGtgAtg88AY.250.000048
ORF1ab/nsp2308V308VgtGgtA88AY.330.000534
ORF1ab/nsp2308V308VgtGgtA88AY.4.2.10.001192
ORF1ab/nsp2308V308MGtgAtg88AY.430.000035
ORF1ab/nsp2308V308MGtgAtg88B.1.20.00007
ORF1ab/nsp2308V308VgtGgtA88B.1.6090.003835
ORF1ab/nsp2308V308LGtgTtg88B.1.617.20.00003
ORF1ab/nsp2308V308GgTggGg370.166667
ORF1ab/nsp2308V308GgTGgGC270.111111
ORF1ab/nsp2308V308GgTGgGA170.055556
ORF1ab/nsp2308V308GgTGgGT170.055556
ORF1ab/nsp2308V308VgtGgtA77AY.30.00007
ORF1ab/nsp2308V308VgtGgtA77AY.470.000218
ORF1ab/nsp2308V308VgtGgtA67AY.540.000572
ORF1ab/nsp2308V308VgtGgtT17AY.540.000095
ORF1ab/nsp2308V308VgtGgtA67B.1.2210.000426
ORF1ab/nsp2308V308VgtGgtT17B.1.2210.000071
ORF1ab/nsp2308V308VgtGgtA67C.370.000696
ORF1ab/nsp2308V308VgtGgtT17C.370.000116
ORF1ab/nsp2308V308LGtgTtg560.277778
ORF1ab/nsp2308V308VgtGgtC460.222222
ORF1ab/nsp2308V308LGtGTtA160.055556
ORF1ab/nsp2308V308VgtGgtT160.055556
ORF1ab/nsp2308V308VgtGgtA160.055556
ORF1ab/nsp2308V308del1gtGgt-36All0.000001
ORF1ab/nsp2308V308del1Gtg-tg26All0
ORF1ab/nsp2308V308del1gTGgC-16All0
ORF1ab/nsp2308V308LGtgTtg66AY.1020.000159
ORF1ab/nsp2308V308VgtGgtA66AY.16.10.00282
ORF1ab/nsp2308V308VgtGgtA66AY.260.00017
ORF1ab/nsp2308V308VgtGgtA56AY.50.000103
ORF1ab/nsp2308V308VgtGgtT16AY.50.000021
ORF1ab/nsp2308V308MGtgAtg66B.1.177.150.003785
ORF1ab/nsp2308V308VgtGgtA66B.1.360.000875
ORF1ab/nsp2308V308AgTggCg66B.1.617.20.000023
ORF1ab/nsp2308V308FGtGTtC450.222222
ORF1ab/nsp2308V308XGTgTAg350.166667
ORF1ab/nsp2308V308XGTGTAA150.055556
ORF1ab/nsp2308V308XGTGTGA150.055556
ORF1ab/nsp2308V308FGtGTtT150.055556
ORF1ab/nsp2308V308FGtGTtC45All0.000001
ORF1ab/nsp2308V308DgTGgAT35All0.000001
ORF1ab/nsp2308V308XGTgTAg35All0.000001
ORF1ab/nsp2308V308DgTGgAC25All0
ORF1ab/nsp2308V308XGTGTAA15All0
ORF1ab/nsp2308V308FGtGTtT15All0
ORF1ab/nsp2308V308XGTGTGA15All0
ORF1ab/nsp2308V308VgtGgtA45AY.290.000063
ORF1ab/nsp2308V308VgtGgtT15AY.290.000016
ORF1ab/nsp2308V308VgtGgtA55AY.300.001979
ORF1ab/nsp2308V308MGtgAtg55AY.390.000124
ORF1ab/nsp2308V308VgtGgtT45AY.39.10.000158
ORF1ab/nsp2308V308VgtGgtA15AY.39.10.00004
ORF1ab/nsp2308V308VgtGgtA55AY.450.000608
ORF1ab/nsp2308V308VgtGgtA55AY.460.00052
ORF1ab/nsp2308V308VgtGgtA55AY.680.001369
ORF1ab/nsp2308V308VgtGgtA55AY.75.10.000902
ORF1ab/nsp2308V308LGtgTtg55B.1.177.550.011655
ORF1ab/nsp2308V308VgtGgtA55B.1.3690.001426
ORF1ab/nsp2308V308VgtGgtA45B.1.5260.000094
ORF1ab/nsp2308V308VgtGgtT15B.1.5260.000024
ORF1ab/nsp2308V308EgTggAg340.166667
ORF1ab/nsp2308V308EgTGgAA140.055556
ORF1ab/nsp2308V308CGTGTGC24All0
ORF1ab/nsp2308V308CGTGTGT24All0
ORF1ab/nsp2308V308VgtGgtA24AY.1170.000169
ORF1ab/nsp2308V308VgtGgtT24AY.1170.000169
ORF1ab/nsp2308V308VgtGgtT24AY.1190.000071
ORF1ab/nsp2308V308VgtGgtA24AY.1190.000071
ORF1ab/nsp2308V308VgtGgtT24AY.200.000078
ORF1ab/nsp2308V308VgtGgtA24AY.200.000078
ORF1ab/nsp2308V308VgtGgtT34AY.3.10.000256
ORF1ab/nsp2308V308VgtGgtA14AY.3.10.000085
ORF1ab/nsp2308V308AgTggCg44AY.40.000006
ORF1ab/nsp2308V308MGtgAtg44AY.410.001176
ORF1ab/nsp2308V308LGtgTtg44AY.430.000018
ORF1ab/nsp2308V308MGtgAtg44AY.5.40.001107
ORF1ab/nsp2308V308LGtgTtg44AY.98.10.000194
ORF1ab/nsp2308V308delGTG---44B.1.1.330.001684
ORF1ab/nsp2308V308VgtGgtA24B.1.1600.000062
ORF1ab/nsp2308V308VgtGgtT24B.1.1600.000062
ORF1ab/nsp2308V308LGtgTtg44B.1.2580.000266
ORF1ab/nsp2308V308MGtgAtg44B.1.3960.002823
ORF1ab/nsp2308V308delGTG---44B.1.617.20.000015
ORF1ab/nsp2308V308VgtGgtA44B.1.6190.003484
ORF1ab/nsp2308V308WGTgTGg330.166667
ORF1ab/nsp2308V308CGTGTGC230.111111
ORF1ab/nsp2308V308YGTGTAC230.111111
ORF1ab/nsp2308V308DgTGgAC230.111111
ORF1ab/nsp2308V308CGTGTGT130.055556
ORF1ab/nsp2308V308DgTGgAT130.055556
ORF1ab/nsp2308V308YGTGTAT130.055556
ORF1ab/nsp2308V308WGTgTGg33All0.000001
ORF1ab/nsp2308V308YGTGTAC23All0
ORF1ab/nsp2308V308YGTGTAT13All0
ORF1ab/nsp2308V308VgtGgtA33AY.100.00159
ORF1ab/nsp2308V308VgtGgtA33AY.230.000209
ORF1ab/nsp2308V308VgtGgtA33AY.340.000291
ORF1ab/nsp2308V308AgTggCg33AY.39.10.000119
ORF1ab/nsp2308V308VgtGgtA23AY.420.00008
ORF1ab/nsp2308V308VgtGgtT13AY.420.00004
ORF1ab/nsp2308V308del1gtGgt-33AY.440.000018
ORF1ab/nsp2308V308AgTggCg33AY.470.000093
ORF1ab/nsp2308V308VgtGgtA33AY.700.000626
ORF1ab/nsp2308V308AgTggCg33AY.750.000168
ORF1ab/nsp2308V308VgtGgtA33AY.98.10.000145
ORF1ab/nsp2308V308AgTggCg33B.10.000027
ORF1ab/nsp2308V308VgtGgtA33B.1.1.1570.00274
ORF1ab/nsp2308V308VgtGgtA33B.1.1.1590.014019
ORF1ab/nsp2308V308VgtGgtA33B.1.1.2260.017442
ORF1ab/nsp2308V308VgtGgtT33B.1.1.3120.005736
ORF1ab/nsp2308V308VgtGgtA33B.1.1.3330.003229
ORF1ab/nsp2308V308delGTG---33B.1.1.3480.002389
ORF1ab/nsp2308V308VgtGgtT33B.1.1.40.008929
ORF1ab/nsp2308V308EgTggAg33B.1.160.140.006356
ORF1ab/nsp2308V308delGTG---33B.1.1770.00004
ORF1ab/nsp2308V308AgTggCg33B.1.20.000026
ORF1ab/nsp2308V308LGtgTtg23B.1.20.000018
ORF1ab/nsp2308V308LGtgCtg13B.1.20.000009
ORF1ab/nsp2308V308VgtGgtA33B.1.3510.000089
ORF1ab/nsp2308V308MGtgAtg33B.1.5960.000261
ORF1ab/nsp2308V308AgTggCg33P.10.000047
ORF1ab/nsp2308V308VgtGgtT33P.1.40.00293
ORF1ab/nsp2308V308VgtGgtA22A.10.000564
ORF1ab/nsp2308V308RGTgAGg12All0
ORF1ab/nsp2308V308RGTgCGg12All0
ORF1ab/nsp2308V308VgtGgtA22AY.1000.000092
ORF1ab/nsp2308V308VgtGgtA22AY.1180.000125
ORF1ab/nsp2308V308MGtgAtg22AY.260.000057
ORF1ab/nsp2308V308MGtgAtg22AY.30.00002
ORF1ab/nsp2308V308AgTggCg22AY.30.00002
ORF1ab/nsp2308V308LGtgTtg22AY.3.10.000171
ORF1ab/nsp2308V308VgtGgtA22AY.320.001065
ORF1ab/nsp2308V308VgtGgtT22AY.34.10.00102
ORF1ab/nsp2308V308MGtgAtg22AY.39.10.000079
ORF1ab/nsp2308V308VgtGgtT12AY.4.40.000409
ORF1ab/nsp2308V308VgtGgtA12AY.4.40.000409
ORF1ab/nsp2308V308LGtgTtg22AY.440.000012
ORF1ab/nsp2308V308MGtgAtg22AY.450.000243
ORF1ab/nsp2308V308MGtgAtg22AY.470.000062
ORF1ab/nsp2308V308MGtgAtg22AY.50.000041
ORF1ab/nsp2308V308VgtGgtA22AY.610.00021
ORF1ab/nsp2308V308VgtGgtA22AY.650.001066
ORF1ab/nsp2308V308MGtgAtg22AY.690.000373
ORF1ab/nsp2308V308VgtGgtA22AY.710.00095
ORF1ab/nsp2308V308MGtgAtg22AY.75.10.000361
ORF1ab/nsp2308V308LGtgTtg22AY.890.009804
ORF1ab/nsp2308V308VgtGgtA22AY.930.000546
ORF1ab/nsp2308V308del1Gtg-tg22B.10.000018
ORF1ab/nsp2308V308LGtgTtg22B.1.10.000036
ORF1ab/nsp2308V308MGtgAtg22B.1.10.000036
ORF1ab/nsp2308V308AgTggCg22B.1.1.1710.007353
ORF1ab/nsp2308V308VgtGgtT22B.1.1.2140.000111
ORF1ab/nsp2308V308MGtgAtg22B.1.1.250.001137
ORF1ab/nsp2308V308VgtGgtT22B.1.1.3720.001377
ORF1ab/nsp2308V308VgtGgtA22B.1.177.60.001953
ORF1ab/nsp2308V308VgtGgtA22B.1.177.630.005405
ORF1ab/nsp2308V308MGtgAtg22B.1.2430.000139
ORF1ab/nsp2308V308VgtGgtA22B.1.2580.000133
ORF1ab/nsp2308V308VgtGgtA22B.1.30.005236
ORF1ab/nsp2308V308VgtGgtA22B.1.350.016949
ORF1ab/nsp2308V308VgtGgtA22B.1.3750.001639
ORF1ab/nsp2308V308VgtGgtA22B.1.3990.003868
ORF1ab/nsp2308V308VgtGgtA22B.1.4270.000101
ORF1ab/nsp2308V308AgTggCg22B.1.4290.000047
ORF1ab/nsp2308V308VgtGgtT22B.1.5250.000226
ORF1ab/nsp2308V308VgtGgtT12B.1.617.10.000129
ORF1ab/nsp2308V308VgtGgtA12B.1.617.10.000129
ORF1ab/nsp2308V308VgtGgtA22B.1.9.50.011364
ORF1ab/nsp2308V308VgtGgtT22D.20.00015
ORF1ab/nsp2308V308delGTG---22N.60.014184
ORF1ab/nsp2308V308VgtGgtA12P.1.70.000319
ORF1ab/nsp2308V308VgtGgtT12P.1.70.000319
ORF1ab/nsp2308V308delGTG---22P.20.000373
ORF1ab/nsp2308V308VgtGgtA11AA.10.007246
ORF1ab/nsp2308V308LGtgTtg11AL.10.012987
ORF1ab/nsp2308V308del2GTG--A11All0
ORF1ab/nsp2308V308VgtGgtA11AY.10.000396
ORF1ab/nsp2308V308VgtGgtA11AY.1100.000113
ORF1ab/nsp2308V308delGTG---11AY.1130.000142
ORF1ab/nsp2308V308VgtGgtA11AY.1160.000287
ORF1ab/nsp2308V308VgtGgtA11AY.116.10.000311
ORF1ab/nsp2308V308MGtgAtg11AY.1180.000063
ORF1ab/nsp2308V308LGtgTtg11AY.1180.000063
ORF1ab/nsp2308V308delGTG---11AY.1190.000035
ORF1ab/nsp2308V308LGtgTtg11AY.1190.000035
ORF1ab/nsp2308V308VgtGgtA11AY.120.000316
ORF1ab/nsp2308V308LGtgTtg11AY.1200.000037
ORF1ab/nsp2308V308MGtgAtg11AY.1200.000037
ORF1ab/nsp2308V308MGtgAtg11AY.120.10.000321
ORF1ab/nsp2308V308AgTggCg11AY.120.2.10.000498
ORF1ab/nsp2308V308VgtGgtA11AY.120.2.10.000498
ORF1ab/nsp2308V308VgtGgtA11AY.1210.000135
ORF1ab/nsp2308V308VgtGgtA11AY.130.000161
ORF1ab/nsp2308V308VgtGgtA11AY.140.000088
ORF1ab/nsp2308V308VgtGgtA11AY.150.002222
ORF1ab/nsp2308V308MGtgAtg11AY.170.008197
ORF1ab/nsp2308V308LGtgTtg11AY.190.00114
ORF1ab/nsp2308V308AgTggCg11AY.270.000065
ORF1ab/nsp2308V308AgTggCg11AY.290.000016
ORF1ab/nsp2308V308LGtgTtg11AY.290.000016
ORF1ab/nsp2308V308delGTG---11AY.290.000016
ORF1ab/nsp2308V308AgTggCg11AY.29.10.000221
ORF1ab/nsp2308V308LGtgTtg11AY.30.00001
ORF1ab/nsp2308V308delGTG---11AY.30.00001
ORF1ab/nsp2308V308AgTggCg11AY.3.10.000085
ORF1ab/nsp2308V308VgtGgtT11AY.380.000499
ORF1ab/nsp2308V308AgTggCg11AY.390.000025
ORF1ab/nsp2308V308AgTggCg11AY.4.20.000022
ORF1ab/nsp2308V308MGtgAtg11AY.4.20.000022
ORF1ab/nsp2308V308MGtgAtg11AY.4.2.10.000149
ORF1ab/nsp2308V308LGtgTtg11AY.4.40.000409
ORF1ab/nsp2308V308AgTggCg11AY.4.50.000107
ORF1ab/nsp2308V308VgtGgtA11AY.4.50.000107
ORF1ab/nsp2308V308LGtgTtg11AY.420.00004
ORF1ab/nsp2308V308AgTggCg11AY.420.00004
ORF1ab/nsp2308V308delGTG---11AY.430.000004
ORF1ab/nsp2308V308DgTGgAT11AY.440.000006
ORF1ab/nsp2308V308AgTggCg11AY.440.000006
ORF1ab/nsp2308V308EgTGgAA11AY.440.000006
ORF1ab/nsp2308V308AgTggCg11AY.460.000104
ORF1ab/nsp2308V308VgtGgtA11AY.46.10.001027
ORF1ab/nsp2308V308LGtgTtg11AY.50.000021
ORF1ab/nsp2308V308VgtGgtA11AY.520.000814
ORF1ab/nsp2308V308MGtgAtg11AY.540.000095
ORF1ab/nsp2308V308VgtGgtA11AY.550.000917
ORF1ab/nsp2308V308VgtGgtA11AY.590.00053
ORF1ab/nsp2308V308LGtgTtg11AY.60.000041
ORF1ab/nsp2308V308VgtGgtA11AY.7.10.000113
ORF1ab/nsp2308V308MGtgAtg11AY.700.000209
ORF1ab/nsp2308V308VgtGgtT11AY.770.001127
ORF1ab/nsp2308V308RGTgAGg11AY.790.001211
ORF1ab/nsp2308V308VgtGgtA11AY.840.000437
ORF1ab/nsp2308V308LGtgTtg11AY.90.000068
ORF1ab/nsp2308V308delGTG---11AY.9.20.000037
ORF1ab/nsp2308V308AgTggCg11AY.900.000684
ORF1ab/nsp2308V308MGtgAtg11AY.930.000273
ORF1ab/nsp2308V308VgtGgtA11AY.960.002075
ORF1ab/nsp2308V308MGtgAtg11AY.980.000079
ORF1ab/nsp2308V308MGtgAtg11AY.98.10.000048
ORF1ab/nsp2308V308delGTG---11AY.990.001049
ORF1ab/nsp2308V308VgtGgtT11AY.99.20.000092
ORF1ab/nsp2308V308VgtGgtT11B0.000128
ORF1ab/nsp2308V308CGTGTGT11B.10.000009
ORF1ab/nsp2308V308MGtgAtg11B.10.000009
ORF1ab/nsp2308V308VgtGgtA11B.1.1.1640.005155
ORF1ab/nsp2308V308LGtgTtg11B.1.1.1940.00495
ORF1ab/nsp2308V308VgtGgtA11B.1.1.2070.001182
ORF1ab/nsp2308V308VgtGgtA11B.1.1.2160.00089
ORF1ab/nsp2308V308VgtGgtA11B.1.1.2200.001859
ORF1ab/nsp2308V308VgtGgtA11B.1.1.2220.000204
ORF1ab/nsp2308V308AgTggCg11B.1.1.250.000569
ORF1ab/nsp2308V308VgtGgtA11B.1.1.2570.009709
ORF1ab/nsp2308V308LGtgTtg11B.1.1.280.000311
ORF1ab/nsp2308V308AgTggCg11B.1.1.280.000311
ORF1ab/nsp2308V308MGtgAtg11B.1.1.2830.023256
ORF1ab/nsp2308V308delGTG---11B.1.1.2840.000107
ORF1ab/nsp2308V308VgtGgtT11B.1.1.3060.000438
ORF1ab/nsp2308V308LGtgTtg11B.1.1.3480.000796
ORF1ab/nsp2308V308LGtgTtg11B.1.1.3600.03125
ORF1ab/nsp2308V308GgTggGg11B.1.1.4330.001425
ORF1ab/nsp2308V308VgtGgtA11B.1.1.4640.001473
ORF1ab/nsp2308V308del1gTGgC-11B.1.1.5150.02
ORF1ab/nsp2308V308LGtgTtg11B.1.1.5190.00004
ORF1ab/nsp2308V308VgtGgtA11B.1.1.630.000386
ORF1ab/nsp2308V308DgTGgAT11B.1.1.70.000001
ORF1ab/nsp2308V308LGtgTtg11B.1.1.700.000341
ORF1ab/nsp2308V308LGtgTtg11B.1.1180.006711
ORF1ab/nsp2308V308AgTggCg11B.1.1280.000635
ORF1ab/nsp2308V308LGtgTtg11B.1.1600.000031
ORF1ab/nsp2308V308MGtgAtg11B.1.1600.000031
ORF1ab/nsp2308V308AgTggCg11B.1.160.260.002421
ORF1ab/nsp2308V308LGtgCtg11B.1.160.320.004292
ORF1ab/nsp2308V308AgTggCg11B.1.1770.000013
ORF1ab/nsp2308V308LGtgTtg11B.1.1770.000013
ORF1ab/nsp2308V308delGTG---11B.1.177.160.000664
ORF1ab/nsp2308V308MGtgAtg11B.1.177.230.003236
ORF1ab/nsp2308V308GgTggGg11B.1.177.350.000691
ORF1ab/nsp2308V308delGTG---11B.1.177.570.000281
ORF1ab/nsp2308V308VgtGgtT11B.1.177.620.001192
ORF1ab/nsp2308V308MGtgAtg11B.1.177.630.002703
ORF1ab/nsp2308V308delGTG---11B.1.177.730.000566
ORF1ab/nsp2308V308VgtGgtA11B.1.177.820.000477
ORF1ab/nsp2308V308LGtgTtg11B.1.1820.007246
ORF1ab/nsp2308V308RGTgCGg11B.1.20.000009
ORF1ab/nsp2308V308GgTggGg11B.1.20.000009
ORF1ab/nsp2308V308del2GTG--A11B.1.20.000009
ORF1ab/nsp2308V308VgtGgtA11B.1.2130.014925
ORF1ab/nsp2308V308EgTggAg11B.1.2400.000216
ORF1ab/nsp2308V308MGtgAtg11B.1.2580.000067
ORF1ab/nsp2308V308MGtgAtg11B.1.3110.000275
ORF1ab/nsp2308V308GgTggGg11B.1.3490.000715
ORF1ab/nsp2308V308VgtGgtA11B.1.351.20.000303
ORF1ab/nsp2308V308AgTggCg11B.1.351.20.000303
ORF1ab/nsp2308V308VgtGgtA11B.1.3560.001727
ORF1ab/nsp2308V308VgtGgtT11B.1.36.210.00216
ORF1ab/nsp2308V308VgtGgtA11B.1.36.290.000517
ORF1ab/nsp2308V308VgtGgtT11B.1.36.310.001751
ORF1ab/nsp2308V308VgtGgtT11B.1.3620.001541
ORF1ab/nsp2308V308VgtGgtA11B.1.4040.001302
ORF1ab/nsp2308V308LGtgTtg11B.1.4110.003704
ORF1ab/nsp2308V308VgtGgtA11B.1.4480.002625
ORF1ab/nsp2308V308VgtGgtA11B.1.5090.000866
ORF1ab/nsp2308V308delGTG---11B.1.5250.000113
ORF1ab/nsp2308V308MGtgAtg11B.1.5260.000024
ORF1ab/nsp2308V308LGtgTtg11B.1.5640.000426
ORF1ab/nsp2308V308VgtGgtA11B.1.5730.006098
ORF1ab/nsp2308V308LGtgTtg11B.1.5770.000687
ORF1ab/nsp2308V308VgtGgtA11B.1.5820.000491
ORF1ab/nsp2308V308VgtGgtA11B.1.5950.000261
ORF1ab/nsp2308V308VgtGgtA11B.1.5960.000087
ORF1ab/nsp2308V308AgTggCg11B.1.5960.000087
ORF1ab/nsp2308V308AgTggCg11B.1.6090.000479
ORF1ab/nsp2308V308MGtgAtg11B.1.617.10.000129
ORF1ab/nsp2308V308EgTggAg11B.1.617.20.000004
ORF1ab/nsp2308V308VgtGgtA11B.1.6370.000073
ORF1ab/nsp2308V308GgTggGg11B.1.90.006173
ORF1ab/nsp2308V308VgtGgtT11B.550.00295
ORF1ab/nsp2308V308VgtGgtT11C.140.004329
ORF1ab/nsp2308V308VgtGgtA11N.70.029412
ORF1ab/nsp2308V308LGtgTtg11P.10.000016
ORF1ab/nsp2308V308MGtgAtg11P.10.000016
ORF1ab/nsp2308V308AgTggCg11P.1.130.000898
ORF1ab/nsp2308V308VgtGgtT11P.1.140.000048
ORF1ab/nsp2308V308VgtGgtA11P.20.000187
ORF1ab/nsp2308V308MGtgAtg11P.60.003145
ORF1ab/nsp2308V308EgTggAg11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.