CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 304

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2304T304AT484AnonsynAcaGca9869840.9979721715-1717
ORF1ab/nsp2304T304AT484AnonsynAcAGcC98620.00202841715-1717
ORF1ab/nsp2304T304IT484InonsynaCaaTa95095011715-1717
ORF1ab/nsp2304T304TT484TsynacAacG2682100.7835821715-1717
ORF1ab/nsp2304T304TT484TsynacAacT268320.1194031715-1717
ORF1ab/nsp2304T304TT484TsynacAacC268260.09701491715-1717
ORF1ab/nsp2304T304delT484deldelACA---454511715-1717
ORF1ab/nsp2304T304PT484PnonsynAcaCca272711715-1717
ORF1ab/nsp2304T304KT484KnonsynaCaaAa262611715-1717
ORF1ab/nsp2304T304ST484SnonsynAcaTca530.61715-1717
ORF1ab/nsp2304T304ST484SnonsynAcATcC510.21715-1717
ORF1ab/nsp2304T304ST484SnonsynAcATcG510.21715-1717
ORF1ab/nsp2304T304RT484RnonsynaCaaGa2211715-1717
ORF1ab/nsp2304T304del1T484del1delAca-ca210.51715-1717
ORF1ab/nsp2304T304del1T484del1delacAac-210.51715-1717
ORF1ab/nsp2304T304GT484GnonsynACAGGG1111715-1717
ORF1ab/nsp2304T304ET484EnonsynACAGAG1111715-1717
ORF1ab/nsp2304T304del2T484del2delACa--a1111715-1717

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2304T304AAcaGca984986All0.000188
ORF1ab/nsp2304T304AAcAGcC2986All0
ORF1ab/nsp2304T304IaCaaTa950950All0.000182
ORF1ab/nsp2304T304AAcaGca575575B.1.4040.748698
ORF1ab/nsp2304T304IaCaaTa389389B.1.1.70.000348
ORF1ab/nsp2304T304TacAacG210268All0.00004
ORF1ab/nsp2304T304TacAacT32268All0.000006
ORF1ab/nsp2304T304TacAacC26268All0.000005
ORF1ab/nsp2304T304AAcaGca9292B.1.1600.002869
ORF1ab/nsp2304T304AAcaGca8585AY.40.000132
ORF1ab/nsp2304T304TacAacG7475AY.40.000115
ORF1ab/nsp2304T304TacAacT175AY.40.000002
ORF1ab/nsp2304T304IaCaaTa7171AY.40.000111
ORF1ab/nsp2304T304AAcaGca6868B.10.000623
ORF1ab/nsp2304T304delACA---4545All0.000009
ORF1ab/nsp2304T304IaCaaTa4545B.1.617.20.000169
ORF1ab/nsp2304T304TacAacG2243B.1.1.70.00002
ORF1ab/nsp2304T304TacAacT2043B.1.1.70.000018
ORF1ab/nsp2304T304TacAacC143B.1.1.70.000001
ORF1ab/nsp2304T304IaCaaTa3838AY.620.016558
ORF1ab/nsp2304T304IaCaaTa3636B.1.110.30.025862
ORF1ab/nsp2304T304TacAacG3335B.1.617.20.000124
ORF1ab/nsp2304T304TacAacC235B.1.617.20.000008
ORF1ab/nsp2304T304IaCaaTa2929AY.440.000177
ORF1ab/nsp2304T304IaCaaTa2828AY.1000.001288
ORF1ab/nsp2304T304PAcaCca2727All0.000005
ORF1ab/nsp2304T304AAcaGca2727B.1.1.4200.027163
ORF1ab/nsp2304T304KaCaaAa2626All0.000005
ORF1ab/nsp2304T304IaCaaTa2626AY.250.000156
ORF1ab/nsp2304T304IaCaaTa2222AY.1070.010252
ORF1ab/nsp2304T304AAcaGca2020B.1.1.70.000018
ORF1ab/nsp2304T304IaCaaTa1919P.10.000299
ORF1ab/nsp2304T304IaCaaTa1818B.1.20.000158
ORF1ab/nsp2304T304IaCaaTa1616B.10.000147
ORF1ab/nsp2304T304TacAacC1515B.1.6210.001328
ORF1ab/nsp2304T304IaCaaTa1313AY.1030.000081
ORF1ab/nsp2304T304IaCaaTa1313B.1.5260.000306
ORF1ab/nsp2304T304AAcaGca1111B.1.20.000097
ORF1ab/nsp2304T304IaCaaTa1010B.1.10.000181
ORF1ab/nsp2304T304IaCaaTa1010B.1.4270.000505
ORF1ab/nsp2304T304IaCaaTa99AY.9.20.000331
ORF1ab/nsp2304T304delACA---99B.1.1.70.000008
ORF1ab/nsp2304T304IaCaaTa99B.1.438.10.000965
ORF1ab/nsp2304T304TacAacG88AY.430.000035
ORF1ab/nsp2304T304IaCaaTa88AY.99.20.000737
ORF1ab/nsp2304T304TacAacT78B.1.10.000127
ORF1ab/nsp2304T304TacAacG18B.1.10.000018
ORF1ab/nsp2304T304IaCaaTa77AY.1020.000186
ORF1ab/nsp2304T304IaCaaTa77AY.30.00007
ORF1ab/nsp2304T304AAcaGca77AY.390.000173
ORF1ab/nsp2304T304AAcaGca77AY.430.000031
ORF1ab/nsp2304T304TacAacG77B.1.20.000062
ORF1ab/nsp2304T304TacAacG77B.1.4270.000353
ORF1ab/nsp2304T304AAcaGca77B.1.617.20.000026
ORF1ab/nsp2304T304AAcaGca66AY.1020.000159
ORF1ab/nsp2304T304AAcaGca66AY.200.000233
ORF1ab/nsp2304T304AAcaGca66AY.50.000124
ORF1ab/nsp2304T304IaCaaTa66AY.9.10.000502
ORF1ab/nsp2304T304IaCaaTa66B.1.1.5190.000238
ORF1ab/nsp2304T304KaCaaAa66B.1.1.70.000005
ORF1ab/nsp2304T304IaCaaTa66B.1.1600.000187
ORF1ab/nsp2304T304SAcaTca35All0.000001
ORF1ab/nsp2304T304SAcATcG15All0
ORF1ab/nsp2304T304SAcATcC15All0
ORF1ab/nsp2304T304IaCaaTa55AY.200.000194
ORF1ab/nsp2304T304AAcaGca55AY.30.00005
ORF1ab/nsp2304T304PAcaCca55AY.320.002662
ORF1ab/nsp2304T304KaCaaAa55AY.40.000008
ORF1ab/nsp2304T304IaCaaTa55AY.430.000022
ORF1ab/nsp2304T304TacAacG55AY.440.00003
ORF1ab/nsp2304T304IaCaaTa55AY.750.00028
ORF1ab/nsp2304T304PAcaCca55B.10.000046
ORF1ab/nsp2304T304IaCaaTa55B.1.3110.001373
ORF1ab/nsp2304T304PAcaCca55B.1.4700.007022
ORF1ab/nsp2304T304KaCaaAa55B.1.5170.002135
ORF1ab/nsp2304T304IaCaaTa55B.1.5390.087719
ORF1ab/nsp2304T304IaCaaTa55B.1.6280.001762
ORF1ab/nsp2304T304TacAacG55B.400.001821
ORF1ab/nsp2304T304TacAacG55P.10.000079
ORF1ab/nsp2304T304AAcAGcC240.111111
ORF1ab/nsp2304T304AAcaGca240.111111
ORF1ab/nsp2304T304TacAacC240.111111
ORF1ab/nsp2304T304TacAacT240.111111
ORF1ab/nsp2304T304TacAacG44AY.30.00004
ORF1ab/nsp2304T304AAcaGca44AY.670.001857
ORF1ab/nsp2304T304IaCaaTa44AY.9.2.10.007905
ORF1ab/nsp2304T304AAcaGca44B.1.10.000073
ORF1ab/nsp2304T304delACA---44B.1.1.330.001684
ORF1ab/nsp2304T304IaCaaTa44B.1.1770.000053
ORF1ab/nsp2304T304delACA---44B.1.1770.000053
ORF1ab/nsp2304T304AAcaGca44B.1.5960.000349
ORF1ab/nsp2304T304TacAacG33AY.1000.000138
ORF1ab/nsp2304T304IaCaaTa33AY.1190.000106
ORF1ab/nsp2304T304IaCaaTa33AY.160.001139
ORF1ab/nsp2304T304PAcaCca33AY.250.000018
ORF1ab/nsp2304T304AAcaGca33AY.250.000018
ORF1ab/nsp2304T304TacAacG33AY.34.10.00153
ORF1ab/nsp2304T304IaCaaTa33AY.4.20.000065
ORF1ab/nsp2304T304IaCaaTa33AY.770.003382
ORF1ab/nsp2304T304TacAacG33B.10.000027
ORF1ab/nsp2304T304IaCaaTa33B.1.1.2770.002276
ORF1ab/nsp2304T304delACA---33B.1.1.3480.002389
ORF1ab/nsp2304T304KaCaaAa33B.1.20.000026
ORF1ab/nsp2304T304AAcaGca33B.1.2410.002435
ORF1ab/nsp2304T304IaCaaTa33B.1.258.170.000312
ORF1ab/nsp2304T304AAcaGca33B.1.360.000438
ORF1ab/nsp2304T304AAcaGca33B.1.4290.000071
ORF1ab/nsp2304T304IaCaaTa33B.1.617.10.000387
ORF1ab/nsp2304T304delACA---33B.1.617.20.000011
ORF1ab/nsp2304T304IaCaaTa33B.1.6210.000266
ORF1ab/nsp2304T304TacAacG33R.10.00027
ORF1ab/nsp2304T304RaCaaGa22All0
ORF1ab/nsp2304T304del1acAac-12All0
ORF1ab/nsp2304T304del1Aca-ca12All0
ORF1ab/nsp2304T304IaCaaTa22AY.10.000791
ORF1ab/nsp2304T304TacAacG22AY.1020.000053
ORF1ab/nsp2304T304TacAacG22AY.1030.000012
ORF1ab/nsp2304T304AAcaGca22AY.1210.000271
ORF1ab/nsp2304T304TacAacG22AY.250.000012
ORF1ab/nsp2304T304TacAacG22AY.270.000129
ORF1ab/nsp2304T304AAcaGca22AY.290.000032
ORF1ab/nsp2304T304IaCaaTa22AY.330.000134
ORF1ab/nsp2304T304TacAacG22AY.330.000134
ORF1ab/nsp2304T304delACA---22AY.40.000003
ORF1ab/nsp2304T304AAcaGca22AY.420.00008
ORF1ab/nsp2304T304SAcATcG12AY.440.000006
ORF1ab/nsp2304T304SAcATcC12AY.440.000006
ORF1ab/nsp2304T304AAcaGca22AY.540.000191
ORF1ab/nsp2304T304IaCaaTa22AY.90.000135
ORF1ab/nsp2304T304IaCaaTa22B.1.1.3970.004505
ORF1ab/nsp2304T304del1acAac-12B.1.1.70.000001
ORF1ab/nsp2304T304del1Aca-ca12B.1.1.70.000001
ORF1ab/nsp2304T304AAcaGca22B.1.1460.008475
ORF1ab/nsp2304T304IaCaaTa22B.1.2210.000142
ORF1ab/nsp2304T304IaCaaTa22B.1.2430.000139
ORF1ab/nsp2304T304KaCaaAa22B.1.5260.000047
ORF1ab/nsp2304T304TacAacG12B.1.5260.000024
ORF1ab/nsp2304T304TacAacT12B.1.5260.000024
ORF1ab/nsp2304T304KaCaaAa22B.1.617.10.000258
ORF1ab/nsp2304T304PAcaCca22B.1.617.20.000008
ORF1ab/nsp2304T304delACA---22N.60.014184
ORF1ab/nsp2304T304IaCaaTa22P.1.170.000324
ORF1ab/nsp2304T304delACA---22P.20.000373
ORF1ab/nsp2304T304delACA---11A0.000387
ORF1ab/nsp2304T304IaCaaTa11A.20.000662
ORF1ab/nsp2304T304GACAGGG11All0
ORF1ab/nsp2304T304del2ACa--a11All0
ORF1ab/nsp2304T304EACAGAG11All0
ORF1ab/nsp2304T304AAcaGca11AY.1030.000006
ORF1ab/nsp2304T304TacAacG11AY.1060.000335
ORF1ab/nsp2304T304IaCaaTa11AY.1090.00074
ORF1ab/nsp2304T304IaCaaTa11AY.1110.000183
ORF1ab/nsp2304T304PAcaCca11AY.1130.000142
ORF1ab/nsp2304T304delACA---11AY.1130.000142
ORF1ab/nsp2304T304IaCaaTa11AY.1170.000085
ORF1ab/nsp2304T304AAcaGca11AY.1170.000085
ORF1ab/nsp2304T304AAcaGca11AY.1180.000063
ORF1ab/nsp2304T304TacAacG11AY.1190.000035
ORF1ab/nsp2304T304delACA---11AY.1190.000035
ORF1ab/nsp2304T304IaCaaTa11AY.1200.000037
ORF1ab/nsp2304T304TacAacG11AY.1210.000135
ORF1ab/nsp2304T304AAcaGca11AY.140.000088
ORF1ab/nsp2304T304AAcaGca11AY.230.00007
ORF1ab/nsp2304T304SAcaTca11AY.250.000006
ORF1ab/nsp2304T304delACA---11AY.290.000016
ORF1ab/nsp2304T304TacAacG11AY.290.000016
ORF1ab/nsp2304T304delACA---11AY.30.00001
ORF1ab/nsp2304T304TacAacG11AY.3.10.000085
ORF1ab/nsp2304T304AAcaGca11AY.3.10.000085
ORF1ab/nsp2304T304TacAacC11AY.380.000499
ORF1ab/nsp2304T304IaCaaTa11AY.390.000025
ORF1ab/nsp2304T304del2ACa--a11AY.40.000002
ORF1ab/nsp2304T304AAcaGca11AY.4.10.000737
ORF1ab/nsp2304T304TacAacG11AY.4.20.000022
ORF1ab/nsp2304T304IaCaaTa11AY.4.50.000107
ORF1ab/nsp2304T304RaCaaGa11AY.4.50.000107
ORF1ab/nsp2304T304delACA---11AY.4.50.000107
ORF1ab/nsp2304T304delACA---11AY.430.000004
ORF1ab/nsp2304T304PAcaCca11AY.440.000006
ORF1ab/nsp2304T304delACA---11AY.440.000006
ORF1ab/nsp2304T304IaCaaTa11AY.450.000122
ORF1ab/nsp2304T304TacAacC11AY.46.10.001027
ORF1ab/nsp2304T304PAcaCca11AY.46.20.000635
ORF1ab/nsp2304T304TacAacG11AY.46.20.000635
ORF1ab/nsp2304T304TacAacG11AY.470.000031
ORF1ab/nsp2304T304IaCaaTa11AY.470.000031
ORF1ab/nsp2304T304TacAacG11AY.5.40.000277
ORF1ab/nsp2304T304IaCaaTa11AY.540.000095
ORF1ab/nsp2304T304IaCaaTa11AY.550.000917
ORF1ab/nsp2304T304IaCaaTa11AY.580.000907
ORF1ab/nsp2304T304IaCaaTa11AY.590.00053
ORF1ab/nsp2304T304delACA---11AY.670.000464
ORF1ab/nsp2304T304TacAacG11AY.7.10.000113
ORF1ab/nsp2304T304AAcaGca11AY.790.001211
ORF1ab/nsp2304T304EACAGAG11AY.9.20.000037
ORF1ab/nsp2304T304IaCaaTa11AY.920.000287
ORF1ab/nsp2304T304AAcaGca11AY.980.000079
ORF1ab/nsp2304T304TacAacG11AY.980.000079
ORF1ab/nsp2304T304delACA---11AY.990.001049
ORF1ab/nsp2304T304IaCaaTa11B0.000128
ORF1ab/nsp2304T304AAcaGca11B0.000128
ORF1ab/nsp2304T304PAcaCca11B.1.10.000018
ORF1ab/nsp2304T304AAcaGca11B.1.1.10.000327
ORF1ab/nsp2304T304TacAacC11B.1.1.1440.028571
ORF1ab/nsp2304T304AAcaGca11B.1.1.250.000569
ORF1ab/nsp2304T304delACA---11B.1.1.2840.000107
ORF1ab/nsp2304T304IaCaaTa11B.1.1.3040.002809
ORF1ab/nsp2304T304AAcaGca11B.1.1.3070.002532
ORF1ab/nsp2304T304IaCaaTa11B.1.1.3170.000412
ORF1ab/nsp2304T304SAcaTca11B.1.1.70.000001
ORF1ab/nsp2304T304PAcaCca11B.1.1.70.000001
ORF1ab/nsp2304T304GACAGGG11B.1.1.70.000001
ORF1ab/nsp2304T304IaCaaTa11B.1.1100.004525
ORF1ab/nsp2304T304TacAacG11B.1.1600.000031
ORF1ab/nsp2304T304delACA---11B.1.177.160.000664
ORF1ab/nsp2304T304AAcaGca11B.1.177.210.000076
ORF1ab/nsp2304T304delACA---11B.1.177.40.000211
ORF1ab/nsp2304T304IaCaaTa11B.1.177.440.000519
ORF1ab/nsp2304T304delACA---11B.1.177.570.000281
ORF1ab/nsp2304T304TacAacC11B.1.177.730.000566
ORF1ab/nsp2304T304IaCaaTa11B.1.177.810.000189
ORF1ab/nsp2304T304AAcaGca11B.1.1790.003759
ORF1ab/nsp2304T304IaCaaTa11B.1.1820.007246
ORF1ab/nsp2304T304PAcaCca11B.1.20.000009
ORF1ab/nsp2304T304AAcaGca11B.1.2340.000132
ORF1ab/nsp2304T304KaCaaAa11B.1.2400.000216
ORF1ab/nsp2304T304AAcaGca11B.1.2400.000216
ORF1ab/nsp2304T304AAcaGca11B.1.2430.00007
ORF1ab/nsp2304T304TacAacC11B.1.2430.00007
ORF1ab/nsp2304T304IaCaaTa11B.1.2820.014925
ORF1ab/nsp2304T304TacAacG11B.1.3460.001311
ORF1ab/nsp2304T304IaCaaTa11B.1.3490.000715
ORF1ab/nsp2304T304KaCaaAa11B.1.3510.00003
ORF1ab/nsp2304T304PAcaCca11B.1.3510.00003
ORF1ab/nsp2304T304IaCaaTa11B.1.3510.00003
ORF1ab/nsp2304T304TacAacG11B.1.36.100.004785
ORF1ab/nsp2304T304delACA---11B.1.36.240.006173
ORF1ab/nsp2304T304AAcaGca11B.1.3750.00082
ORF1ab/nsp2304T304TacAacT11B.1.3980.002976
ORF1ab/nsp2304T304AAcaGca11B.1.4270.00005
ORF1ab/nsp2304T304IaCaaTa11B.1.4290.000024
ORF1ab/nsp2304T304AAcaGca11B.1.4560.003268
ORF1ab/nsp2304T304IaCaaTa11B.1.466.20.000391
ORF1ab/nsp2304T304delACA---11B.1.5250.000113
ORF1ab/nsp2304T304RaCaaGa11B.1.5610.000397
ORF1ab/nsp2304T304AAcaGca11B.1.5610.000397
ORF1ab/nsp2304T304AAcaGca11B.1.5650.00081
ORF1ab/nsp2304T304IaCaaTa11B.1.5790.011236
ORF1ab/nsp2304T304AAcaGca11B.1.5820.000491
ORF1ab/nsp2304T304KaCaaAa11B.1.5960.000087
ORF1ab/nsp2304T304TacAacC11B.1.6090.000479
ORF1ab/nsp2304T304IaCaaTa11B.1.6090.000479
ORF1ab/nsp2304T304AAcaGca11B.1.810.021277
ORF1ab/nsp2304T304TacAacG11B.6.60.000889
ORF1ab/nsp2304T304AAcaGca11C.370.000116
ORF1ab/nsp2304T304SAcaTca11D.20.000075
ORF1ab/nsp2304T304IaCaaTa11D.20.000075
ORF1ab/nsp2304T304IaCaaTa11P.1.150.000232
ORF1ab/nsp2304T304TacAacG11P.20.000187
ORF1ab/nsp2304T304IaCaaTa11P.20.000187
ORF1ab/nsp2304T304IaCaaTa11Q.80.000165
ORF1ab/nsp2304T304IaCaaTa11R.10.00009