CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 281

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2281I281II461IsynatCatT221222040.9963831646-1648
ORF1ab/nsp2281I281II461IsynatCatA221280.003616641646-1648
ORF1ab/nsp2281I281VI461VnonsynAtcGtc1931910.9896371646-1648
ORF1ab/nsp2281I281VI461VnonsynAtCGtT19310.005181351646-1648
ORF1ab/nsp2281I281VI461VnonsynAtCGtA19310.005181351646-1648
ORF1ab/nsp2281I281delI461deldelATC---383811646-1648
ORF1ab/nsp2281I281TI461TnonsynaTcaCc31300.9677421646-1648
ORF1ab/nsp2281I281TI461TnonsynaTCaCT3110.03225811646-1648
ORF1ab/nsp2281I281FI461FnonsynAtcTtc22180.8181821646-1648
ORF1ab/nsp2281I281FI461FnonsynAtCTtT2240.1818181646-1648
ORF1ab/nsp2281I281NI461NnonsynaTcaAc19180.9473681646-1648
ORF1ab/nsp2281I281NI461NnonsynaTCaAT1910.05263161646-1648
ORF1ab/nsp2281I281LI461LnonsynAtcCtc17150.8823531646-1648
ORF1ab/nsp2281I281LI461LnonsynAtCCtA1710.05882351646-1648
ORF1ab/nsp2281I281LI461LnonsynAtCTtA1710.05882351646-1648
ORF1ab/nsp2281I281SI461SnonsynATCTCT840.51646-1648
ORF1ab/nsp2281I281SI461SnonsynATcTCc820.251646-1648
ORF1ab/nsp2281I281SI461SnonsynaTcaGc820.251646-1648
ORF1ab/nsp2281I281MI461MnonsynatCatG3311646-1648
ORF1ab/nsp2281I281EI461EnonsynATCGAA1111646-1648
ORF1ab/nsp2281I281DI461DnonsynATCGAT1111646-1648
ORF1ab/nsp2281I281XI461XnonsynATCTAA1111646-1648
ORF1ab/nsp2281I281YI461YnonsynATCTAT1111646-1648
ORF1ab/nsp2281I281del2I461del2delATc--c1111646-1648
ORF1ab/nsp2281I281KI461KnonsynaTCaAA1111646-1648

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2281I281IatCatT22042212All0.000422
ORF1ab/nsp2281I281IatCatA82212All0.000002
ORF1ab/nsp2281I281IatCatT11731174B.1.10.021279
ORF1ab/nsp2281I281IatCatA11174B.1.10.000018
ORF1ab/nsp2281I281IatCatT199200B.1.1.70.000178
ORF1ab/nsp2281I281IatCatA1200B.1.1.70.000001
ORF1ab/nsp2281I281VAtcGtc191193All0.000037
ORF1ab/nsp2281I281VAtCGtT1193All0
ORF1ab/nsp2281I281VAtCGtA1193All0
ORF1ab/nsp2281I281IatCatT6262AY.40.000096
ORF1ab/nsp2281I281IatCatT6262B.1.1.2770.047041
ORF1ab/nsp2281I281IatCatT5757B.1.1.3380.982759
ORF1ab/nsp2281I281IatCatT5555B.1.1.3360.916667
ORF1ab/nsp2281I281IatCatT5454B.1.1.5220.931034
ORF1ab/nsp2281I281IatCatT5151AY.250.000307
ORF1ab/nsp2281I281delATC---3838All0.000007
ORF1ab/nsp2281I281IatCatT3838AY.450.004624
ORF1ab/nsp2281I281TaTcaCc3031All0.000006
ORF1ab/nsp2281I281TaTCaCT131All0
ORF1ab/nsp2281I281IatCatT3030AY.430.000133
ORF1ab/nsp2281I281IatCatT3030AY.440.000183
ORF1ab/nsp2281I281VAtcGtc2525AY.40.000039
ORF1ab/nsp2281I281VAtcGtc2424AY.1030.000149
ORF1ab/nsp2281I281FAtcTtc1822All0.000003
ORF1ab/nsp2281I281FAtCTtT422All0.000001
ORF1ab/nsp2281I281VAtcGtc2222B.1.1.2840.002363
ORF1ab/nsp2281I281IatCatT2121B.1.617.20.000079
ORF1ab/nsp2281I281IatCatT2020B.1.20.000176
ORF1ab/nsp2281I281NaTcaAc1819All0.000003
ORF1ab/nsp2281I281NaTCaAT119All0
ORF1ab/nsp2281I281IatCatT1919B.1.1770.00025
ORF1ab/nsp2281I281IatCatT1818B.1.1.5190.000715
ORF1ab/nsp2281I281LAtcCtc1517All0.000003
ORF1ab/nsp2281I281LAtCCtA117All0
ORF1ab/nsp2281I281LAtCTtA117All0
ORF1ab/nsp2281I281IatCatT1717B.1.1.3190.298246
ORF1ab/nsp2281I281FAtcTtc1617B.1.1.70.000014
ORF1ab/nsp2281I281FAtCTtT117B.1.1.70.000001
ORF1ab/nsp2281I281VAtcGtc1416B.1.1.70.000013
ORF1ab/nsp2281I281VAtCGtT116B.1.1.70.000001
ORF1ab/nsp2281I281VAtCGtA116B.1.1.70.000001
ORF1ab/nsp2281I281IatCatT1616B.1.2580.001065
ORF1ab/nsp2281I281IatCatT1515B.10.000137
ORF1ab/nsp2281I281IatCatT1515B.1.1.10.0049
ORF1ab/nsp2281I281VAtcGtc1515B.1.617.20.000056
ORF1ab/nsp2281I281IatCatT1313P.10.000205
ORF1ab/nsp2281I281IatCatT1212AY.30.000119
ORF1ab/nsp2281I281VAtcGtc1212AY.430.000053
ORF1ab/nsp2281I281IatCatT1212AY.850.005126
ORF1ab/nsp2281I281IatCatT1212B.1.6090.005753
ORF1ab/nsp2281I281VAtcGtc1111A.10.0031
ORF1ab/nsp2281I281VAtcGtc1111AY.30.000109
ORF1ab/nsp2281I281IatCatT1010B.1.5260.000235
ORF1ab/nsp2281I281IatCatT99B.1.1.2690.012179
ORF1ab/nsp2281I281IatCatT99B.1.1.4090.025496
ORF1ab/nsp2281I281SATCTCT48All0.000001
ORF1ab/nsp2281I281SATcTCc28All0
ORF1ab/nsp2281I281SaTcaGc28All0
ORF1ab/nsp2281I281TaTcaCc88B.10.000073
ORF1ab/nsp2281I281IatCatT88B.1.1.1170.07767
ORF1ab/nsp2281I281IatCatT88B.1.1.2240.114286
ORF1ab/nsp2281I281delATC---88B.1.1.70.000007
ORF1ab/nsp2281I281IatCatT77B.1.1.4470.25
ORF1ab/nsp2281I281IatCatT67B.1.2210.000426
ORF1ab/nsp2281I281IatCatA17B.1.2210.000071
ORF1ab/nsp2281I281IatCatT77B.1.351.20.002118
ORF1ab/nsp2281I281VAtcGtc66B.1.177.110.010187
ORF1ab/nsp2281I281IatCatT55AY.980.000395
ORF1ab/nsp2281I281IatCatT55B.1.1.100.005574
ORF1ab/nsp2281I281IatCatT55B.1.1.1940.024752
ORF1ab/nsp2281I281VAtcGtc55B.1.1.630.001929
ORF1ab/nsp2281I281IatCatT55C.370.00058
ORF1ab/nsp2281I281VAtcGtc55P.10.000079
ORF1ab/nsp2281I281IatCatT44AY.200.000155
ORF1ab/nsp2281I281VAtcGtc44AY.250.000024
ORF1ab/nsp2281I281IatCatT44AY.260.000113
ORF1ab/nsp2281I281NaTcaAc44B.10.000037
ORF1ab/nsp2281I281IatCatT44B.1.1.3170.001647
ORF1ab/nsp2281I281delATC---44B.1.1.330.001684
ORF1ab/nsp2281I281IatCatT44B.1.177.430.005908
ORF1ab/nsp2281I281IatCatT44B.1.351.30.003506
ORF1ab/nsp2281I281IatCatT44B.1.4290.000094
ORF1ab/nsp2281I281VAtcGtc44B.1.5650.003241
ORF1ab/nsp2281I281MatCatG33All0.000001
ORF1ab/nsp2281I281IatCatT33AY.4.40.001227
ORF1ab/nsp2281I281TaTcaCc33AY.430.000013
ORF1ab/nsp2281I281SATCTCT23AY.430.000009
ORF1ab/nsp2281I281SaTcaGc13AY.430.000004
ORF1ab/nsp2281I281IatCatT33AY.460.000312
ORF1ab/nsp2281I281delATC---33AY.850.001282
ORF1ab/nsp2281I281VAtcGtc33AY.920.000862
ORF1ab/nsp2281I281VAtcGtc33AY.98.10.000145
ORF1ab/nsp2281I281delATC---33B.1.1.3480.002389
ORF1ab/nsp2281I281NaTcaAc23B.1.1.70.000002
ORF1ab/nsp2281I281NaTCaAT13B.1.1.70.000001
ORF1ab/nsp2281I281SATcTCc23B.1.617.20.000008
ORF1ab/nsp2281I281TaTcaCc23B.1.617.20.000008
ORF1ab/nsp2281I281SATCTCT13B.1.617.20.000004
ORF1ab/nsp2281I281TaTCaCT13B.1.617.20.000004
ORF1ab/nsp2281I281delATC---22A0.000774
ORF1ab/nsp2281I281VAtcGtc22AY.1020.000053
ORF1ab/nsp2281I281IatCatT22AY.1020.000053
ORF1ab/nsp2281I281IatCatT22AY.1030.000012
ORF1ab/nsp2281I281IatCatT22AY.1140.000462
ORF1ab/nsp2281I281IatCatT22AY.1160.000574
ORF1ab/nsp2281I281IatCatT22AY.140.000176
ORF1ab/nsp2281I281IatCatT22AY.270.000129
ORF1ab/nsp2281I281VAtcGtc22AY.290.000032
ORF1ab/nsp2281I281IatCatT22AY.290.000032
ORF1ab/nsp2281I281LAtcCtc22AY.30.00002
ORF1ab/nsp2281I281IatCatT22AY.390.000049
ORF1ab/nsp2281I281LAtcCtc22AY.39.10.000079
ORF1ab/nsp2281I281IatCatA12AY.39.10.00004
ORF1ab/nsp2281I281IatCatT12AY.39.10.00004
ORF1ab/nsp2281I281TaTcaCc22AY.40.000003
ORF1ab/nsp2281I281TaTcaCc22AY.46.60.000144
ORF1ab/nsp2281I281IatCatT22AY.470.000062
ORF1ab/nsp2281I281IatCatT22AY.9.20.000073
ORF1ab/nsp2281I281LAtcCtc12AY.990.001049
ORF1ab/nsp2281I281LAtCCtA12AY.990.001049
ORF1ab/nsp2281I281IatCatT22B0.000256
ORF1ab/nsp2281I281IatCatT22B.1.1.1980.002937
ORF1ab/nsp2281I281IatCatT22B.1.1.2540.022472
ORF1ab/nsp2281I281IatCatT22B.1.1.2980.001724
ORF1ab/nsp2281I281VAtcGtc22B.1.1.3180.000604
ORF1ab/nsp2281I281IatCatT22B.1.1.3850.008929
ORF1ab/nsp2281I281IatCatT22B.1.1.4160.00181
ORF1ab/nsp2281I281IatCatT22B.1.1.4190.014815
ORF1ab/nsp2281I281IatCatT22B.1.1.4300.083333
ORF1ab/nsp2281I281LAtCTtA12B.1.1.70.000001
ORF1ab/nsp2281I281LAtcCtc12B.1.1.70.000001
ORF1ab/nsp2281I281IatCatT22B.1.1.80.007168
ORF1ab/nsp2281I281IatCatT22B.1.1600.000062
ORF1ab/nsp2281I281IatCatT22B.1.177.810.000379
ORF1ab/nsp2281I281VAtcGtc22B.1.20.000018
ORF1ab/nsp2281I281delATC---22B.1.617.20.000008
ORF1ab/nsp2281I281FAtcTtc12B.1.617.20.000004
ORF1ab/nsp2281I281FAtCTtT12B.1.617.20.000004
ORF1ab/nsp2281I281NaTcaAc22D.20.00015
ORF1ab/nsp2281I281TaTcaCc22D.20.00015
ORF1ab/nsp2281I281IatCatT12D.20.000075
ORF1ab/nsp2281I281IatCatA12D.20.000075
ORF1ab/nsp2281I281delATC---22N.60.014184
ORF1ab/nsp2281I281LAtcCtc22P.10.000032
ORF1ab/nsp2281I281delATC---22P.20.000373
ORF1ab/nsp2281I281VAtcGtc11A0.000387
ORF1ab/nsp2281I281NaTcaAc11A.50.001923
ORF1ab/nsp2281I281del2ATc--c11All0
ORF1ab/nsp2281I281DATCGAT11All0
ORF1ab/nsp2281I281KaTCaAA11All0
ORF1ab/nsp2281I281EATCGAA11All0
ORF1ab/nsp2281I281XATCTAA11All0
ORF1ab/nsp2281I281YATCTAT11All0
ORF1ab/nsp2281I281IatCatT11AU.20.002421
ORF1ab/nsp2281I281VAtcGtc11AY.1000.000046
ORF1ab/nsp2281I281TaTcaCc11AY.1030.000006
ORF1ab/nsp2281I281IatCatT11AY.1080.001103
ORF1ab/nsp2281I281LAtcCtc11AY.1130.000142
ORF1ab/nsp2281I281delATC---11AY.1130.000142
ORF1ab/nsp2281I281delATC---11AY.1190.000035
ORF1ab/nsp2281I281VAtcGtc11AY.1190.000035
ORF1ab/nsp2281I281VAtcGtc11AY.140.000088
ORF1ab/nsp2281I281VAtcGtc11AY.23.10.000417
ORF1ab/nsp2281I281TaTcaCc11AY.250.000006
ORF1ab/nsp2281I281VAtcGtc11AY.260.000028
ORF1ab/nsp2281I281delATC---11AY.290.000016
ORF1ab/nsp2281I281delATC---11AY.30.00001
ORF1ab/nsp2281I281NaTcaAc11AY.30.00001
ORF1ab/nsp2281I281VAtcGtc11AY.300.000396
ORF1ab/nsp2281I281IatCatT11AY.330.000067
ORF1ab/nsp2281I281VAtcGtc11AY.350.000233
ORF1ab/nsp2281I281VAtcGtc11AY.360.000148
ORF1ab/nsp2281I281IatCatT11AY.360.000148
ORF1ab/nsp2281I281FAtCTtT11AY.39.10.00004
ORF1ab/nsp2281I281LAtcCtc11AY.40.000002
ORF1ab/nsp2281I281FAtcTtc11AY.40.000002
ORF1ab/nsp2281I281IatCatT11AY.420.00004
ORF1ab/nsp2281I281delATC---11AY.430.000004
ORF1ab/nsp2281I281LAtcCtc11AY.430.000004
ORF1ab/nsp2281I281VAtcGtc11AY.440.000006
ORF1ab/nsp2281I281NaTcaAc11AY.440.000006
ORF1ab/nsp2281I281TaTcaCc11AY.440.000006
ORF1ab/nsp2281I281TaTcaCc11AY.450.000122
ORF1ab/nsp2281I281NaTcaAc11AY.460.000104
ORF1ab/nsp2281I281VAtcGtc11AY.470.000031
ORF1ab/nsp2281I281TaTcaCc11AY.470.000031
ORF1ab/nsp2281I281TaTcaCc11AY.50.000021
ORF1ab/nsp2281I281IatCatT11AY.50.000021
ORF1ab/nsp2281I281delATC---11AY.60.000041
ORF1ab/nsp2281I281delATC---11AY.670.000464
ORF1ab/nsp2281I281VAtcGtc11AY.750.000056
ORF1ab/nsp2281I281SATCTCT11AY.840.000437
ORF1ab/nsp2281I281FAtCTtT11AY.840.000437
ORF1ab/nsp2281I281delATC---11AY.9.20.000037
ORF1ab/nsp2281I281IatCatT11AY.930.000273
ORF1ab/nsp2281I281IatCatT11AY.98.10.000048
ORF1ab/nsp2281I281IatCatA11AY.990.001049
ORF1ab/nsp2281I281LAtcCtc11B.10.000009
ORF1ab/nsp2281I281SaTcaGc11B.10.000009
ORF1ab/nsp2281I281TaTcaCc11B.1.10.000018
ORF1ab/nsp2281I281VAtcGtc11B.1.10.000018
ORF1ab/nsp2281I281IatCatT11B.1.1.1220.045455
ORF1ab/nsp2281I281IatCatT11B.1.1.1370.0125
ORF1ab/nsp2281I281IatCatT11B.1.1.1450.037037
ORF1ab/nsp2281I281IatCatT11B.1.1.1480.008772
ORF1ab/nsp2281I281IatCatT11B.1.1.1580.012195
ORF1ab/nsp2281I281LAtcCtc11B.1.1.1610.003534
ORF1ab/nsp2281I281IatCatT11B.1.1.2070.001182
ORF1ab/nsp2281I281delATC---11B.1.1.2840.000107
ORF1ab/nsp2281I281IatCatT11B.1.1.2990.012195
ORF1ab/nsp2281I281VAtcGtc11B.1.1.3160.000925
ORF1ab/nsp2281I281TaTcaCc11B.1.1.3850.004464
ORF1ab/nsp2281I281IatCatT11B.1.1.3880.045455
ORF1ab/nsp2281I281IatCatT11B.1.1.3970.002252
ORF1ab/nsp2281I281NaTcaAc11B.1.1.3980.003226
ORF1ab/nsp2281I281IatCatT11B.1.1.3980.003226
ORF1ab/nsp2281I281IatCatT11B.1.1.4070.041667
ORF1ab/nsp2281I281IatCatT11B.1.1.4100.037037
ORF1ab/nsp2281I281IatCatT11B.1.1.4220.045455
ORF1ab/nsp2281I281IatCatT11B.1.1.4340.000349
ORF1ab/nsp2281I281IatCatT11B.1.1.440.00241
ORF1ab/nsp2281I281IatCatT11B.1.1.4620.008621
ORF1ab/nsp2281I281VAtcGtc11B.1.1.500.000679
ORF1ab/nsp2281I281IatCatT11B.1.1.5230.001563
ORF1ab/nsp2281I281IatCatT11B.1.1.540.003021
ORF1ab/nsp2281I281XATCTAA11B.1.1.70.000001
ORF1ab/nsp2281I281TaTcaCc11B.1.1.70.000001
ORF1ab/nsp2281I281MatCatG11B.1.1.70.000001
ORF1ab/nsp2281I281KaTCaAA11B.1.1.70.000001
ORF1ab/nsp2281I281DATCGAT11B.1.1.70.000001
ORF1ab/nsp2281I281YATCTAT11B.1.1.70.000001
ORF1ab/nsp2281I281EATCGAA11B.1.1.70.000001
ORF1ab/nsp2281I281IatCatT11B.1.1.890.006061
ORF1ab/nsp2281I281VAtcGtc11B.1.1770.000013
ORF1ab/nsp2281I281TaTcaCc11B.1.177.530.002392
ORF1ab/nsp2281I281IatCatA11B.1.177.730.000566
ORF1ab/nsp2281I281IatCatT11B.1.1790.003759
ORF1ab/nsp2281I281NaTcaAc11B.1.20.000009
ORF1ab/nsp2281I281delATC---11B.1.20.000009
ORF1ab/nsp2281I281VAtcGtc11B.1.2320.000537
ORF1ab/nsp2281I281IatCatT11B.1.2350.002519
ORF1ab/nsp2281I281NaTcaAc11B.1.2410.000812
ORF1ab/nsp2281I281IatCatT11B.1.3200.001245
ORF1ab/nsp2281I281IatCatT11B.1.3380.008621
ORF1ab/nsp2281I281delATC---11B.1.3510.00003
ORF1ab/nsp2281I281VAtcGtc11B.1.351.30.000876
ORF1ab/nsp2281I281NaTcaAc11B.1.351.30.000876
ORF1ab/nsp2281I281TaTcaCc11B.1.3560.001727
ORF1ab/nsp2281I281IatCatT11B.1.3620.001541
ORF1ab/nsp2281I281IatCatT11B.1.3960.000706
ORF1ab/nsp2281I281LAtcCtc11B.1.4280.00102
ORF1ab/nsp2281I281LAtcCtc11B.1.4290.000024
ORF1ab/nsp2281I281IatCatT11B.1.466.20.000391
ORF1ab/nsp2281I281IatCatT11B.1.4760.1
ORF1ab/nsp2281I281IatCatT11B.1.4970.000315
ORF1ab/nsp2281I281delATC---11B.1.5250.000113
ORF1ab/nsp2281I281NaTcaAc11B.1.5260.000024
ORF1ab/nsp2281I281IatCatT11B.1.5610.000397
ORF1ab/nsp2281I281MatCatG11B.1.5610.000397
ORF1ab/nsp2281I281IatCatA11B.1.5670.003333
ORF1ab/nsp2281I281IatCatT11B.1.5960.000087
ORF1ab/nsp2281I281NaTcaAc11B.1.5960.000087
ORF1ab/nsp2281I281MatCatG11B.1.617.20.000004
ORF1ab/nsp2281I281del2ATc--c11B.1.617.20.000004
ORF1ab/nsp2281I281IatCatT11B.1.6200.000946
ORF1ab/nsp2281I281IatCatT11B.1.6370.000073
ORF1ab/nsp2281I281VAtcGtc11B.560.028571
ORF1ab/nsp2281I281IatCatT11C.160.00106
ORF1ab/nsp2281I281IatCatT11C.360.000911
ORF1ab/nsp2281I281IatCatT11C.50.090909
ORF1ab/nsp2281I281IatCatT11P.1.140.000048
ORF1ab/nsp2281I281IatCatT11P.1.150.000232