CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 272

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2272E272KE452KnonsynGaaAaa41641611619-1621
ORF1ab/nsp2272E272GE452GnonsyngAagGa3743730.9973261619-1621
ORF1ab/nsp2272E272GE452GnonsyngAAgGG37410.00267381619-1621
ORF1ab/nsp2272E272AE452AnonsyngAagCa10610611619-1621
ORF1ab/nsp2272E272EE452EsyngaAgaG10510511619-1621
ORF1ab/nsp2272E272delE452deldelGAA---333311619-1621
ORF1ab/nsp2272E272DE452DnonsyngaAgaT33200.6060611619-1621
ORF1ab/nsp2272E272DE452DnonsyngaAgaC33130.3939391619-1621
ORF1ab/nsp2272E272XE452XnonsynGaaTaa870.8751619-1621
ORF1ab/nsp2272E272XE452XnonsynGAaTGa810.1251619-1621
ORF1ab/nsp2272E272VE452VnonsyngAagTa6611619-1621
ORF1ab/nsp2272E272del1E452del1delgAag-a650.8333331619-1621
ORF1ab/nsp2272E272del1E452del1delGaa-aa610.1666671619-1621
ORF1ab/nsp2272E272QE452QnonsynGaaCaa3311619-1621
ORF1ab/nsp2272E272del2E452del2delgAAg--1111619-1621

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2272E272KGaaAaa416416All0.00008
ORF1ab/nsp2272E272GgAagGa373374All0.000071
ORF1ab/nsp2272E272GgAAgGG1374All0
ORF1ab/nsp2272E272KGaaAaa194194AY.440.001181
ORF1ab/nsp2272E272GgAagGa117117AY.30.001164
ORF1ab/nsp2272E272AgAagCa106106All0.00002
ORF1ab/nsp2272E272EgaAgaG105105All0.00002
ORF1ab/nsp2272E272KGaaAaa7373AY.1030.000453
ORF1ab/nsp2272E272KGaaAaa7070B.1.1.70.000063
ORF1ab/nsp2272E272GgAagGa4343B.1.1.10.014048
ORF1ab/nsp2272E272GgAagGa4343B.1.1.70.000038
ORF1ab/nsp2272E272delGAA---3333All0.000006
ORF1ab/nsp2272E272DgaAgaT2033All0.000004
ORF1ab/nsp2272E272DgaAgaC1333All0.000002
ORF1ab/nsp2272E272AgAagCa3030AY.40.000047
ORF1ab/nsp2272E272GgAagGa3030AY.440.000183
ORF1ab/nsp2272E272GgAagGa2828B.10.000256
ORF1ab/nsp2272E272EgaAgaG2626B.1.177.190.037196
ORF1ab/nsp2272E272AgAagCa2626B.1.6210.002301
ORF1ab/nsp2272E272EgaAgaG2121B.1.1.70.000019
ORF1ab/nsp2272E272GgAagGa2121B.1.5760.019039
ORF1ab/nsp2272E272EgaAgaG1818B.1.4270.000909
ORF1ab/nsp2272E272KGaaAaa1616B.1.20.000141
ORF1ab/nsp2272E272AgAagCa1414B.1.1.70.000013
ORF1ab/nsp2272E272KGaaAaa1010AY.40.000016
ORF1ab/nsp2272E272GgAagGa1010B.1.617.20.000038
ORF1ab/nsp2272E272GgAagGa99B.1.160.110.051429
ORF1ab/nsp2272E272EgaAgaG99B.1.2580.000599
ORF1ab/nsp2272E272GgAagGa99B.1.6210.000797
ORF1ab/nsp2272E272XGaaTaa78All0.000001
ORF1ab/nsp2272E272XGAaTGa18All0
ORF1ab/nsp2272E272delGAA---77B.1.1.70.000006
ORF1ab/nsp2272E272DgaAgaT77B.1.5260.000165
ORF1ab/nsp2272E272VgAagTa66All0.000001
ORF1ab/nsp2272E272del1gAag-a56All0.000001
ORF1ab/nsp2272E272del1Gaa-aa16All0
ORF1ab/nsp2272E272GgAagGa66B.1.10.000109
ORF1ab/nsp2272E272KGaaAaa66B.1.617.20.000023
ORF1ab/nsp2272E272GgAagGa55A.300.714286
ORF1ab/nsp2272E272GgAagGa55AY.390.000124
ORF1ab/nsp2272E272DgaAgaC55AY.40.000008
ORF1ab/nsp2272E272DgaAgaT55B.1.1.70.000004
ORF1ab/nsp2272E272AgAagCa55B.1.20.000044
ORF1ab/nsp2272E272GgAagGa55B.1.3510.000149
ORF1ab/nsp2272E272EgaAgaG55B.1.617.20.000019
ORF1ab/nsp2272E272GgAagGa44AY.250.000024
ORF1ab/nsp2272E272EgaAgaG44AY.430.000018
ORF1ab/nsp2272E272KGaaAaa44B.10.000037
ORF1ab/nsp2272E272KGaaAaa44B.1.10.000073
ORF1ab/nsp2272E272delGAA---44B.1.1.330.001684
ORF1ab/nsp2272E272AgAagCa44B.1.1770.000053
ORF1ab/nsp2272E272KGaaAaa44D.20.0003
ORF1ab/nsp2272E272AgAagCa44P.10.000063
ORF1ab/nsp2272E272QGaaCaa33All0.000001
ORF1ab/nsp2272E272EgaAgaG33AY.250.000018
ORF1ab/nsp2272E272GgAagGa33AY.260.000085
ORF1ab/nsp2272E272KGaaAaa33AY.290.000047
ORF1ab/nsp2272E272GgAagGa33AY.330.0002
ORF1ab/nsp2272E272AgAagCa33AY.390.000074
ORF1ab/nsp2272E272GgAagGa33AY.40.000005
ORF1ab/nsp2272E272delGAA---33AY.850.001282
ORF1ab/nsp2272E272XGaaTaa33B.10.000027
ORF1ab/nsp2272E272AgAagCa33B.10.000027
ORF1ab/nsp2272E272delGAA---33B.1.1.3480.002389
ORF1ab/nsp2272E272KGaaAaa33B.1.1770.00004
ORF1ab/nsp2272E272KGaaAaa33B.1.3510.000089
ORF1ab/nsp2272E272AgAagCa33B.1.617.20.000011
ORF1ab/nsp2272E272GgAagGa22AY.1000.000092
ORF1ab/nsp2272E272KGaaAaa22AY.30.00002
ORF1ab/nsp2272E272AgAagCa22AY.3.10.000171
ORF1ab/nsp2272E272GgAagGa22AY.4.40.000818
ORF1ab/nsp2272E272GgAagGa22AY.430.000009
ORF1ab/nsp2272E272KGaaAaa22AY.430.000009
ORF1ab/nsp2272E272EgaAgaG22AY.930.000546
ORF1ab/nsp2272E272del1gAag-a22B.10.000018
ORF1ab/nsp2272E272AgAagCa22B.1.1.2220.000408
ORF1ab/nsp2272E272KGaaAaa22B.1.1.3740.004751
ORF1ab/nsp2272E272XGaaTaa22B.1.1.70.000002
ORF1ab/nsp2272E272DgaAgaT22B.1.1770.000026
ORF1ab/nsp2272E272GgAagGa22B.1.20.000018
ORF1ab/nsp2272E272DgaAgaT22B.1.2580.000133
ORF1ab/nsp2272E272EgaAgaG22B.1.4290.000047
ORF1ab/nsp2272E272GgAagGa22B.1.4290.000047
ORF1ab/nsp2272E272GgAagGa22B.1.5260.000047
ORF1ab/nsp2272E272KGaaAaa22B.1.5260.000047
ORF1ab/nsp2272E272DgaAgaC12B.1.5960.000087
ORF1ab/nsp2272E272DgaAgaT12B.1.5960.000087
ORF1ab/nsp2272E272DgaAgaC22B.1.617.20.000008
ORF1ab/nsp2272E272delGAA---22B.1.617.20.000008
ORF1ab/nsp2272E272XGaaTaa12B.1.617.20.000004
ORF1ab/nsp2272E272XGAaTGa12B.1.617.20.000004
ORF1ab/nsp2272E272del1gAag-a22B.1.6270.00404
ORF1ab/nsp2272E272delGAA---22N.60.014184
ORF1ab/nsp2272E272delGAA---22P.20.000373
ORF1ab/nsp2272E272delGAA---11A0.000387
ORF1ab/nsp2272E272VgAagTa11A0.000387
ORF1ab/nsp2272E272del2gAAg--11A0.000387
ORF1ab/nsp2272E272EgaAgaG11A0.000387
ORF1ab/nsp2272E272GgAagGa11A.20.000662
ORF1ab/nsp2272E272EgaAgaG11AE.80.000489
ORF1ab/nsp2272E272del2gAAg--11All0
ORF1ab/nsp2272E272EgaAgaG11AY.1020.000027
ORF1ab/nsp2272E272KGaaAaa11AY.1020.000027
ORF1ab/nsp2272E272GgAagGa11AY.1030.000006
ORF1ab/nsp2272E272VgAagTa11AY.1030.000006
ORF1ab/nsp2272E272DgaAgaC11AY.1030.000006
ORF1ab/nsp2272E272GgAagGa11AY.1170.000085
ORF1ab/nsp2272E272KGaaAaa11AY.1180.000063
ORF1ab/nsp2272E272EgaAgaG11AY.140.000088
ORF1ab/nsp2272E272AgAagCa11AY.230.00007
ORF1ab/nsp2272E272GgAagGa11AY.240.000431
ORF1ab/nsp2272E272KGaaAaa11AY.250.000006
ORF1ab/nsp2272E272VgAagTa11AY.250.000006
ORF1ab/nsp2272E272DgaAgaC11AY.290.000016
ORF1ab/nsp2272E272delGAA---11AY.290.000016
ORF1ab/nsp2272E272GgAagGa11AY.290.000016
ORF1ab/nsp2272E272AgAagCa11AY.30.00001
ORF1ab/nsp2272E272EgaAgaG11AY.390.000025
ORF1ab/nsp2272E272delGAA---11AY.40.000002
ORF1ab/nsp2272E272EgaAgaG11AY.40.000002
ORF1ab/nsp2272E272GgAagGa11AY.4.20.000022
ORF1ab/nsp2272E272delGAA---11AY.4.50.000107
ORF1ab/nsp2272E272EgaAgaG11AY.4.50.000107
ORF1ab/nsp2272E272AgAagCa11AY.430.000004
ORF1ab/nsp2272E272VgAagTa11AY.430.000004
ORF1ab/nsp2272E272AgAagCa11AY.440.000006
ORF1ab/nsp2272E272del1Gaa-aa11AY.440.000006
ORF1ab/nsp2272E272KGaaAaa11AY.450.000122
ORF1ab/nsp2272E272KGaaAaa11AY.50.000021
ORF1ab/nsp2272E272GgAagGa11AY.540.000095
ORF1ab/nsp2272E272AgAagCa11AY.550.000917
ORF1ab/nsp2272E272GgAagGa11AY.60.000041
ORF1ab/nsp2272E272delGAA---11AY.60.000041
ORF1ab/nsp2272E272AgAagCa11AY.690.000187
ORF1ab/nsp2272E272KGaaAaa11AY.7.10.000113
ORF1ab/nsp2272E272EgaAgaG11AY.750.000056
ORF1ab/nsp2272E272GgAagGa11AY.750.000056
ORF1ab/nsp2272E272GgAagGa11AY.850.000427
ORF1ab/nsp2272E272KGaaAaa11AY.9.20.000037
ORF1ab/nsp2272E272QGaaCaa11AY.98.10.000048
ORF1ab/nsp2272E272AgAagCa11B0.000128
ORF1ab/nsp2272E272EgaAgaG11B.10.000009
ORF1ab/nsp2272E272VgAagTa11B.10.000009
ORF1ab/nsp2272E272DgaAgaC11B.10.000009
ORF1ab/nsp2272E272KGaaAaa11B.1.1.2220.000204
ORF1ab/nsp2272E272KGaaAaa11B.1.1.2320.001815
ORF1ab/nsp2272E272GgAagGa11B.1.1.2840.000107
ORF1ab/nsp2272E272delGAA---11B.1.1.2840.000107
ORF1ab/nsp2272E272KGaaAaa11B.1.1.2890.002083
ORF1ab/nsp2272E272DgaAgaT11B.1.1.3180.000302
ORF1ab/nsp2272E272GgAagGa11B.1.1.3720.000689
ORF1ab/nsp2272E272AgAagCa11B.1.1.3970.002252
ORF1ab/nsp2272E272QGaaCaa11B.1.1.70.000001
ORF1ab/nsp2272E272VgAagTa11B.1.1.70.000001
ORF1ab/nsp2272E272GgAAgGG11B.1.110.30.000718
ORF1ab/nsp2272E272GgAagGa11B.1.1600.000031
ORF1ab/nsp2272E272KGaaAaa11B.1.1600.000031
ORF1ab/nsp2272E272EgaAgaG11B.1.1600.000031
ORF1ab/nsp2272E272DgaAgaC11B.1.1600.000031
ORF1ab/nsp2272E272EgaAgaG11B.1.177.440.000519
ORF1ab/nsp2272E272KGaaAaa11B.1.177.570.000281
ORF1ab/nsp2272E272EgaAgaG11B.1.177.580.001332
ORF1ab/nsp2272E272GgAagGa11B.1.177.600.000218
ORF1ab/nsp2272E272delGAA---11B.1.177.870.000728
ORF1ab/nsp2272E272EgaAgaG11B.1.20.000009
ORF1ab/nsp2272E272del1gAag-a11B.1.20.000009
ORF1ab/nsp2272E272delGAA---11B.1.20.000009
ORF1ab/nsp2272E272KGaaAaa11B.1.2390.001221
ORF1ab/nsp2272E272GgAagGa11B.1.2400.000216
ORF1ab/nsp2272E272delGAA---11B.1.3510.00003
ORF1ab/nsp2272E272KGaaAaa11B.1.36.100.004785
ORF1ab/nsp2272E272KGaaAaa11B.1.3990.001934
ORF1ab/nsp2272E272EgaAgaG11B.1.4090.000781
ORF1ab/nsp2272E272DgaAgaT11B.1.4290.000024
ORF1ab/nsp2272E272AgAagCa11B.1.4290.000024
ORF1ab/nsp2272E272GgAagGa11B.1.466.20.000391
ORF1ab/nsp2272E272DgaAgaT11B.1.4870.019608
ORF1ab/nsp2272E272EgaAgaG11B.1.5240.001406
ORF1ab/nsp2272E272AgAagCa11B.1.5260.000024
ORF1ab/nsp2272E272KGaaAaa11B.1.5820.000491
ORF1ab/nsp2272E272KGaaAaa11B.1.930.000934
ORF1ab/nsp2272E272KGaaAaa11B.40.002208
ORF1ab/nsp2272E272XGaaTaa11B.60.00091
ORF1ab/nsp2272E272GgAagGa11C.360.000911
ORF1ab/nsp2272E272DgaAgaC11P.10.000016
ORF1ab/nsp2272E272delGAA---11Q.10.000126
ORF1ab/nsp2272E272QGaaCaa11Q.80.000165