CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 27

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp227R27CR207CnonsynCgtTgt28556285561884-886
ORF1ab/nsp227R27HR207HnonsyncGtcAt4554551884-886
ORF1ab/nsp227R27RR207RsyncgTcgC3573450.966387884-886
ORF1ab/nsp227R27RR207RsyncgTcgG35770.0196078884-886
ORF1ab/nsp227R27RR207RsyncgTcgA35750.0140056884-886
ORF1ab/nsp227R27LR207LnonsyncGtcTt2452451884-886
ORF1ab/nsp227R27SR207SnonsynCgtAgt58581884-886
ORF1ab/nsp227R27delR207deldelCGT---49491884-886
ORF1ab/nsp227R27GR207GnonsynCgtGgt24241884-886
ORF1ab/nsp227R27PR207PnonsyncGtcCt441884-886
ORF1ab/nsp227R27del1R207del1delcGtc-t320.666667884-886
ORF1ab/nsp227R27del1R207del1delcgTcg-310.333333884-886
ORF1ab/nsp227R27del2R207del2delcGTc--111884-886

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp227R27CCgtTgt2855628556All0.005462
ORF1ab/nsp227R27CCgtTgt43494349B.10.039835
ORF1ab/nsp227R27CCgtTgt40544054AY.1140.936908
ORF1ab/nsp227R27CCgtTgt30183018B.1.617.20.011364
ORF1ab/nsp227R27CCgtTgt26242624B.1.1.70.002349
ORF1ab/nsp227R27CCgtTgt19431943B.1.10.035248
ORF1ab/nsp227R27CCgtTgt17371737AY.430.007696
ORF1ab/nsp227R27CCgtTgt14011401B.1.1600.043694
ORF1ab/nsp227R27CCgtTgt11351135AY.500.907274
ORF1ab/nsp227R27CCgtTgt485485AY.440.002952
ORF1ab/nsp227R27HcGtcAt455455All0.000087
ORF1ab/nsp227R27CCgtTgt380380AY.40.000591
ORF1ab/nsp227R27RcgTcgC345357All0.000066
ORF1ab/nsp227R27RcgTcgG7357All0.000001
ORF1ab/nsp227R27RcgTcgA5357All0.000001
ORF1ab/nsp227R27LcGtcTt245245All0.000047
ORF1ab/nsp227R27CCgtTgt230230AY.1160.065959
ORF1ab/nsp227R27CCgtTgt208208B.1.20.001832
ORF1ab/nsp227R27CCgtTgt177177AY.4.50.019026
ORF1ab/nsp227R27CCgtTgt177177AY.460.018422
ORF1ab/nsp227R27CCgtTgt177177AY.46.20.112452
ORF1ab/nsp227R27CCgtTgt177177B.1.3510.005262
ORF1ab/nsp227R27CCgtTgt171171P.10.002694
ORF1ab/nsp227R27CCgtTgt170170P.1.10.054003
ORF1ab/nsp227R27CCgtTgt158158AY.420.006356
ORF1ab/nsp227R27CCgtTgt157157AY.680.042978
ORF1ab/nsp227R27CCgtTgt150150AY.60.006169
ORF1ab/nsp227R27CCgtTgt147147AY.1020.003898
ORF1ab/nsp227R27CCgtTgt139139AY.98.10.006732
ORF1ab/nsp227R27CCgtTgt133133B.40.293598
ORF1ab/nsp227R27CCgtTgt131131AY.390.003237
ORF1ab/nsp227R27CCgtTgt129129B.1.6190.112369
ORF1ab/nsp227R27CCgtTgt127127B.1.177.210.009712
ORF1ab/nsp227R27CCgtTgt123123B.1.3750.10082
ORF1ab/nsp227R27CCgtTgt119119AY.1030.000739
ORF1ab/nsp227R27CCgtTgt118118AY.7.20.065996
ORF1ab/nsp227R27CCgtTgt116116AY.46.60.008376
ORF1ab/nsp227R27CCgtTgt115115AY.610.012049
ORF1ab/nsp227R27CCgtTgt106106AY.330.007078
ORF1ab/nsp227R27CCgtTgt104104AY.250.000626
ORF1ab/nsp227R27CCgtTgt9898B.4.70.989899
ORF1ab/nsp227R27HcGtcAt9292AY.1020.002439
ORF1ab/nsp227R27CCgtTgt9292AY.690.017174
ORF1ab/nsp227R27HcGtcAt9090B.1.2580.005989
ORF1ab/nsp227R27CCgtTgt8989B.1.5540.39207
ORF1ab/nsp227R27CCgtTgt8888AY.710.041805
ORF1ab/nsp227R27CCgtTgt8787AY.46.10.089322
ORF1ab/nsp227R27CCgtTgt8686AY.5.40.023796
ORF1ab/nsp227R27RcgTcgC8285AY.1030.000509
ORF1ab/nsp227R27RcgTcgG385AY.1030.000019
ORF1ab/nsp227R27CCgtTgt8484B.1.1770.001106
ORF1ab/nsp227R27CCgtTgt8282AY.450.009978
ORF1ab/nsp227R27CCgtTgt8080AY.650.042644
ORF1ab/nsp227R27RcgTcgC7778B.1.1.70.000069
ORF1ab/nsp227R27RcgTcgA178B.1.1.70.000001
ORF1ab/nsp227R27CCgtTgt7777B.1.5250.008713
ORF1ab/nsp227R27CCgtTgt7676AY.920.021833
ORF1ab/nsp227R27CCgtTgt7373AY.9.20.002681
ORF1ab/nsp227R27CCgtTgt7272AY.340.006981
ORF1ab/nsp227R27CCgtTgt6868AY.16.10.031955
ORF1ab/nsp227R27CCgtTgt6767B.1.1.2050.249071
ORF1ab/nsp227R27LcGtcTt6666B.1.1.70.000059
ORF1ab/nsp227R27CCgtTgt6565AY.50.001342
ORF1ab/nsp227R27SCgtAgt5858All0.000011
ORF1ab/nsp227R27LcGtcTt5757AY.40.000089
ORF1ab/nsp227R27CCgtTgt5757AY.980.004503
ORF1ab/nsp227R27CCgtTgt5656AY.780.086287
ORF1ab/nsp227R27RcgTcgC5656B.1.617.20.000211
ORF1ab/nsp227R27CCgtTgt5555AY.470.001711
ORF1ab/nsp227R27CCgtTgt5252AY.1210.007037
ORF1ab/nsp227R27CCgtTgt5252AY.130.008371
ORF1ab/nsp227R27CCgtTgt5151C.36.30.028928
ORF1ab/nsp227R27CCgtTgt5050AY.30.000497
ORF1ab/nsp227R27delCGT---4949All0.000009
ORF1ab/nsp227R27CCgtTgt4949AY.260.001387
ORF1ab/nsp227R27CCgtTgt4848P.1.120.023233
ORF1ab/nsp227R27CCgtTgt4747AY.75.10.008475
ORF1ab/nsp227R27CCgtTgt4747B.1.177.600.010266
ORF1ab/nsp227R27CCgtTgt4646AY.70.009016
ORF1ab/nsp227R27CCgtTgt4545AY.1060.01507
ORF1ab/nsp227R27HcGtcAt4545B.1.1.70.00004
ORF1ab/nsp227R27CCgtTgt4343B.1.2210.003054
ORF1ab/nsp227R27CCgtTgt4141B.1.1700.176724
ORF1ab/nsp227R27CCgtTgt3838AY.200.001477
ORF1ab/nsp227R27CCgtTgt3737B.1.4290.000871
ORF1ab/nsp227R27RcgTcgC3636AY.40.000056
ORF1ab/nsp227R27CCgtTgt3535AY.1170.002958
ORF1ab/nsp227R27CCgtTgt3333B.1.2580.002196
ORF1ab/nsp227R27CCgtTgt3131AY.4.20.000672
ORF1ab/nsp227R27SCgtAgt3030AY.40.000047
ORF1ab/nsp227R27CCgtTgt3030AY.9.10.002512
ORF1ab/nsp227R27CCgtTgt2828AY.1130.003987
ORF1ab/nsp227R27CCgtTgt2727B.4.10.509434
ORF1ab/nsp227R27HcGtcAt2626AY.3.10.002217
ORF1ab/nsp227R27CCgtTgt2626AY.540.002479
ORF1ab/nsp227R27CCgtTgt2626B.1.360.003793
ORF1ab/nsp227R27HcGtcAt2525AY.1190.000883
ORF1ab/nsp227R27CCgtTgt2525B.1.1.1890.037821
ORF1ab/nsp227R27CCgtTgt2525B.1.4250.07485
ORF1ab/nsp227R27CCgtTgt2525B.1.6090.011985
ORF1ab/nsp227R27GCgtGgt2424All0.000005
ORF1ab/nsp227R27CCgtTgt2424AY.230.001674
ORF1ab/nsp227R27CCgtTgt2424B.1.1.10.007841
ORF1ab/nsp227R27CCgtTgt2424B.1.1.4200.024145
ORF1ab/nsp227R27CCgtTgt2323B.1.438.10.002467
ORF1ab/nsp227R27CCgtTgt2222AY.530.006325
ORF1ab/nsp227R27CCgtTgt2222AY.700.004587
ORF1ab/nsp227R27CCgtTgt2222B.1.5300.157143
ORF1ab/nsp227R27CCgtTgt2121AY.1200.000781
ORF1ab/nsp227R27CCgtTgt2121B0.002684
ORF1ab/nsp227R27CCgtTgt2121B.1.1.4340.00732
ORF1ab/nsp227R27LcGtcTt2121B.1.2210.001492
ORF1ab/nsp227R27CCgtTgt2020B.1.1.3720.013774
ORF1ab/nsp227R27CCgtTgt2020B.1.3950.140845
ORF1ab/nsp227R27CCgtTgt1919AY.1000.000874
ORF1ab/nsp227R27CCgtTgt1919B.1.177.860.003486
ORF1ab/nsp227R27CCgtTgt1818AY.210.034156
ORF1ab/nsp227R27CCgtTgt1818B.1.6360.120805
ORF1ab/nsp227R27CCgtTgt1717AY.290.000268
ORF1ab/nsp227R27CCgtTgt1717B.1.1.3180.00513
ORF1ab/nsp227R27HcGtcAt1717B.1.617.20.000064
ORF1ab/nsp227R27CCgtTgt1717P.1.160.00636
ORF1ab/nsp227R27CCgtTgt1515B.1.36.10.017104
ORF1ab/nsp227R27CCgtTgt1515B.1.4690.054152
ORF1ab/nsp227R27CCgtTgt1414AY.1190.000494
ORF1ab/nsp227R27CCgtTgt1414AY.39.10.000555
ORF1ab/nsp227R27HcGtcAt1414AY.40.000022
ORF1ab/nsp227R27CCgtTgt1414Q.40.006367
ORF1ab/nsp227R27CCgtTgt1313B.1.2340.001715
ORF1ab/nsp227R27CCgtTgt1313B.1.2430.000905
ORF1ab/nsp227R27CCgtTgt1313P.1.140.000621
ORF1ab/nsp227R27CCgtTgt1212AY.3.10.001023
ORF1ab/nsp227R27HcGtcAt1212AY.330.000801
ORF1ab/nsp227R27HcGtcAt1212AY.46.40.001974
ORF1ab/nsp227R27CCgtTgt1212AY.91.10.04878
ORF1ab/nsp227R27CCgtTgt1212B.1.1.3060.005261
ORF1ab/nsp227R27CCgtTgt1212B.1.2840.157895
ORF1ab/nsp227R27CCgtTgt1212B.1.3690.003423
ORF1ab/nsp227R27CCgtTgt1212Q.10.001516
ORF1ab/nsp227R27CCgtTgt1111AY.270.000712
ORF1ab/nsp227R27LcGtcTt1111AY.30.000109
ORF1ab/nsp227R27CCgtTgt1111AY.46.40.00181
ORF1ab/nsp227R27CCgtTgt1111AY.950.008371
ORF1ab/nsp227R27CCgtTgt1111B.1.1.1610.038869
ORF1ab/nsp227R27CCgtTgt1111B.1.1.2220.002244
ORF1ab/nsp227R27CCgtTgt1111B.1.1.280.003424
ORF1ab/nsp227R27CCgtTgt1111B.1.1.2820.127907
ORF1ab/nsp227R27CCgtTgt1111B.1.1.5190.000437
ORF1ab/nsp227R27HcGtcAt1111B.1.20.000097
ORF1ab/nsp227R27CCgtTgt1010AY.100.005299
ORF1ab/nsp227R27CCgtTgt1010AY.370.003161
ORF1ab/nsp227R27CCgtTgt1010AY.380.004993
ORF1ab/nsp227R27HcGtcAt1010AY.440.000061
ORF1ab/nsp227R27CCgtTgt1010AY.490.031949
ORF1ab/nsp227R27CCgtTgt1010AY.5.30.003374
ORF1ab/nsp227R27CCgtTgt1010AY.580.009074
ORF1ab/nsp227R27LcGtcTt1010B.1.10.000181
ORF1ab/nsp227R27CCgtTgt1010B.1.1.370.001929
ORF1ab/nsp227R27CCgtTgt1010B.1.5260.000235
ORF1ab/nsp227R27CCgtTgt1010B.1.5960.000871
ORF1ab/nsp227R27CCgtTgt99AY.620.003922
ORF1ab/nsp227R27CCgtTgt99AY.670.004178
ORF1ab/nsp227R27CCgtTgt99AY.730.005988
ORF1ab/nsp227R27CCgtTgt99B.1.1.4090.025496
ORF1ab/nsp227R27CCgtTgt99B.1.2180.046392
ORF1ab/nsp227R27CCgtTgt99B.1.351.30.007888
ORF1ab/nsp227R27CCgtTgt99B.1.3560.015544
ORF1ab/nsp227R27LcGtcTt99B.1.4290.000212
ORF1ab/nsp227R27GCgtGgt99C.70.310345
ORF1ab/nsp227R27HcGtcAt88AY.1030.00005
ORF1ab/nsp227R27CCgtTgt88AY.360.001186
ORF1ab/nsp227R27CCgtTgt88AY.510.007273
ORF1ab/nsp227R27CCgtTgt88AY.840.0035
ORF1ab/nsp227R27CCgtTgt88B.1.177.270.075472
ORF1ab/nsp227R27CCgtTgt88B.1.177.750.008325
ORF1ab/nsp227R27HcGtcAt88B.1.258.240.086022
ORF1ab/nsp227R27CCgtTgt88B.1.3960.005646
ORF1ab/nsp227R27CCgtTgt88B.1.3990.015474
ORF1ab/nsp227R27CCgtTgt88B.1.5610.003176
ORF1ab/nsp227R27LcGtcTt88B.1.617.20.00003
ORF1ab/nsp227R27CCgtTgt88C.350.006192
ORF1ab/nsp227R27RcgTcgC88P.10.000126
ORF1ab/nsp227R27CCgtTgt88P.1.170.001294
ORF1ab/nsp227R27CCgtTgt88P.1.70.002554
ORF1ab/nsp227R27CCgtTgt77AY.1050.004502
ORF1ab/nsp227R27CCgtTgt77AY.410.002058
ORF1ab/nsp227R27CCgtTgt77AY.770.007892
ORF1ab/nsp227R27RcgTcgC67B.1.10.000109
ORF1ab/nsp227R27RcgTcgA17B.1.10.000018
ORF1ab/nsp227R27CCgtTgt77B.1.1.4190.051852
ORF1ab/nsp227R27CCgtTgt77B.1.2140.025641
ORF1ab/nsp227R27CCgtTgt77B.1.2760.118644
ORF1ab/nsp227R27CCgtTgt77B.1.466.20.002739
ORF1ab/nsp227R27SCgtAgt77B.1.5260.000165
ORF1ab/nsp227R27CCgtTgt77C.370.000812
ORF1ab/nsp227R27CCgtTgt77P.20.001306
ORF1ab/nsp227R27RcgTcgC66AY.1020.000159
ORF1ab/nsp227R27CCgtTgt66AY.240.002586
ORF1ab/nsp227R27GCgtGgt66AY.430.000027
ORF1ab/nsp227R27RcgTcgC66AY.440.000037
ORF1ab/nsp227R27CCgtTgt66AY.480.002791
ORF1ab/nsp227R27CCgtTgt66AY.870.004996
ORF1ab/nsp227R27CCgtTgt66AY.880.005305
ORF1ab/nsp227R27CCgtTgt66B.1.1.2140.000333
ORF1ab/nsp227R27CCgtTgt66B.1.1.5210.032086
ORF1ab/nsp227R27CCgtTgt66B.1.1460.025424
ORF1ab/nsp227R27CCgtTgt66B.1.177.620.007151
ORF1ab/nsp227R27CCgtTgt66B.1.2100.012793
ORF1ab/nsp227R27CCgtTgt66B.1.2400.001293
ORF1ab/nsp227R27CCgtTgt66B.1.36.100.028708
ORF1ab/nsp227R27CCgtTgt66B.1.4270.000303
ORF1ab/nsp227R27CCgtTgt66B.1.5240.008439
ORF1ab/nsp227R27CCgtTgt55A.280.013228
ORF1ab/nsp227R27LcGtcTt55AY.1020.000133
ORF1ab/nsp227R27HcGtcAt55AY.30.00005
ORF1ab/nsp227R27RcgTcgC45AY.390.000099
ORF1ab/nsp227R27RcgTcgG15AY.390.000025
ORF1ab/nsp227R27delCGT---55AY.40.000008
ORF1ab/nsp227R27RcgTcgC55AY.4.20.000108
ORF1ab/nsp227R27HcGtcAt55AY.430.000022
ORF1ab/nsp227R27RcgTcgC35AY.450.000365
ORF1ab/nsp227R27RcgTcgA25AY.450.000243
ORF1ab/nsp227R27delCGT---55B.1.1.330.002104
ORF1ab/nsp227R27CCgtTgt55B.1.1.5250.027322
ORF1ab/nsp227R27CCgtTgt55B.1.177.440.002595
ORF1ab/nsp227R27RcgTcgC55B.1.177.870.003639
ORF1ab/nsp227R27CCgtTgt55B.1.351.20.001513
ORF1ab/nsp227R27CCgtTgt55B.1.4000.002145
ORF1ab/nsp227R27CCgtTgt55B.1.4380.03268
ORF1ab/nsp227R27CCgtTgt55B.1.6210.000443
ORF1ab/nsp227R27CCgtTgt55B.1.6230.002682
ORF1ab/nsp227R27CCgtTgt55B.1.6370.000365
ORF1ab/nsp227R27CCgtTgt55D.20.000375
ORF1ab/nsp227R27PcGtcCt44All0.000001
ORF1ab/nsp227R27RcgTcgC44AY.1000.000184
ORF1ab/nsp227R27LcGtcTt44AY.1030.000025
ORF1ab/nsp227R27CCgtTgt44AY.1080.00441
ORF1ab/nsp227R27RcgTcgC44AY.250.000024
ORF1ab/nsp227R27CCgtTgt44AY.29.10.000882
ORF1ab/nsp227R27HcGtcAt44AY.4.20.000087
ORF1ab/nsp227R27HcGtcAt44AY.410.001176
ORF1ab/nsp227R27CCgtTgt44AY.740.000463
ORF1ab/nsp227R27CCgtTgt44AY.90.00027
ORF1ab/nsp227R27CCgtTgt44B.1.1.3170.001647
ORF1ab/nsp227R27delCGT---44B.1.1.3480.003185
ORF1ab/nsp227R27delCGT---44B.1.1.70.000004
ORF1ab/nsp227R27CCgtTgt44B.1.1650.047619
ORF1ab/nsp227R27CCgtTgt44B.1.177.330.006579
ORF1ab/nsp227R27CCgtTgt44B.1.177.40.000844
ORF1ab/nsp227R27CCgtTgt44B.1.177.730.002265
ORF1ab/nsp227R27CCgtTgt44B.1.177.810.000757
ORF1ab/nsp227R27CCgtTgt44B.1.258.170.000416
ORF1ab/nsp227R27CCgtTgt44B.1.258.240.043011
ORF1ab/nsp227R27CCgtTgt44B.1.3200.004981
ORF1ab/nsp227R27CCgtTgt44B.1.3490.002859
ORF1ab/nsp227R27SCgtAgt44B.1.36.290.002069
ORF1ab/nsp227R27CCgtTgt44B.1.6200.003784
ORF1ab/nsp227R27CCgtTgt44B.1.6280.001409
ORF1ab/nsp227R27CCgtTgt44Q.20.002454
ORF1ab/nsp227R27CCgtTgt33A.2.50.001497
ORF1ab/nsp227R27CCgtTgt33A.2.5.20.004717
ORF1ab/nsp227R27del1cGtc-t23All0
ORF1ab/nsp227R27del1cgTcg-13All0
ORF1ab/nsp227R27CCgtTgt33AY.10.001187
ORF1ab/nsp227R27HcGtcAt33AY.1060.001005
ORF1ab/nsp227R27CCgtTgt33AY.1180.000188
ORF1ab/nsp227R27CCgtTgt33AY.120.10.000963
ORF1ab/nsp227R27CCgtTgt33AY.120.2.10.001495
ORF1ab/nsp227R27RcgTcgC33AY.290.000047
ORF1ab/nsp227R27CCgtTgt33AY.320.001597
ORF1ab/nsp227R27HcGtcAt33AY.39.10.000119
ORF1ab/nsp227R27HcGtcAt33AY.460.000312
ORF1ab/nsp227R27CCgtTgt33AY.46.50.000595
ORF1ab/nsp227R27RcgTcgC33AY.640.001786
ORF1ab/nsp227R27CCgtTgt33AY.660.003209
ORF1ab/nsp227R27HcGtcAt33AY.700.000626
ORF1ab/nsp227R27CCgtTgt33AY.750.000168
ORF1ab/nsp227R27LcGtcTt33B.10.000027
ORF1ab/nsp227R27HcGtcAt33B.10.000027
ORF1ab/nsp227R27RcgTcgC23B.10.000018
ORF1ab/nsp227R27RcgTcgG13B.10.000009
ORF1ab/nsp227R27HcGtcAt33B.1.10.000054
ORF1ab/nsp227R27CCgtTgt33B.1.1.100.003344
ORF1ab/nsp227R27CCgtTgt33B.1.1.1860.010309
ORF1ab/nsp227R27CCgtTgt33B.1.1.2200.005576
ORF1ab/nsp227R27CCgtTgt33B.1.1.2320.005445
ORF1ab/nsp227R27CCgtTgt33B.1.1.2770.002276
ORF1ab/nsp227R27CCgtTgt33B.1.1.2940.003797
ORF1ab/nsp227R27CCgtTgt33B.1.1.3050.011583
ORF1ab/nsp227R27CCgtTgt33B.1.1.4640.004418
ORF1ab/nsp227R27HcGtcAt33B.1.1.5190.000119
ORF1ab/nsp227R27SCgtAgt33B.1.1.70.000003
ORF1ab/nsp227R27CCgtTgt33B.1.1310.026316
ORF1ab/nsp227R27LcGtcTt33B.1.1600.000094
ORF1ab/nsp227R27CCgtTgt33B.1.160.160.002788
ORF1ab/nsp227R27HcGtcAt33B.1.1770.00004
ORF1ab/nsp227R27CCgtTgt33B.1.177.530.007177
ORF1ab/nsp227R27CCgtTgt33B.1.177.830.004444
ORF1ab/nsp227R27CCgtTgt33B.1.214.20.001799
ORF1ab/nsp227R27CCgtTgt33B.1.3110.000824
ORF1ab/nsp227R27CCgtTgt33B.1.4040.003906
ORF1ab/nsp227R27CCgtTgt33B.1.4170.085714
ORF1ab/nsp227R27CCgtTgt33B.1.4530.009709
ORF1ab/nsp227R27CCgtTgt33B.1.4700.004213
ORF1ab/nsp227R27CCgtTgt33B.1.5750.00091
ORF1ab/nsp227R27CCgtTgt33B.1.5760.00272
ORF1ab/nsp227R27CCgtTgt33B.1.5900.013636
ORF1ab/nsp227R27CCgtTgt33B.1.595.30.078947
ORF1ab/nsp227R27HcGtcAt33B.1.5960.000261
ORF1ab/nsp227R27CCgtTgt33B.1.617.10.000387
ORF1ab/nsp227R27delCGT---33B.1.617.20.000011
ORF1ab/nsp227R27CCgtTgt33P.1.100.000808
ORF1ab/nsp227R27LcGtcTt33P.1.150.000697
ORF1ab/nsp227R27CCgtTgt33R.10.00027
ORF1ab/nsp227R27LcGtcTt33R.10.00027
ORF1ab/nsp227R27CCgtTgt22AD.20.000438
ORF1ab/nsp227R27GCgtGgt22AY.1080.002205
ORF1ab/nsp227R27CCgtTgt22AY.1090.001479
ORF1ab/nsp227R27CCgtTgt22AY.1100.000225
ORF1ab/nsp227R27CCgtTgt22AY.120.000632
ORF1ab/nsp227R27CCgtTgt22AY.190.002281
ORF1ab/nsp227R27HcGtcAt22AY.250.000012
ORF1ab/nsp227R27CCgtTgt22AY.300.000791
ORF1ab/nsp227R27RcgTcgC22AY.330.000134
ORF1ab/nsp227R27HcGtcAt22AY.390.000049
ORF1ab/nsp227R27SCgtAgt22AY.4.20.000043
ORF1ab/nsp227R27LcGtcTt22AY.4.20.000043
ORF1ab/nsp227R27RcgTcgC22AY.430.000009
ORF1ab/nsp227R27LcGtcTt22AY.440.000012
ORF1ab/nsp227R27RcgTcgC22AY.460.000208
ORF1ab/nsp227R27RcgTcgC22AY.5.30.000675
ORF1ab/nsp227R27CCgtTgt22AY.520.001629
ORF1ab/nsp227R27RcgTcgC22AY.750.000112
ORF1ab/nsp227R27HcGtcAt22AY.880.001768
ORF1ab/nsp227R27delCGT---22AY.9.20.000073
ORF1ab/nsp227R27CCgtTgt22AY.910.001461
ORF1ab/nsp227R27RcgTcgC22AY.920.000575
ORF1ab/nsp227R27CCgtTgt22AY.940.000885
ORF1ab/nsp227R27CCgtTgt22AY.970.003401
ORF1ab/nsp227R27CCgtTgt22AY.990.002099
ORF1ab/nsp227R27CCgtTgt22AY.99.20.000184
ORF1ab/nsp227R27delCGT---22B.10.000018
ORF1ab/nsp227R27SCgtAgt22B.10.000018
ORF1ab/nsp227R27del1cGtc-t12B.10.000009
ORF1ab/nsp227R27del1cgTcg-12B.10.000009
ORF1ab/nsp227R27CCgtTgt22B.1.1.1570.001826
ORF1ab/nsp227R27CCgtTgt22B.1.1.1710.007353
ORF1ab/nsp227R27CCgtTgt22B.1.1.2160.001781
ORF1ab/nsp227R27CCgtTgt22B.1.1.2180.015385
ORF1ab/nsp227R27CCgtTgt22B.1.1.2430.008163
ORF1ab/nsp227R27CCgtTgt22B.1.1.250.001137
ORF1ab/nsp227R27LcGtcTt22B.1.1.280.000622
ORF1ab/nsp227R27CCgtTgt22B.1.1.2800.006173
ORF1ab/nsp227R27CCgtTgt22B.1.1.3580.068966
ORF1ab/nsp227R27CCgtTgt22B.1.1.3690.000892
ORF1ab/nsp227R27CCgtTgt22B.1.1.3700.025316
ORF1ab/nsp227R27CCgtTgt22B.1.1.4130.013793
ORF1ab/nsp227R27LcGtcTt22B.1.1.4160.00181
ORF1ab/nsp227R27CCgtTgt22B.1.1.5230.003125
ORF1ab/nsp227R27PcGtcCt22B.1.1.70.000002
ORF1ab/nsp227R27CCgtTgt22B.1.1.990.047619
ORF1ab/nsp227R27CCgtTgt22B.1.177.120.000303
ORF1ab/nsp227R27CCgtTgt22B.1.177.510.009132
ORF1ab/nsp227R27CCgtTgt22B.1.177.520.003515
ORF1ab/nsp227R27CCgtTgt22B.1.177.70.00033
ORF1ab/nsp227R27CCgtTgt22B.1.177.770.001452
ORF1ab/nsp227R27LcGtcTt22B.1.2100.004264
ORF1ab/nsp227R27CCgtTgt22B.1.258.200.031746
ORF1ab/nsp227R27CCgtTgt22B.1.3360.004878
ORF1ab/nsp227R27HcGtcAt22B.1.360.000292
ORF1ab/nsp227R27CCgtTgt22B.1.36.70.008
ORF1ab/nsp227R27CCgtTgt22B.1.3620.003082
ORF1ab/nsp227R27CCgtTgt22B.1.3890.002004
ORF1ab/nsp227R27HcGtcAt22B.1.3960.001411
ORF1ab/nsp227R27CCgtTgt22B.1.4160.002538
ORF1ab/nsp227R27CCgtTgt22B.1.4330.00639
ORF1ab/nsp227R27CCgtTgt22B.1.4620.014493
ORF1ab/nsp227R27RcgTcgC22B.1.466.20.000782
ORF1ab/nsp227R27CCgtTgt22B.1.5230.004902
ORF1ab/nsp227R27HcGtcAt22B.1.5400.019417
ORF1ab/nsp227R27RcgTcgC22B.1.5750.000607
ORF1ab/nsp227R27CCgtTgt22B.1.5770.001375
ORF1ab/nsp227R27LcGtcTt22B.1.5860.021978
ORF1ab/nsp227R27CCgtTgt22C.360.001821
ORF1ab/nsp227R27CCgtTgt22C.37.10.005236
ORF1ab/nsp227R27CCgtTgt22C.380.016129
ORF1ab/nsp227R27LcGtcTt22D.20.00015
ORF1ab/nsp227R27delCGT---22N.40.008511
ORF1ab/nsp227R27delCGT---22N.60.014184
ORF1ab/nsp227R27HcGtcAt22P.10.000032
ORF1ab/nsp227R27CCgtTgt22P.1.10.10.01626
ORF1ab/nsp227R27CCgtTgt22P.1.20.002312
ORF1ab/nsp227R27delCGT---22P.20.000373
ORF1ab/nsp227R27CCgtTgt22Q.30.00029
ORF1ab/nsp227R27CCgtTgt22Q.80.00033
ORF1ab/nsp227R27delCGT---11A.2.20.001689
ORF1ab/nsp227R27CCgtTgt11A.2.20.001689
ORF1ab/nsp227R27LcGtcTt11A.210.00277
ORF1ab/nsp227R27HcGtcAt11A.23.10.000704
ORF1ab/nsp227R27CCgtTgt11A.23.10.000704
ORF1ab/nsp227R27LcGtcTt11A.23.10.000704
ORF1ab/nsp227R27del2cGTc--11All0
ORF1ab/nsp227R27CCgtTgt11AS.20.015625
ORF1ab/nsp227R27CCgtTgt11AT.10.005128
ORF1ab/nsp227R27RcgTcgG11AY.10.000396
ORF1ab/nsp227R27RcgTcgC11AY.100.00053
ORF1ab/nsp227R27HcGtcAt11AY.1000.000046
ORF1ab/nsp227R27CCgtTgt11AY.1010.00049
ORF1ab/nsp227R27delCGT---11AY.1020.000027
ORF1ab/nsp227R27SCgtAgt11AY.1030.000006
ORF1ab/nsp227R27CCgtTgt11AY.1040.001984
ORF1ab/nsp227R27CCgtTgt11AY.1070.000466
ORF1ab/nsp227R27CCgtTgt11AY.1110.000183
ORF1ab/nsp227R27delCGT---11AY.1110.000183
ORF1ab/nsp227R27HcGtcAt11AY.1130.000142
ORF1ab/nsp227R27SCgtAgt11AY.1130.000142
ORF1ab/nsp227R27CCgtTgt11AY.116.10.000311
ORF1ab/nsp227R27GCgtGgt11AY.1190.000035
ORF1ab/nsp227R27HcGtcAt11AY.1200.000037
ORF1ab/nsp227R27RcgTcgC11AY.1200.000037
ORF1ab/nsp227R27CCgtTgt11AY.160.00038
ORF1ab/nsp227R27RcgTcgC11AY.200.000039
ORF1ab/nsp227R27RcgTcgC11AY.230.00007
ORF1ab/nsp227R27delCGT---11AY.250.000006
ORF1ab/nsp227R27SCgtAgt11AY.250.000006
ORF1ab/nsp227R27HcGtcAt11AY.260.000028
ORF1ab/nsp227R27RcgTcgC11AY.260.000028
ORF1ab/nsp227R27HcGtcAt11AY.290.000016
ORF1ab/nsp227R27LcGtcTt11AY.290.000016
ORF1ab/nsp227R27HcGtcAt11AY.300.000396
ORF1ab/nsp227R27RcgTcgC11AY.320.000532
ORF1ab/nsp227R27LcGtcTt11AY.330.000067
ORF1ab/nsp227R27CCgtTgt11AY.350.000233
ORF1ab/nsp227R27LcGtcTt11AY.360.000148
ORF1ab/nsp227R27RcgTcgC11AY.360.000148
ORF1ab/nsp227R27LcGtcTt11AY.390.000025
ORF1ab/nsp227R27CCgtTgt11AY.39.1.10.000725
ORF1ab/nsp227R27PcGtcCt11AY.40.000002
ORF1ab/nsp227R27GCgtGgt11AY.40.000002
ORF1ab/nsp227R27CCgtTgt11AY.4.2.10.000149
ORF1ab/nsp227R27HcGtcAt11AY.4.2.10.000149
ORF1ab/nsp227R27CCgtTgt11AY.400.000964
ORF1ab/nsp227R27LcGtcTt11AY.430.000004
ORF1ab/nsp227R27SCgtAgt11AY.440.000006
ORF1ab/nsp227R27HcGtcAt11AY.46.60.000072
ORF1ab/nsp227R27HcGtcAt11AY.470.000031
ORF1ab/nsp227R27LcGtcTt11AY.470.000031
ORF1ab/nsp227R27LcGtcTt11AY.50.000021
ORF1ab/nsp227R27RcgTcgC11AY.50.000021
ORF1ab/nsp227R27LcGtcTt11AY.510.000909
ORF1ab/nsp227R27HcGtcAt11AY.530.000288
ORF1ab/nsp227R27GCgtGgt11AY.540.000095
ORF1ab/nsp227R27CCgtTgt11AY.550.000917
ORF1ab/nsp227R27CCgtTgt11AY.560.001605
ORF1ab/nsp227R27CCgtTgt11AY.570.000656
ORF1ab/nsp227R27SCgtAgt11AY.580.000907
ORF1ab/nsp227R27RcgTcgC11AY.60.000041
ORF1ab/nsp227R27LcGtcTt11AY.610.000105
ORF1ab/nsp227R27CCgtTgt11AY.630.000387
ORF1ab/nsp227R27CCgtTgt11AY.640.000595
ORF1ab/nsp227R27HcGtcAt11AY.650.000533
ORF1ab/nsp227R27CCgtTgt11AY.7.10.000113
ORF1ab/nsp227R27CCgtTgt11AY.720.001361
ORF1ab/nsp227R27LcGtcTt11AY.75.10.00018
ORF1ab/nsp227R27CCgtTgt11AY.790.001211
ORF1ab/nsp227R27CCgtTgt11AY.850.000427
ORF1ab/nsp227R27LcGtcTt11AY.9.20.000037
ORF1ab/nsp227R27HcGtcAt11AY.910.00073
ORF1ab/nsp227R27LcGtcTt11AY.920.000287
ORF1ab/nsp227R27RcgTcgC11AY.990.001049
ORF1ab/nsp227R27RcgTcgC11AY.99.20.000092
ORF1ab/nsp227R27HcGtcAt11AY.99.20.000092
ORF1ab/nsp227R27LcGtcTt11B0.000128
ORF1ab/nsp227R27del2cGTc--11B.10.000009
ORF1ab/nsp227R27CCgtTgt11B.1.1.1360.021277
ORF1ab/nsp227R27CCgtTgt11B.1.1.1420.017544
ORF1ab/nsp227R27CCgtTgt11B.1.1.1450.037037
ORF1ab/nsp227R27CCgtTgt11B.1.1.1530.001095
ORF1ab/nsp227R27LcGtcTt11B.1.1.1860.003436
ORF1ab/nsp227R27CCgtTgt11B.1.1.1870.00885
ORF1ab/nsp227R27CCgtTgt11B.1.1.1980.001468
ORF1ab/nsp227R27CCgtTgt11B.1.1.2360.006897
ORF1ab/nsp227R27CCgtTgt11B.1.1.2370.005405
ORF1ab/nsp227R27LcGtcTt11B.1.1.250.000569
ORF1ab/nsp227R27CCgtTgt11B.1.1.2540.011236
ORF1ab/nsp227R27CCgtTgt11B.1.1.2650.003155
ORF1ab/nsp227R27HcGtcAt11B.1.1.280.000311
ORF1ab/nsp227R27CCgtTgt11B.1.1.2840.000107
ORF1ab/nsp227R27CCgtTgt11B.1.1.2960.018182
ORF1ab/nsp227R27CCgtTgt11B.1.1.3010.001179
ORF1ab/nsp227R27RcgTcgC11B.1.1.3060.000438
ORF1ab/nsp227R27CCgtTgt11B.1.1.3250.025641
ORF1ab/nsp227R27CCgtTgt11B.1.1.330.000421
ORF1ab/nsp227R27CCgtTgt11B.1.1.3430.020833
ORF1ab/nsp227R27delCGT---11B.1.1.370.000193
ORF1ab/nsp227R27CCgtTgt11B.1.1.3740.002375
ORF1ab/nsp227R27CCgtTgt11B.1.1.3780.007299
ORF1ab/nsp227R27CCgtTgt11B.1.1.3890.006061
ORF1ab/nsp227R27CCgtTgt11B.1.1.390.00051
ORF1ab/nsp227R27GCgtGgt11B.1.1.3970.002252
ORF1ab/nsp227R27HcGtcAt11B.1.1.3980.003226
ORF1ab/nsp227R27CCgtTgt11B.1.1.3980.003226
ORF1ab/nsp227R27delCGT---11B.1.1.4200.001006
ORF1ab/nsp227R27CCgtTgt11B.1.1.4320.001266
ORF1ab/nsp227R27CCgtTgt11B.1.1.500.000679
ORF1ab/nsp227R27CCgtTgt11B.1.1.5070.008696
ORF1ab/nsp227R27RcgTcgC11B.1.1.5190.00004
ORF1ab/nsp227R27CCgtTgt11B.1.1.5240.020833
ORF1ab/nsp227R27CCgtTgt11B.1.1.5280.004808
ORF1ab/nsp227R27CCgtTgt11B.1.1.560.017857
ORF1ab/nsp227R27CCgtTgt11B.1.1.630.000386
ORF1ab/nsp227R27delCGT---11B.1.1.700.000341
ORF1ab/nsp227R27LcGtcTt11B.1.1.80.003584
ORF1ab/nsp227R27delCGT---11B.1.1.80.003584
ORF1ab/nsp227R27CCgtTgt11B.1.1.890.006061
ORF1ab/nsp227R27delCGT---11B.1.1600.000031
ORF1ab/nsp227R27CCgtTgt11B.1.160.150.00495
ORF1ab/nsp227R27CCgtTgt11B.1.160.320.004292
ORF1ab/nsp227R27LcGtcTt11B.1.1770.000013
ORF1ab/nsp227R27CCgtTgt11B.1.177.100.000878
ORF1ab/nsp227R27HcGtcAt11B.1.177.100.000878
ORF1ab/nsp227R27CCgtTgt11B.1.177.110.001698
ORF1ab/nsp227R27CCgtTgt11B.1.177.160.000664
ORF1ab/nsp227R27CCgtTgt11B.1.177.320.00135
ORF1ab/nsp227R27HcGtcAt11B.1.177.350.000691
ORF1ab/nsp227R27HcGtcAt11B.1.177.40.000211
ORF1ab/nsp227R27HcGtcAt11B.1.177.420.000894
ORF1ab/nsp227R27delCGT---11B.1.177.440.000519
ORF1ab/nsp227R27CCgtTgt11B.1.177.470.012987
ORF1ab/nsp227R27delCGT---11B.1.177.540.000606
ORF1ab/nsp227R27RcgTcgC11B.1.177.540.000606
ORF1ab/nsp227R27CCgtTgt11B.1.177.650.000665
ORF1ab/nsp227R27RcgTcgC11B.1.177.650.000665
ORF1ab/nsp227R27RcgTcgC11B.1.177.70.000165
ORF1ab/nsp227R27delCGT---11B.1.177.830.001481
ORF1ab/nsp227R27SCgtAgt11B.1.177.870.000728
ORF1ab/nsp227R27LcGtcTt11B.1.20.000009
ORF1ab/nsp227R27CCgtTgt11B.1.2230.002778
ORF1ab/nsp227R27delCGT---11B.1.230.006061
ORF1ab/nsp227R27SCgtAgt11B.1.2340.000132
ORF1ab/nsp227R27CCgtTgt11B.1.2360.002053
ORF1ab/nsp227R27LcGtcTt11B.1.2430.00007
ORF1ab/nsp227R27delCGT---11B.1.2580.000067
ORF1ab/nsp227R27CCgtTgt11B.1.258.140.00098
ORF1ab/nsp227R27CCgtTgt11B.1.258.30.001675
ORF1ab/nsp227R27CCgtTgt11B.1.2600.003344
ORF1ab/nsp227R27CCgtTgt11B.1.2790.000514
ORF1ab/nsp227R27CCgtTgt11B.1.3280.03125
ORF1ab/nsp227R27LcGtcTt11B.1.3290.000608
ORF1ab/nsp227R27HcGtcAt11B.1.3510.00003
ORF1ab/nsp227R27RcgTcgC11B.1.360.000146
ORF1ab/nsp227R27RcgTcgA11B.1.36.180.00042
ORF1ab/nsp227R27LcGtcTt11B.1.36.270.000763
ORF1ab/nsp227R27LcGtcTt11B.1.36.290.000517
ORF1ab/nsp227R27CCgtTgt11B.1.36.290.000517
ORF1ab/nsp227R27CCgtTgt11B.1.36.80.001
ORF1ab/nsp227R27CCgtTgt11B.1.3800.006623
ORF1ab/nsp227R27HcGtcAt11B.1.416.10.001563
ORF1ab/nsp227R27CCgtTgt11B.1.4210.007463
ORF1ab/nsp227R27del1cGtc-t11B.1.4290.000024
ORF1ab/nsp227R27delCGT---11B.1.4290.000024
ORF1ab/nsp227R27CCgtTgt11B.1.4320.011236
ORF1ab/nsp227R27HcGtcAt11B.1.4380.006536
ORF1ab/nsp227R27CCgtTgt11B.1.4410.009615
ORF1ab/nsp227R27CCgtTgt11B.1.4480.002625
ORF1ab/nsp227R27SCgtAgt11B.1.4620.007246
ORF1ab/nsp227R27RcgTcgC11B.1.466.10.007194
ORF1ab/nsp227R27CCgtTgt11B.1.4680.005714
ORF1ab/nsp227R27RcgTcgG11B.1.4970.000315
ORF1ab/nsp227R27CCgtTgt11B.1.4970.000315
ORF1ab/nsp227R27HcGtcAt11B.1.4990.00105
ORF1ab/nsp227R27HcGtcAt11B.1.5050.004386
ORF1ab/nsp227R27CCgtTgt11B.1.5050.004386
ORF1ab/nsp227R27CCgtTgt11B.1.5110.034483
ORF1ab/nsp227R27CCgtTgt11B.1.5170.000427
ORF1ab/nsp227R27GCgtGgt11B.1.5440.006024
ORF1ab/nsp227R27CCgtTgt11B.1.5450.014493
ORF1ab/nsp227R27CCgtTgt11B.1.5640.000426
ORF1ab/nsp227R27CCgtTgt11B.1.5650.00081
ORF1ab/nsp227R27CCgtTgt11B.1.575.10.002439
ORF1ab/nsp227R27CCgtTgt11B.1.5800.004065
ORF1ab/nsp227R27CCgtTgt11B.1.5820.000491
ORF1ab/nsp227R27CCgtTgt11B.1.5950.000261
ORF1ab/nsp227R27PcGtcCt11B.1.5960.000087
ORF1ab/nsp227R27SCgtAgt11B.1.617.20.000004
ORF1ab/nsp227R27delCGT---11B.1.617.30.002985
ORF1ab/nsp227R27CCgtTgt11B.1.621.10.000506
ORF1ab/nsp227R27HcGtcAt11B.1.6280.000352
ORF1ab/nsp227R27LcGtcTt11B.1.6280.000352
ORF1ab/nsp227R27CCgtTgt11B.1.9.40.006135
ORF1ab/nsp227R27CCgtTgt11B.1.9.50.005682
ORF1ab/nsp227R27SCgtAgt11B.110.005128
ORF1ab/nsp227R27LcGtcTt11B.230.002924
ORF1ab/nsp227R27CCgtTgt11B.330.021277
ORF1ab/nsp227R27CCgtTgt11B.4.40.018868
ORF1ab/nsp227R27CCgtTgt11B.400.000364
ORF1ab/nsp227R27CCgtTgt11B.450.003831
ORF1ab/nsp227R27CCgtTgt11B.60.00091
ORF1ab/nsp227R27CCgtTgt11C.160.00106
ORF1ab/nsp227R27delCGT---11C.350.000774
ORF1ab/nsp227R27CCgtTgt11C.36.3.10.002717
ORF1ab/nsp227R27GCgtGgt11C.370.000116
ORF1ab/nsp227R27GCgtGgt11C.37.10.002618
ORF1ab/nsp227R27CCgtTgt11C.390.018868
ORF1ab/nsp227R27CCgtTgt11N.40.004255
ORF1ab/nsp227R27CCgtTgt11N.60.007092
ORF1ab/nsp227R27RcgTcgC11N.90.005952
ORF1ab/nsp227R27LcGtcTt11P.10.000016
ORF1ab/nsp227R27delCGT---11P.10.000016
ORF1ab/nsp227R27CCgtTgt11P.1.150.000232
ORF1ab/nsp227R27LcGtcTt11P.1.70.000319
ORF1ab/nsp227R27CCgtTgt11Q.60.006623
ORF1ab/nsp227R27CCgtTgt11Q.70.001111
ORF1ab/nsp227R27CCgtTgt11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.