CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 267 | N267N | N447N | syn | aaT | aaC | 3156 | 3156 | 1 | 1604-1606 |
ORF1ab/nsp2 | 267 | N267del | N447del | del | AAT | --- | 443 | 443 | 1 | 1604-1606 |
ORF1ab/nsp2 | 267 | N267D | N447D | nonsyn | Aat | Gat | 299 | 299 | 1 | 1604-1606 |
ORF1ab/nsp2 | 267 | N267S | N447S | nonsyn | aAt | aGt | 222 | 221 | 0.995495 | 1604-1606 |
ORF1ab/nsp2 | 267 | N267S | N447S | nonsyn | aAT | aGC | 222 | 1 | 0.0045045 | 1604-1606 |
ORF1ab/nsp2 | 267 | N267K | N447K | nonsyn | aaT | aaA | 110 | 57 | 0.518182 | 1604-1606 |
ORF1ab/nsp2 | 267 | N267K | N447K | nonsyn | aaT | aaG | 110 | 53 | 0.481818 | 1604-1606 |
ORF1ab/nsp2 | 267 | N267del2 | N447del2 | del | aAT | a-- | 44 | 42 | 0.954545 | 1604-1606 |
ORF1ab/nsp2 | 267 | N267del2 | N447del2 | del | AAt | --t | 44 | 2 | 0.0454545 | 1604-1606 |
ORF1ab/nsp2 | 267 | N267T | N447T | nonsyn | aAt | aCt | 38 | 37 | 0.973684 | 1604-1606 |
ORF1ab/nsp2 | 267 | N267T | N447T | nonsyn | aAT | aCC | 38 | 1 | 0.0263158 | 1604-1606 |
ORF1ab/nsp2 | 267 | N267del1 | N447del1 | del | AaT | -aN | 17 | 8 | 0.470588 | 1604-1606 |
ORF1ab/nsp2 | 267 | N267del1 | N447del1 | del | AAT | -NN | 17 | 4 | 0.235294 | 1604-1606 |
ORF1ab/nsp2 | 267 | N267del1 | N447del1 | del | aaT | aa- | 17 | 3 | 0.176471 | 1604-1606 |
ORF1ab/nsp2 | 267 | N267del1 | N447del1 | del | Aat | -at | 17 | 2 | 0.117647 | 1604-1606 |
ORF1ab/nsp2 | 267 | N267I | N447I | nonsyn | aAt | aTt | 14 | 13 | 0.928571 | 1604-1606 |
ORF1ab/nsp2 | 267 | N267I | N447I | nonsyn | aAT | aTC | 14 | 1 | 0.0714286 | 1604-1606 |
ORF1ab/nsp2 | 267 | N267Y | N447Y | nonsyn | Aat | Tat | 13 | 13 | 1 | 1604-1606 |
ORF1ab/nsp2 | 267 | N267H | N447H | nonsyn | Aat | Cat | 1 | 1 | 1 | 1604-1606 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 3156 | 3156 | All | 0.000604 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 647 | 647 | B | 0.082694 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 443 | 443 | All | 0.000085 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 312 | 312 | B.23 | 0.912281 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 299 | 299 | All | 0.000057 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 257 | 257 | B.45 | 0.984674 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 231 | 231 | B.55 | 0.681416 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 221 | 222 | All | 0.000042 |
ORF1ab/nsp2 | 267 | N267S | aAT | aGC | 1 | 222 | All | 0 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 183 | 183 | B.1.1.7 | 0.000164 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 178 | 178 | B.11 | 0.912821 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 147 | 147 | B.1.1.170 | 0.183292 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 129 | 129 | C.23 | 0.75 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 117 | 117 | B.10 | 0.966942 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 114 | 114 | AY.4 | 0.000177 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaA | 57 | 110 | All | 0.000011 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaG | 53 | 110 | All | 0.00001 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 98 | 98 | B.1.617.2 | 0.000369 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 88 | 88 | B.52 | 0.888889 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 66 | 66 | B.1.160 | 0.002058 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 61 | 61 | B.27 | 0.938462 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 58 | 58 | B.1.2 | 0.000511 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 58 | 58 | P.1.1 | 0.018424 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 56 | 56 | B.57 | 0.848485 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 55 | 55 | B.15 | 0.964912 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 53 | 53 | B.1 | 0.000485 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 49 | 49 | B.1.2 | 0.000431 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 46 | 46 | B.1.177.86 | 0.008439 |
ORF1ab/nsp2 | 267 | N267del2 | aAT | a-- | 42 | 44 | All | 0.000008 |
ORF1ab/nsp2 | 267 | N267del2 | AAt | --t | 2 | 44 | All | 0 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaG | 44 | 44 | AY.4.2 | 0.000954 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 43 | 43 | AY.53 | 0.012363 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 43 | 43 | B.26 | 0.632353 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 40 | 40 | AY.5.3 | 0.013495 |
ORF1ab/nsp2 | 267 | N267T | aAt | aCt | 37 | 38 | All | 0.000007 |
ORF1ab/nsp2 | 267 | N267T | aAT | aCC | 1 | 38 | All | 0 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 38 | 38 | AY.4 | 0.000059 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 37 | 37 | B.47 | 0.755102 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 36 | 36 | B.1.1 | 0.000653 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 35 | 35 | AY.98 | 0.002765 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 34 | 34 | B.1.429 | 0.0008 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 29 | 29 | AY.43 | 0.000128 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 29 | 29 | B.1 | 0.000266 |
ORF1ab/nsp2 | 267 | N267del2 | aAT | a-- | 26 | 26 | AY.98 | 0.002054 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 25 | 25 | B.1.258.17 | 0.002599 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 21 | 21 | AY.25 | 0.000126 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 21 | 21 | B.1.1.7 | 0.000019 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 21 | 21 | P.1 | 0.000331 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 20 | 20 | AY.44 | 0.000122 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 20 | 20 | B.1.621 | 0.00177 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 20 | 20 | B.49 | 1 |
ORF1ab/nsp2 | 267 | N267del1 | AaT | -aN | 8 | 17 | All | 0.000002 |
ORF1ab/nsp2 | 267 | N267del1 | AAT | -NN | 4 | 17 | All | 0.000001 |
ORF1ab/nsp2 | 267 | N267del1 | aaT | aa- | 3 | 17 | All | 0.000001 |
ORF1ab/nsp2 | 267 | N267del1 | Aat | -at | 2 | 17 | All | 0 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaA | 15 | 16 | B.1.1.7 | 0.000013 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaG | 1 | 16 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 267 | N267I | aAt | aTt | 13 | 14 | All | 0.000002 |
ORF1ab/nsp2 | 267 | N267I | aAT | aTC | 1 | 14 | All | 0 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 14 | 14 | B.1.160 | 0.000437 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 14 | 14 | B.1.637 | 0.001023 |
ORF1ab/nsp2 | 267 | N267Y | Aat | Tat | 13 | 13 | All | 0.000002 |
ORF1ab/nsp2 | 267 | N267T | aAt | aCt | 13 | 13 | B.1.1.7 | 0.000012 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 12 | 12 | B.1.1.7 | 0.000011 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 11 | 11 | AY.3 | 0.000109 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 11 | 11 | AY.4 | 0.000017 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 11 | 11 | B.1.427 | 0.000555 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 11 | 11 | C.37 | 0.001277 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 10 | 10 | AY.102 | 0.000265 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 10 | 10 | B.1.243 | 0.000696 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 10 | 10 | B.1.517 | 0.00427 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 9 | 9 | AY.103 | 0.000056 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 9 | 9 | AY.39.1 | 0.000357 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 9 | 9 | AY.44 | 0.000055 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 9 | 9 | B.1.1.7 | 0.000008 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 9 | 9 | B.1.258 | 0.000599 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 8 | 8 | AY.20 | 0.000311 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 8 | 8 | AY.25 | 0.000048 |
ORF1ab/nsp2 | 267 | N267T | aAt | aCt | 8 | 8 | AY.4 | 0.000012 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 8 | 8 | B.1.1 | 0.000145 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 8 | 8 | B.1.334 | 0.145455 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 8 | 8 | B.1.438.1 | 0.000858 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 8 | 8 | B.1.617.2 | 0.00003 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 8 | 8 | B.47 | 0.163265 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaA | 8 | 8 | C.35 | 0.006192 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 7 | 7 | B.1.617.2 | 0.000026 |
ORF1ab/nsp2 | 267 | N267I | aAt | aTt | 7 | 7 | C.18 | 0.018135 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 6 | 6 | AY.110 | 0.000676 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 6 | 6 | AY.25 | 0.000036 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 6 | 6 | AY.29 | 0.000095 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 6 | 6 | AY.9.1 | 0.000502 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 6 | 6 | AY.9.2 | 0.00022 |
ORF1ab/nsp2 | 267 | N267del2 | aAT | a-- | 6 | 6 | B | 0.000767 |
ORF1ab/nsp2 | 267 | N267del1 | AaT | -aN | 5 | 6 | B | 0.000639 |
ORF1ab/nsp2 | 267 | N267del1 | aaT | aa- | 1 | 6 | B | 0.000128 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 6 | 6 | B.1.1.1 | 0.00196 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 6 | 6 | B.1.1.434 | 0.002091 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaA | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 6 | 6 | B.1.234 | 0.000792 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 6 | 6 | B.1.526 | 0.000141 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 5 | 5 | AY.26 | 0.000142 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 5 | 5 | AY.3 | 0.00005 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaG | 4 | 5 | AY.4 | 0.000006 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaA | 1 | 5 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 4 | 5 | AY.44 | 0.000024 |
ORF1ab/nsp2 | 267 | N267S | aAT | aGC | 1 | 5 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 5 | 5 | B.1 | 0.000046 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 5 | 5 | B.1.1.1 | 0.001633 |
ORF1ab/nsp2 | 267 | N267T | aAt | aCt | 5 | 5 | B.1.1.222 | 0.00102 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp2 | 267 | N267del2 | aAT | a-- | 5 | 5 | B.1.617.2 | 0.000019 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 4 | 4 | AY.25 | 0.000024 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp2 | 267 | N267del1 | AAT | -NN | 4 | 4 | AY.4 | 0.000006 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaA | 4 | 4 | AY.43 | 0.000018 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 4 | 4 | AY.98.1 | 0.000194 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 4 | 4 | B.1.1.28 | 0.001245 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 4 | 4 | B.1.177 | 0.000053 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 4 | 4 | B.1.221 | 0.000284 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 3 | 3 | A.23.1 | 0.002113 |
ORF1ab/nsp2 | 267 | N267Y | Aat | Tat | 3 | 3 | AY.103 | 0.000019 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaA | 3 | 3 | AY.119 | 0.000106 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 3 | 3 | AY.43 | 0.000013 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 3 | 3 | AY.9 | 0.000203 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaA | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 3 | 3 | B.1.1.316 | 0.002775 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 3 | 3 | B.1.284 | 0.039474 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 3 | 3 | B.1.351 | 0.000089 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 3 | 3 | B.1.404 | 0.003906 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaA | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 3 | 3 | B.1.561 | 0.001191 |
ORF1ab/nsp2 | 267 | N267del2 | aAT | a-- | 3 | 3 | B.10 | 0.024793 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 3 | 3 | Q.1 | 0.000379 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 2 | 2 | A | 0.000774 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 2 | 2 | AY.103 | 0.000012 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaG | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaA | 1 | 2 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 2 | 2 | AY.34 | 0.000194 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 2 | 2 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 2 | 2 | AY.54 | 0.000191 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 2 | 2 | AY.85 | 0.000854 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 267 | N267T | aAt | aCt | 2 | 2 | B.1.1.189 | 0.003026 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 2 | 2 | B.1.1.25 | 0.001137 |
ORF1ab/nsp2 | 267 | N267Y | Aat | Tat | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 2 | 2 | B.1.1.37 | 0.000386 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaA | 2 | 2 | B.1.1.432 | 0.002532 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 2 | 2 | B.1.1.521 | 0.010695 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 2 | 2 | B.1.1.63 | 0.000772 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 2 | 2 | B.1.177.81 | 0.000379 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaA | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 2 | 2 | B.1.36 | 0.000292 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 2 | 2 | B.1.36.38 | 0.003284 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 2 | 2 | B.1.429 | 0.000047 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 2 | 2 | B.1.551 | 0.002581 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 2 | 2 | B.1.596 | 0.000174 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 2 | 2 | B.1.609 | 0.000959 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaG | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 2 | 2 | B.23 | 0.005848 |
ORF1ab/nsp2 | 267 | N267del2 | aAT | a-- | 2 | 2 | B.23 | 0.005848 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 2 | 2 | B.4 | 0.004415 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 2 | 2 | C.23 | 0.011628 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 2 | 2 | C.36 | 0.001821 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 2 | 2 | P.1 | 0.000032 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaG | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 267 | N267Y | Aat | Tat | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | A.2.3 | 0.004739 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | A.2.5.1 | 0.004808 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | A.5 | 0.001923 |
ORF1ab/nsp2 | 267 | N267H | Aat | Cat | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaA | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp2 | 267 | N267T | aAt | aCt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 267 | N267T | aAt | aCt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaA | 1 | 1 | AY.3 | 0.00001 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 1 | 1 | AY.3.1 | 0.000085 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 1 | 1 | AY.35 | 0.000233 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaA | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | AY.4.5 | 0.000107 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 267 | N267del1 | Aat | -at | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 267 | N267T | aAt | aCt | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 267 | N267Y | Aat | Tat | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 267 | N267del2 | AAt | --t | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 267 | N267H | Aat | Cat | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaA | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 267 | N267I | aAT | aTC | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaA | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 267 | N267del1 | AaT | -aN | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 267 | N267Y | Aat | Tat | 1 | 1 | B | 0.000128 |
ORF1ab/nsp2 | 267 | N267I | aAt | aTt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 267 | N267T | aAt | aCt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 1 | 1 | B.1.1.117 | 0.009709 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 267 | N267Y | Aat | Tat | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | B.1.1.294 | 0.001266 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 1 | 1 | B.1.1.297 | 0.002237 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | B.1.1.334 | 0.016393 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | B.1.1.375 | 0.011905 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | B.1.1.524 | 0.020833 |
ORF1ab/nsp2 | 267 | N267del2 | AAt | --t | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 267 | N267I | aAt | aTt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 267 | N267Y | Aat | Tat | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 267 | N267Y | Aat | Tat | 1 | 1 | B.1.160.12 | 0.00641 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp2 | 267 | N267I | aAt | aTt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 267 | N267T | aAt | aCt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp2 | 267 | N267Y | Aat | Tat | 1 | 1 | B.1.177.4 | 0.000211 |
ORF1ab/nsp2 | 267 | N267I | aAt | aTt | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | B.1.177.84 | 0.006667 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 267 | N267T | aAT | aCC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp2 | 267 | N267Y | Aat | Tat | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaA | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp2 | 267 | N267del1 | Aat | -at | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 1 | 1 | B.1.236 | 0.002053 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp2 | 267 | N267I | aAt | aTt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp2 | 267 | N267T | aAt | aCt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | B.1.450 | 0.011364 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | B.1.453 | 0.003236 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | B.1.520 | 0.021739 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaA | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 1 | 1 | B.1.526 | 0.000024 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 267 | N267del1 | aaT | aa- | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 1 | 1 | B.1.621 | 0.000089 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaA | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | B.11 | 0.005128 |
ORF1ab/nsp2 | 267 | N267del1 | AaT | -aN | 1 | 1 | B.26 | 0.014706 |
ORF1ab/nsp2 | 267 | N267I | aAt | aTt | 1 | 1 | B.3.1 | 0.001658 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | B.39 | 0.002331 |
ORF1ab/nsp2 | 267 | N267del1 | aaT | aa- | 1 | 1 | B.47 | 0.020408 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | B.5 | 0.038462 |
ORF1ab/nsp2 | 267 | N267del1 | AaT | -aN | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp2 | 267 | N267T | aAt | aCt | 1 | 1 | B.58 | 0.010204 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | C.1 | 0.002392 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | C.17 | 0.055556 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | N.3 | 0.005814 |
ORF1ab/nsp2 | 267 | N267D | Aat | Gat | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 267 | N267K | aaT | aaA | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 267 | N267T | aAt | aCt | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp2 | 267 | N267S | aAt | aGt | 1 | 1 | P.1.2 | 0.001156 |
ORF1ab/nsp2 | 267 | N267del | AAT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 267 | N267T | aAt | aCt | 1 | 1 | Q.8 | 0.000165 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp2 | 267 | N267N | aaT | aaC | 1 | 1 | Y.1 | 0.012821 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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