CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 266 | L266F | L446F | nonsyn | Ctt | Ttt | 1915 | 1913 | 0.998956 | 1601-1603 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1913 | 1915 | All | 0.000366 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 264 | 264 | L.3 | 0.93617 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 247 | 247 | B.1.1.7 | 0.000221 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 159 | 160 | AY.4 | 0.000247 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 115 | 115 | AY.3.1 | 0.009805 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 98 | 98 | B.1.617.2 | 0.000369 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 94 | 94 | B.1.517 | 0.040137 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 90 | 90 | B.1.2 | 0.000792 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 43 | 43 | AY.25 | 0.000259 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 33 | 33 | AY.43 | 0.000146 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 31 | 31 | AY.94 | 0.013723 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 30 | 30 | B.1.1.176 | 0.013181 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 29 | 29 | B.1.177 | 0.000382 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 25 | 26 | AY.102 | 0.000663 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 26 | 26 | AY.44 | 0.000158 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 26 | 26 | P.1 | 0.00041 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 25 | 25 | B.1.351 | 0.000743 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 23 | 23 | AY.85 | 0.009825 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 21 | 21 | B.1 | 0.000192 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 19 | 19 | B.1.1.192 | 0.04388 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 19 | 19 | B.1.1.317 | 0.007822 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 19 | 19 | B.1.265 | 0.024142 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 19 | 19 | B.1.427 | 0.000959 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 18 | 18 | AY.100 | 0.000828 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 18 | 18 | AY.62 | 0.007843 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 18 | 18 | B.1.637 | 0.001315 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 15 | 15 | B.1.1.464 | 0.022091 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 15 | 15 | B.1.1.519 | 0.000596 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 13 | 13 | AY.103 | 0.000081 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 13 | 13 | B.1.1 | 0.000236 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 12 | 12 | B.1.258 | 0.000799 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 11 | 11 | B.1.526 | 0.000259 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 11 | 11 | B.1.630 | 0.057592 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 9 | 9 | AY.5 | 0.000186 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 9 | 9 | C.37 | 0.001045 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 8 | 8 | AY.47 | 0.000249 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 8 | 8 | B.1.429 | 0.000188 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 7 | 7 | AY.7 | 0.001372 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 7 | 7 | B.1.1.169 | 0.127273 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 7 | 7 | B.1.240 | 0.001509 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 7 | 7 | C.16 | 0.007423 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 6 | 6 | AY.5.3 | 0.002024 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 6 | 6 | B.1.3 | 0.015707 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 6 | 6 | B.1.561 | 0.002382 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 5 | 5 | B.1.497 | 0.001574 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 4 | 4 | AY.46.5 | 0.000794 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 4 | 4 | B.1.177.6 | 0.003906 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 3 | 3 | AY.105 | 0.001929 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | AY.46.3 | 0.001867 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B.1.1.46 | 0.008734 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B.1.1.51 | 0.003436 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B.1.23 | 0.012121 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B.1.422 | 0.001625 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.408 | 0.027778 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.428 | 0.009434 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.62 | 0.027027 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.258.24 | 0.010753 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.36.25 | 0.002208 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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