CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 266 & Codon = Ttt

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2266L266FL446FnonsynCttTtt191519130.9989561601-1603

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2266L266FCttTtt19131915All0.000366
ORF1ab/nsp2266L266FCttTtt264264L.30.93617
ORF1ab/nsp2266L266FCttTtt247247B.1.1.70.000221
ORF1ab/nsp2266L266FCttTtt159160AY.40.000247
ORF1ab/nsp2266L266FCttTtt115115AY.3.10.009805
ORF1ab/nsp2266L266FCttTtt9898B.1.617.20.000369
ORF1ab/nsp2266L266FCttTtt9494B.1.5170.040137
ORF1ab/nsp2266L266FCttTtt9090B.1.20.000792
ORF1ab/nsp2266L266FCttTtt4343AY.250.000259
ORF1ab/nsp2266L266FCttTtt3333AY.430.000146
ORF1ab/nsp2266L266FCttTtt3131AY.940.013723
ORF1ab/nsp2266L266FCttTtt3030B.1.1.1760.013181
ORF1ab/nsp2266L266FCttTtt2929B.1.1770.000382
ORF1ab/nsp2266L266FCttTtt2526AY.1020.000663
ORF1ab/nsp2266L266FCttTtt2626AY.440.000158
ORF1ab/nsp2266L266FCttTtt2626P.10.00041
ORF1ab/nsp2266L266FCttTtt2525B.1.3510.000743
ORF1ab/nsp2266L266FCttTtt2323AY.850.009825
ORF1ab/nsp2266L266FCttTtt2121B.10.000192
ORF1ab/nsp2266L266FCttTtt1919B.1.1.1920.04388
ORF1ab/nsp2266L266FCttTtt1919B.1.1.3170.007822
ORF1ab/nsp2266L266FCttTtt1919B.1.2650.024142
ORF1ab/nsp2266L266FCttTtt1919B.1.4270.000959
ORF1ab/nsp2266L266FCttTtt1818AY.1000.000828
ORF1ab/nsp2266L266FCttTtt1818AY.620.007843
ORF1ab/nsp2266L266FCttTtt1818B.1.6370.001315
ORF1ab/nsp2266L266FCttTtt1515B.1.1.4640.022091
ORF1ab/nsp2266L266FCttTtt1515B.1.1.5190.000596
ORF1ab/nsp2266L266FCttTtt1313AY.1030.000081
ORF1ab/nsp2266L266FCttTtt1313AY.30.000129
ORF1ab/nsp2266L266FCttTtt1313B.1.10.000236
ORF1ab/nsp2266L266FCttTtt1212B.1.2580.000799
ORF1ab/nsp2266L266FCttTtt1111B.1.5260.000259
ORF1ab/nsp2266L266FCttTtt1111B.1.6300.057592
ORF1ab/nsp2266L266FCttTtt99AY.200.00035
ORF1ab/nsp2266L266FCttTtt99AY.50.000186
ORF1ab/nsp2266L266FCttTtt99C.370.001045
ORF1ab/nsp2266L266FCttTtt88AY.470.000249
ORF1ab/nsp2266L266FCttTtt88B.1.4290.000188
ORF1ab/nsp2266L266FCttTtt77AY.70.001372
ORF1ab/nsp2266L266FCttTtt77B.1.1.1690.127273
ORF1ab/nsp2266L266FCttTtt77B.1.2400.001509
ORF1ab/nsp2266L266FCttTtt77C.160.007423
ORF1ab/nsp2266L266FCttTtt66AY.1190.000212
ORF1ab/nsp2266L266FCttTtt66AY.5.30.002024
ORF1ab/nsp2266L266FCttTtt66B.1.30.015707
ORF1ab/nsp2266L266FCttTtt66B.1.5610.002382
ORF1ab/nsp2266L266FCttTtt66P.1.140.000287
ORF1ab/nsp2266L266FCttTtt55AY.290.000079
ORF1ab/nsp2266L266FCttTtt55AY.330.000334
ORF1ab/nsp2266L266FCttTtt55AY.4.20.000108
ORF1ab/nsp2266L266FCttTtt55AY.60.000206
ORF1ab/nsp2266L266FCttTtt55B.1.2210.000355
ORF1ab/nsp2266L266FCttTtt55B.1.4970.001574
ORF1ab/nsp2266L266FCttTtt44AY.230.000279
ORF1ab/nsp2266L266FCttTtt44AY.450.000487
ORF1ab/nsp2266L266FCttTtt44AY.46.50.000794
ORF1ab/nsp2266L266FCttTtt44B.1.1600.000125
ORF1ab/nsp2266L266FCttTtt44B.1.177.60.003906
ORF1ab/nsp2266L266FCttTtt44B.1.3110.001098
ORF1ab/nsp2266L266FCttTtt44P.20.000747
ORF1ab/nsp2266L266FCttTtt33AY.1050.001929
ORF1ab/nsp2266L266FCttTtt33AY.340.000291
ORF1ab/nsp2266L266FCttTtt33AY.390.000074
ORF1ab/nsp2266L266FCttTtt33AY.4.50.000322
ORF1ab/nsp2266L266FCttTtt33B.1.1.10.00098
ORF1ab/nsp2266L266FCttTtt33B.1.36.80.003
ORF1ab/nsp2266L266FCttTtt33B.1.6210.000266
ORF1ab/nsp2266L266FCttTtt33D.20.000225
ORF1ab/nsp2266L266FCttTtt220.111111
ORF1ab/nsp2266L266FCttTtt22AY.1060.00067
ORF1ab/nsp2266L266FCttTtt22AY.190.002281
ORF1ab/nsp2266L266FCttTtt22AY.260.000057
ORF1ab/nsp2266L266FCttTtt22AY.360.000296
ORF1ab/nsp2266L266FCttTtt22AY.460.000208
ORF1ab/nsp2266L266FCttTtt22AY.46.30.001867
ORF1ab/nsp2266L266FCttTtt22AY.46.40.000329
ORF1ab/nsp2266L266FCttTtt22AY.570.001312
ORF1ab/nsp2266L266FCttTtt22AY.580.001815
ORF1ab/nsp2266L266FCttTtt22AY.690.000373
ORF1ab/nsp2266L266FCttTtt22AY.920.000575
ORF1ab/nsp2266L266FCttTtt22B0.000256
ORF1ab/nsp2266L266FCttTtt22B.1.1.100.00223
ORF1ab/nsp2266L266FCttTtt22B.1.1.2220.000408
ORF1ab/nsp2266L266FCttTtt22B.1.1.280.000622
ORF1ab/nsp2266L266FCttTtt22B.1.1.4090.005666
ORF1ab/nsp2266L266FCttTtt22B.1.1.460.008734
ORF1ab/nsp2266L266FCttTtt22B.1.1.510.003436
ORF1ab/nsp2266L266FCttTtt22B.1.177.440.001038
ORF1ab/nsp2266L266FCttTtt22B.1.230.012121
ORF1ab/nsp2266L266FCttTtt22B.1.258.170.000208
ORF1ab/nsp2266L266FCttTtt22B.1.4000.000858
ORF1ab/nsp2266L266FCttTtt22B.1.4220.001625
ORF1ab/nsp2266L266FCttTtt11A.2.50.000499
ORF1ab/nsp2266L266FCttTtt11A.23.10.000704
ORF1ab/nsp2266L266FCttTtt11AD.20.000219
ORF1ab/nsp2266L266FCttTtt11AY.100.00053
ORF1ab/nsp2266L266FCttTtt11AY.1170.000085
ORF1ab/nsp2266L266FCttTtt11AY.1180.000063
ORF1ab/nsp2266L266FCttTtt11AY.1210.000135
ORF1ab/nsp2266L266FCttTtt11AY.130.000161
ORF1ab/nsp2266L266FCttTtt11AY.4.30.000842
ORF1ab/nsp2266L266FCttTtt11AY.420.00004
ORF1ab/nsp2266L266FCttTtt11AY.46.60.000072
ORF1ab/nsp2266L266FCttTtt11AY.520.000814
ORF1ab/nsp2266L266FCttTtt11AY.550.000917
ORF1ab/nsp2266L266FCttTtt11AY.700.000209
ORF1ab/nsp2266L266FCttTtt11AY.750.000056
ORF1ab/nsp2266L266FCttTtt11AY.75.10.00018
ORF1ab/nsp2266L266FCttTtt11AY.90.000068
ORF1ab/nsp2266L266FCttTtt11AY.9.20.000037
ORF1ab/nsp2266L266FCttTtt11AY.910.00073
ORF1ab/nsp2266L266FCttTtt11AY.980.000079
ORF1ab/nsp2266L266FCttTtt11AY.99.20.000092
ORF1ab/nsp2266L266FCttTtt11AZ.10.000867
ORF1ab/nsp2266L266FCttTtt11AZ.50.003509
ORF1ab/nsp2266L266FCttTtt11B.1.1.1530.001095
ORF1ab/nsp2266L266FCttTtt11B.1.1.2140.000055
ORF1ab/nsp2266L266FCttTtt11B.1.1.2160.00089
ORF1ab/nsp2266L266FCttTtt11B.1.1.2800.003086
ORF1ab/nsp2266L266FCttTtt11B.1.1.3040.002809
ORF1ab/nsp2266L266FCttTtt11B.1.1.330.000421
ORF1ab/nsp2266L266FCttTtt11B.1.1.3720.000689
ORF1ab/nsp2266L266FCttTtt11B.1.1.4080.027778
ORF1ab/nsp2266L266FCttTtt11B.1.1.4280.009434
ORF1ab/nsp2266L266FCttTtt11B.1.1.4330.001425
ORF1ab/nsp2266L266FCttTtt11B.1.1.540.003021
ORF1ab/nsp2266L266FCttTtt11B.1.1.620.027027
ORF1ab/nsp2266L266FCttTtt11B.1.1.630.000386
ORF1ab/nsp2266L266FCttTtt11B.1.1.700.000341
ORF1ab/nsp2266L266FCttTtt11B.1.177.210.000076
ORF1ab/nsp2266L266FCttTtt11B.1.177.330.001645
ORF1ab/nsp2266L266FCttTtt11B.1.177.570.000281
ORF1ab/nsp2266L266FCttTtt11B.1.177.70.000165
ORF1ab/nsp2266L266FCttTtt11B.1.177.720.00339
ORF1ab/nsp2266L266FCttTtt11B.1.177.810.000189
ORF1ab/nsp2266L266FCttTtt11B.1.1890.004292
ORF1ab/nsp2266L266FCttTtt11B.1.2140.003663
ORF1ab/nsp2266L266FCttTtt11B.1.2180.005155
ORF1ab/nsp2266L266FCttTtt11B.1.2320.000537
ORF1ab/nsp2266L266FCttTtt11B.1.2430.00007
ORF1ab/nsp2266L266FCttTtt11B.1.258.240.010753
ORF1ab/nsp2266L266FCttTtt11B.1.3500.002933
ORF1ab/nsp2266L266FCttTtt11B.1.351.30.000876
ORF1ab/nsp2266L266FCttTtt11B.1.36.100.004785
ORF1ab/nsp2266L266FCttTtt11B.1.36.160.001425
ORF1ab/nsp2266L266FCttTtt11B.1.36.250.002208
ORF1ab/nsp2266L266FCttTtt11B.1.3670.000792
ORF1ab/nsp2266L266FCttTtt11B.1.4040.001302
ORF1ab/nsp2266L266FCttTtt11B.1.438.10.000107
ORF1ab/nsp2266L266FCttTtt11B.1.466.20.000391
ORF1ab/nsp2266L266FCttTtt11B.1.4700.001404
ORF1ab/nsp2266L266FCttTtt11B.1.4800.002488
ORF1ab/nsp2266L266FCttTtt11B.1.5960.000087
ORF1ab/nsp2266L266FCttTtt11B.1.5970.00463
ORF1ab/nsp2266L266FCttTtt11B.1.6090.000479
ORF1ab/nsp2266L266FCttTtt11B.1.617.10.000129
ORF1ab/nsp2266L266FCttTtt11B.1.6360.006711
ORF1ab/nsp2266L266FCttTtt11B.400.000364
ORF1ab/nsp2266L266FCttTtt11C.360.000911
ORF1ab/nsp2266L266FCttTtt11C.40.01
ORF1ab/nsp2266L266FCttTtt11P.1.70.000319
ORF1ab/nsp2266L266FCttTtt11Q.10.000126