CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 266

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
ORF1ab/nsp2	266	L266F	L446F	nonsyn	Ctt	Ttt	1915	1913	0.998956	1601-1603
ORF1ab/nsp2	266	L266F	L446F	nonsyn	CtT	TtC	1915	2	0.00104439	1601-1603
ORF1ab/nsp2	266	L266del	L446del	del	CTT	---	1102	1102	1	1601-1603
ORF1ab/nsp2	266	L266L	L446L	syn	ctT	ctC	442	234	0.529412	1601-1603
ORF1ab/nsp2	266	L266L	L446L	syn	ctT	ctA	442	202	0.457014	1601-1603
ORF1ab/nsp2	266	L266L	L446L	syn	ctT	ctG	442	6	0.0135747	1601-1603
ORF1ab/nsp2	266	L266P	L446P	nonsyn	cTt	cCt	281	278	0.989324	1601-1603
ORF1ab/nsp2	266	L266P	L446P	nonsyn	cTT	cCG	281	2	0.00711744	1601-1603
ORF1ab/nsp2	266	L266P	L446P	nonsyn	cTT	cCC	281	1	0.00355872	1601-1603
ORF1ab/nsp2	266	L266R	L446R	nonsyn	cTt	cGt	113	112	0.99115	1601-1603
ORF1ab/nsp2	266	L266R	L446R	nonsyn	cTT	cGG	113	1	0.00884956	1601-1603
ORF1ab/nsp2	266	L266I	L446I	nonsyn	Ctt	Att	108	108	1	1601-1603
ORF1ab/nsp2	266	L266H	L446H	nonsyn	cTt	cAt	94	94	1	1601-1603
ORF1ab/nsp2	266	L266S	L446S	nonsyn	CTt	TCt	10	8	0.8	1601-1603
ORF1ab/nsp2	266	L266S	L446S	nonsyn	CTt	AGt	10	1	0.1	1601-1603
ORF1ab/nsp2	266	L266S	L446S	nonsyn	CTT	TCG	10	1	0.1	1601-1603
ORF1ab/nsp2	266	L266del1	L446del1	del	cTt	c-t	7	4	0.571429	1601-1603
ORF1ab/nsp2	266	L266del1	L446del1	del	Ctt	-tt	7	1	0.142857	1601-1603
ORF1ab/nsp2	266	L266del1	L446del1	del	CtT	-tC	7	1	0.142857	1601-1603
ORF1ab/nsp2	266	L266del1	L446del1	del	CtT	-tA	7	1	0.142857	1601-1603
ORF1ab/nsp2	266	L266V	L446V	nonsyn	Ctt	Gtt	6	6	1	1601-1603
ORF1ab/nsp2	266	L266del2	L446del2	del	CTt	--t	3	2	0.666667	1601-1603
ORF1ab/nsp2	266	L266del2	L446del2	del	cTT	c--	3	1	0.333333	1601-1603
ORF1ab/nsp2	266	L266E	L446E	nonsyn	CTT	GAA	2	2	1	1601-1603
ORF1ab/nsp2	266	L266G	L446G	nonsyn	CTt	GGt	1	1	1	1601-1603
ORF1ab/nsp2	266	L266D	L446D	nonsyn	CTt	GAt	1	1	1	1601-1603
ORF1ab/nsp2	266	L266N	L446N	nonsyn	CTt	AAt	1	1	1	1601-1603
ORF1ab/nsp2	266	L266A	L446A	nonsyn	CTt	GCt	1	1	1	1601-1603
ORF1ab/nsp2	266	L266Q	L446Q	nonsyn	cTT	cAG	1	1	1	1601-1603

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1913	1915	All	0.000366
ORF1ab/nsp2	266	L266F	CtT	TtC	2	1915	All	0
ORF1ab/nsp2	266	L266del	CTT	---	1102	1102	All	0.000211
ORF1ab/nsp2	266	L266L	ctT	ctC	234	442	All	0.000045
ORF1ab/nsp2	266	L266L	ctT	ctA	202	442	All	0.000039
ORF1ab/nsp2	266	L266L	ctT	ctG	6	442	All	0.000001
ORF1ab/nsp2	266	L266P	cTt	cCt	278	281	All	0.000053
ORF1ab/nsp2	266	L266P	cTT	cCG	2	281	All	0
ORF1ab/nsp2	266	L266P	cTT	cCC	1	281	All	0
ORF1ab/nsp2	266	L266F	Ctt	Ttt	264	264	L.3	0.93617
ORF1ab/nsp2	266	L266F	Ctt	Ttt	247	247	B.1.1.7	0.000221
ORF1ab/nsp2	266	L266del	CTT	---	208	208	B.1.1.191	0.990476
ORF1ab/nsp2	266	L266del	CTT	---	164	164	B.1.1.7	0.000147
ORF1ab/nsp2	266	L266del	CTT	---	164	164	B.1.573	1
ORF1ab/nsp2	266	L266F	Ctt	Ttt	159	160	AY.4	0.000247
ORF1ab/nsp2	266	L266F	CtT	TtC	1	160	AY.4	0.000002
ORF1ab/nsp2	266	L266P	cTt	cCt	135	135	B.1.1.7	0.000121
ORF1ab/nsp2	266	L266F	Ctt	Ttt	115	115	AY.3.1	0.009805
ORF1ab/nsp2	266	L266R	cTt	cGt	112	113	All	0.000021
ORF1ab/nsp2	266	L266R	cTT	cGG	1	113	All	0
ORF1ab/nsp2	266	L266I	Ctt	Att	108	108	All	0.000021
ORF1ab/nsp2	266	L266del	CTT	---	101	101	AY.4	0.000157
ORF1ab/nsp2	266	L266F	Ctt	Ttt	98	98	B.1.617.2	0.000369
ORF1ab/nsp2	266	L266H	cTt	cAt	94	94	All	0.000018
ORF1ab/nsp2	266	L266F	Ctt	Ttt	94	94	B.1.517	0.040137
ORF1ab/nsp2	266	L266F	Ctt	Ttt	90	90	B.1.2	0.000792
ORF1ab/nsp2	266	L266L	ctT	ctA	89	89	P.1.14	0.004254
ORF1ab/nsp2	266	L266del	CTT	---	77	77	AY.103	0.000478
ORF1ab/nsp2	266	L266L	ctT	ctC	76	76	B.1.160	0.00237
ORF1ab/nsp2	266	L266R	cTt	cGt	58	58	B.1.1.7	0.000052
ORF1ab/nsp2	266	L266L	ctT	ctA	32	55	B.1.1.7	0.000029
ORF1ab/nsp2	266	L266L	ctT	ctC	23	55	B.1.1.7	0.000021
ORF1ab/nsp2	266	L266P	cTt	cCt	54	54	AY.44	0.000329
ORF1ab/nsp2	266	L266I	Ctt	Att	53	53	B.1.600	0.309942
ORF1ab/nsp2	266	L266del	CTT	---	49	49	AN.1	0.98
ORF1ab/nsp2	266	L266F	Ctt	Ttt	43	43	AY.25	0.000259
ORF1ab/nsp2	266	L266R	cTt	cGt	41	41	AY.4	0.000064
ORF1ab/nsp2	266	L266H	cTt	cAt	34	34	AY.4	0.000053
ORF1ab/nsp2	266	L266del	CTT	---	34	34	B.1.1	0.000617
ORF1ab/nsp2	266	L266F	Ctt	Ttt	33	33	AY.43	0.000146
ORF1ab/nsp2	266	L266F	Ctt	Ttt	31	31	AY.94	0.013723
ORF1ab/nsp2	266	L266P	cTt	cCt	31	31	B.1.617.2	0.000117
ORF1ab/nsp2	266	L266del	CTT	---	30	30	AY.25	0.00018
ORF1ab/nsp2	266	L266F	Ctt	Ttt	30	30	B.1.1.176	0.013181
ORF1ab/nsp2	266	L266L	ctT	ctA	30	30	B.1.526	0.000705
ORF1ab/nsp2	266	L266F	Ctt	Ttt	29	29	B.1.177	0.000382
ORF1ab/nsp2	266	L266F	Ctt	Ttt	25	26	AY.102	0.000663
ORF1ab/nsp2	266	L266F	CtT	TtC	1	26	AY.102	0.000027
ORF1ab/nsp2	266	L266F	Ctt	Ttt	26	26	AY.44	0.000158
ORF1ab/nsp2	266	L266F	Ctt	Ttt	26	26	P.1	0.00041
ORF1ab/nsp2	266	L266F	Ctt	Ttt	25	25	B.1.351	0.000743
ORF1ab/nsp2	266	L266F	Ctt	Ttt	23	23	AY.85	0.009825
ORF1ab/nsp2	266	L266L	ctT	ctA	22	22	AY.3.1	0.001876
ORF1ab/nsp2	266	L266del	CTT	---	21	21	B.1	0.000192
ORF1ab/nsp2	266	L266F	Ctt	Ttt	21	21	B.1	0.000192
ORF1ab/nsp2	266	L266L	ctT	ctC	18	20	AY.4	0.000028
ORF1ab/nsp2	266	L266L	ctT	ctA	2	20	AY.4	0.000003
ORF1ab/nsp2	266	L266F	Ctt	Ttt	19	19	B.1.1.192	0.04388
ORF1ab/nsp2	266	L266F	Ctt	Ttt	19	19	B.1.1.317	0.007822
ORF1ab/nsp2	266	L266F	Ctt	Ttt	19	19	B.1.265	0.024142
ORF1ab/nsp2	266	L266F	Ctt	Ttt	19	19	B.1.427	0.000959
ORF1ab/nsp2	266	L266F	Ctt	Ttt	18	18	AY.100	0.000828
ORF1ab/nsp2	266	L266F	Ctt	Ttt	18	18	AY.62	0.007843
ORF1ab/nsp2	266	L266F	Ctt	Ttt	18	18	B.1.637	0.001315
ORF1ab/nsp2	266	L266L	ctT	ctC	16	17	AY.44	0.000097
ORF1ab/nsp2	266	L266L	ctT	ctA	1	17	AY.44	0.000006
ORF1ab/nsp2	266	L266L	ctT	ctC	16	16	B.1.221	0.001137
ORF1ab/nsp2	266	L266L	ctT	ctC	15	15	B.1.1	0.000272
ORF1ab/nsp2	266	L266L	ctT	ctA	15	15	B.1.1.214	0.000832
ORF1ab/nsp2	266	L266F	Ctt	Ttt	15	15	B.1.1.464	0.022091
ORF1ab/nsp2	266	L266F	Ctt	Ttt	15	15	B.1.1.519	0.000596
ORF1ab/nsp2	266	L266L	ctT	ctC	15	15	B.1.617.2	0.000056
ORF1ab/nsp2	266	L266del	CTT	---	14	14	B.1.36.18	0.005882
ORF1ab/nsp2	266	L266F	Ctt	Ttt	13	13	AY.103	0.000081
ORF1ab/nsp2	266	L266F	Ctt	Ttt	13	13	AY.3	0.000129
ORF1ab/nsp2	266	L266F	Ctt	Ttt	13	13	B.1.1	0.000236
ORF1ab/nsp2	266	L266F	Ctt	Ttt	12	12	B.1.258	0.000799
ORF1ab/nsp2	266	L266del	CTT	---	12	12	P.1	0.000189
ORF1ab/nsp2	266	L266del	CTT	---	11	11	AY.43	0.000049
ORF1ab/nsp2	266	L266F	Ctt	Ttt	11	11	B.1.526	0.000259
ORF1ab/nsp2	266	L266del	CTT	---	11	11	B.1.617.2	0.000041
ORF1ab/nsp2	266	L266F	Ctt	Ttt	11	11	B.1.630	0.057592
ORF1ab/nsp2	266	L266S	CTt	TCt	8	10	All	0.000002
ORF1ab/nsp2	266	L266S	CTT	TCG	1	10	All	0
ORF1ab/nsp2	266	L266S	CTt	AGt	1	10	All	0
ORF1ab/nsp2	266	L266L	ctT	ctC	10	10	AY.103	0.000062
ORF1ab/nsp2	266	L266I	Ctt	Att	10	10	AY.44	0.000061
ORF1ab/nsp2	266	L266del	CTT	---	10	10	AY.44	0.000061
ORF1ab/nsp2	266	L266del	CTT	---	10	10	B.1.160	0.000312
ORF1ab/nsp2	266	L266del	CTT	---	10	10	B.1.2	0.000088
ORF1ab/nsp2	266	L266F	Ctt	Ttt	9	9	AY.20	0.00035
ORF1ab/nsp2	266	L266F	Ctt	Ttt	9	9	AY.5	0.000186
ORF1ab/nsp2	266	L266F	Ctt	Ttt	9	9	C.37	0.001045
ORF1ab/nsp2	266	L266P	cTt	cCt	8	8	AY.103	0.00005
ORF1ab/nsp2	266	L266F	Ctt	Ttt	8	8	AY.47	0.000249
ORF1ab/nsp2	266	L266L	ctT	ctC	5	8	B.1	0.000046
ORF1ab/nsp2	266	L266L	ctT	ctA	3	8	B.1	0.000027
ORF1ab/nsp2	266	L266del	CTT	---	8	8	B.1.1.519	0.000318
ORF1ab/nsp2	266	L266F	Ctt	Ttt	8	8	B.1.429	0.000188
ORF1ab/nsp2	266	L266del1	cTt	c-t	4	7	All	0.000001
ORF1ab/nsp2	266	L266del1	CtT	-tC	1	7	All	0
ORF1ab/nsp2	266	L266del1	CtT	-tA	1	7	All	0
ORF1ab/nsp2	266	L266del1	Ctt	-tt	1	7	All	0
ORF1ab/nsp2	266	L266H	cTt	cAt	7	7	AY.25	0.000042
ORF1ab/nsp2	266	L266del	CTT	---	7	7	AY.4.5	0.000752
ORF1ab/nsp2	266	L266F	Ctt	Ttt	7	7	AY.7	0.001372
ORF1ab/nsp2	266	L266F	Ctt	Ttt	7	7	B.1.1.169	0.127273
ORF1ab/nsp2	266	L266del	CTT	---	7	7	B.1.1.17	0.116667
ORF1ab/nsp2	266	L266F	Ctt	Ttt	7	7	B.1.240	0.001509
ORF1ab/nsp2	266	L266F	Ctt	Ttt	7	7	C.16	0.007423
ORF1ab/nsp2	266	L266V	Ctt	Gtt	6	6	All	0.000001
ORF1ab/nsp2	266	L266F	Ctt	Ttt	6	6	AY.119	0.000212
ORF1ab/nsp2	266	L266P	cTt	cCt	6	6	AY.4	0.000009
ORF1ab/nsp2	266	L266P	cTt	cCt	6	6	AY.43	0.000027
ORF1ab/nsp2	266	L266F	Ctt	Ttt	6	6	AY.5.3	0.002024
ORF1ab/nsp2	266	L266H	cTt	cAt	6	6	AY.9.1	0.000502
ORF1ab/nsp2	266	L266del	CTT	---	6	6	B.1.1.374	0.014252
ORF1ab/nsp2	266	L266del	CTT	---	6	6	B.1.177	0.000079
ORF1ab/nsp2	266	L266F	Ctt	Ttt	6	6	B.1.3	0.015707
ORF1ab/nsp2	266	L266L	ctT	ctG	6	6	B.1.495	0.054545
ORF1ab/nsp2	266	L266F	Ctt	Ttt	6	6	B.1.561	0.002382
ORF1ab/nsp2	266	L266H	cTt	cAt	6	6	P.1	0.000095
ORF1ab/nsp2	266	L266F	Ctt	Ttt	6	6	P.1.14	0.000287
ORF1ab/nsp2	266	L266L	ctT	ctC	5	5	AY.100	0.00023
ORF1ab/nsp2	266	L266I	Ctt	Att	5	5	AY.12	0.00158
ORF1ab/nsp2	266	L266F	Ctt	Ttt	5	5	AY.29	0.000079
ORF1ab/nsp2	266	L266F	Ctt	Ttt	5	5	AY.33	0.000334
ORF1ab/nsp2	266	L266F	Ctt	Ttt	5	5	AY.4.2	0.000108
ORF1ab/nsp2	266	L266I	Ctt	Att	5	5	AY.46.4	0.000823
ORF1ab/nsp2	266	L266del	CTT	---	5	5	AY.5.3	0.001687
ORF1ab/nsp2	266	L266F	Ctt	Ttt	5	5	AY.6	0.000206
ORF1ab/nsp2	266	L266L	ctT	ctC	5	5	AY.90	0.003422
ORF1ab/nsp2	266	L266P	cTt	cCt	5	5	AY.98	0.000395
ORF1ab/nsp2	266	L266del	CTT	---	5	5	B.1.1.318	0.001509
ORF1ab/nsp2	266	L266del	CTT	---	5	5	B.1.1.37	0.000964
ORF1ab/nsp2	266	L266del	CTT	---	5	5	B.1.221	0.000355
ORF1ab/nsp2	266	L266F	Ctt	Ttt	5	5	B.1.221	0.000355
ORF1ab/nsp2	266	L266del	CTT	---	5	5	B.1.234	0.00066
ORF1ab/nsp2	266	L266H	cTt	cAt	5	5	B.1.243	0.000348
ORF1ab/nsp2	266	L266del	CTT	---	5	5	B.1.36.38	0.00821
ORF1ab/nsp2	266	L266F	Ctt	Ttt	5	5	B.1.497	0.001574
ORF1ab/nsp2	266	L266H	cTt	cAt	5	5	B.1.526	0.000118
ORF1ab/nsp2	266	L266I	Ctt	Att	4	4	AY.103	0.000025
ORF1ab/nsp2	266	L266F	Ctt	Ttt	4	4	AY.23	0.000279
ORF1ab/nsp2	266	L266L	ctT	ctC	2	4	AY.25	0.000012
ORF1ab/nsp2	266	L266L	ctT	ctA	2	4	AY.25	0.000012
ORF1ab/nsp2	266	L266del	CTT	---	4	4	AY.29	0.000063
ORF1ab/nsp2	266	L266P	cTt	cCt	4	4	AY.3	0.00004
ORF1ab/nsp2	266	L266H	cTt	cAt	4	4	AY.3	0.00004
ORF1ab/nsp2	266	L266del	CTT	---	4	4	AY.33	0.000267
ORF1ab/nsp2	266	L266R	cTt	cGt	3	4	AY.39	0.000074
ORF1ab/nsp2	266	L266R	cTT	cGG	1	4	AY.39	0.000025
ORF1ab/nsp2	266	L266del	CTT	---	4	4	AY.4.2.1	0.000596
ORF1ab/nsp2	266	L266F	Ctt	Ttt	4	4	AY.45	0.000487
ORF1ab/nsp2	266	L266F	Ctt	Ttt	4	4	AY.46.5	0.000794
ORF1ab/nsp2	266	L266del	CTT	---	4	4	AY.9.1	0.000335
ORF1ab/nsp2	266	L266del	CTT	---	4	4	AY.9.2	0.000147
ORF1ab/nsp2	266	L266P	cTt	cCt	4	4	B.1.1.318	0.001207
ORF1ab/nsp2	266	L266del	CTT	---	4	4	B.1.1.33	0.001684
ORF1ab/nsp2	266	L266F	Ctt	Ttt	4	4	B.1.160	0.000125
ORF1ab/nsp2	266	L266F	Ctt	Ttt	4	4	B.1.177.6	0.003906
ORF1ab/nsp2	266	L266F	Ctt	Ttt	4	4	B.1.311	0.001098
ORF1ab/nsp2	266	L266del	CTT	---	4	4	B.1.526	0.000094
ORF1ab/nsp2	266	L266F	Ctt	Ttt	4	4	P.2	0.000747
ORF1ab/nsp2	266	L266S	CTt	TCt	2	3		0.111111
ORF1ab/nsp2	266	L266S	CTt	AGt	1	3		0.055556
ORF1ab/nsp2	266	L266del	CTT	---	3	3	A.5	0.005769
ORF1ab/nsp2	266	L266del2	CTt	--t	2	3	All	0
ORF1ab/nsp2	266	L266del2	cTT	c--	1	3	All	0
ORF1ab/nsp2	266	L266F	Ctt	Ttt	3	3	AY.105	0.001929
ORF1ab/nsp2	266	L266del	CTT	---	3	3	AY.120	0.000112
ORF1ab/nsp2	266	L266F	Ctt	Ttt	3	3	AY.34	0.000291
ORF1ab/nsp2	266	L266F	Ctt	Ttt	3	3	AY.39	0.000074
ORF1ab/nsp2	266	L266I	Ctt	Att	3	3	AY.4	0.000005
ORF1ab/nsp2	266	L266F	Ctt	Ttt	3	3	AY.4.5	0.000322
ORF1ab/nsp2	266	L266del	CTT	---	3	3	AY.7	0.000588
ORF1ab/nsp2	266	L266I	Ctt	Att	3	3	AY.74	0.000347
ORF1ab/nsp2	266	L266P	cTt	cCt	3	3	B.1	0.000027
ORF1ab/nsp2	266	L266F	Ctt	Ttt	3	3	B.1.1.1	0.00098
ORF1ab/nsp2	266	L266del	CTT	---	3	3	B.1.1.194	0.014851
ORF1ab/nsp2	266	L266del	CTT	---	3	3	B.1.1.348	0.002389
ORF1ab/nsp2	266	L266I	Ctt	Att	3	3	B.1.1.7	0.000003
ORF1ab/nsp2	266	L266I	Ctt	Att	3	3	B.1.2	0.000026
ORF1ab/nsp2	266	L266F	Ctt	Ttt	3	3	B.1.36.8	0.003
ORF1ab/nsp2	266	L266P	cTt	cCt	3	3	B.1.526	0.000071
ORF1ab/nsp2	266	L266F	Ctt	Ttt	3	3	B.1.621	0.000266
ORF1ab/nsp2	266	L266F	Ctt	Ttt	3	3	D.2	0.000225
ORF1ab/nsp2	266	L266P	cTt	cCt	2	2		0.111111
ORF1ab/nsp2	266	L266L	ctT	ctC	2	2		0.111111
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2		0.111111
ORF1ab/nsp2	266	L266V	Ctt	Gtt	2	2		0.111111
ORF1ab/nsp2	266	L266del	CTT	---	2	2	A	0.000774
ORF1ab/nsp2	266	L266E	CTT	GAA	2	2	All	0
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	AY.106	0.00067
ORF1ab/nsp2	266	L266P	cTt	cCt	2	2	AY.116	0.000574
ORF1ab/nsp2	266	L266I	Ctt	Att	2	2	AY.118	0.000125
ORF1ab/nsp2	266	L266del	CTT	---	2	2	AY.118	0.000125
ORF1ab/nsp2	266	L266del	CTT	---	2	2	AY.120.2	0.002571
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	AY.19	0.002281
ORF1ab/nsp2	266	L266L	ctT	ctC	2	2	AY.20	0.000078
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	AY.26	0.000057
ORF1ab/nsp2	266	L266del	CTT	---	2	2	AY.3	0.00002
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	AY.36	0.000296
ORF1ab/nsp2	266	L266del	CTT	---	2	2	AY.39	0.000049
ORF1ab/nsp2	266	L266del	CTT	---	2	2	AY.42	0.00008
ORF1ab/nsp2	266	L266H	cTt	cAt	2	2	AY.43	0.000009
ORF1ab/nsp2	266	L266S	CTt	TCt	2	2	AY.44	0.000012
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	AY.46	0.000208
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	AY.46.3	0.001867
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	AY.46.4	0.000329
ORF1ab/nsp2	266	L266H	cTt	cAt	2	2	AY.47	0.000062
ORF1ab/nsp2	266	L266I	Ctt	Att	2	2	AY.5.3	0.000675
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	AY.57	0.001312
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	AY.58	0.001815
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	AY.69	0.000373
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	AY.92	0.000575
ORF1ab/nsp2	266	L266del	CTT	---	2	2	AY.98.1	0.000097
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	B	0.000256
ORF1ab/nsp2	266	L266H	cTt	cAt	2	2	B.1	0.000018
ORF1ab/nsp2	266	L266del1	Ctt	-tt	1	2	B.1	0.000009
ORF1ab/nsp2	266	L266del1	CtT	-tA	1	2	B.1	0.000009
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	B.1.1.10	0.00223
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	B.1.1.222	0.000408
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	B.1.1.28	0.000622
ORF1ab/nsp2	266	L266del	CTT	---	2	2	B.1.1.284	0.000215
ORF1ab/nsp2	266	L266L	ctT	ctC	2	2	B.1.1.391	0.017094
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	B.1.1.409	0.005666
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	B.1.1.46	0.008734
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	B.1.1.51	0.003436
ORF1ab/nsp2	266	L266V	Ctt	Gtt	2	2	B.1.177	0.000026
ORF1ab/nsp2	266	L266L	ctT	ctC	2	2	B.1.177	0.000026
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	B.1.177.44	0.001038
ORF1ab/nsp2	266	L266H	cTt	cAt	2	2	B.1.2	0.000018
ORF1ab/nsp2	266	L266del	CTT	---	2	2	B.1.206	0.001631
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	B.1.23	0.012121
ORF1ab/nsp2	266	L266L	ctT	ctC	2	2	B.1.234	0.000264
ORF1ab/nsp2	266	L266del	CTT	---	2	2	B.1.237	0.00995
ORF1ab/nsp2	266	L266del	CTT	---	2	2	B.1.243	0.000139
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	B.1.258.17	0.000208
ORF1ab/nsp2	266	L266del	CTT	---	2	2	B.1.351	0.000059
ORF1ab/nsp2	266	L266del	CTT	---	2	2	B.1.351.2	0.000605
ORF1ab/nsp2	266	L266H	cTt	cAt	2	2	B.1.36.29	0.001035
ORF1ab/nsp2	266	L266del	CTT	---	2	2	B.1.36.8	0.002
ORF1ab/nsp2	266	L266del	CTT	---	2	2	B.1.369	0.00057
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	B.1.400	0.000858
ORF1ab/nsp2	266	L266F	Ctt	Ttt	2	2	B.1.422	0.001625
ORF1ab/nsp2	266	L266del	CTT	---	2	2	B.1.520	0.043478
ORF1ab/nsp2	266	L266I	Ctt	Att	2	2	B.1.617.2	0.000008
ORF1ab/nsp2	266	L266del1	cTt	c-t	1	2	B.1.617.2	0.000004
ORF1ab/nsp2	266	L266del1	CtT	-tC	1	2	B.1.617.2	0.000004
ORF1ab/nsp2	266	L266del	CTT	---	2	2	N.6	0.014184
ORF1ab/nsp2	266	L266del	CTT	---	2	2	P.2	0.000373
ORF1ab/nsp2	266	L266H	cTt	cAt	1	1		0.055556
ORF1ab/nsp2	266	L266D	CTt	GAt	1	1		0.055556
ORF1ab/nsp2	266	L266N	CTt	AAt	1	1		0.055556
ORF1ab/nsp2	266	L266A	CTt	GCt	1	1		0.055556
ORF1ab/nsp2	266	L266R	cTt	cGt	1	1		0.055556
ORF1ab/nsp2	266	L266I	Ctt	Att	1	1		0.055556
ORF1ab/nsp2	266	L266G	CTt	GGt	1	1		0.055556
ORF1ab/nsp2	266	L266I	Ctt	Att	1	1	A	0.000387
ORF1ab/nsp2	266	L266L	ctT	ctA	1	1	A.2.2	0.001689
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	A.2.5	0.000499
ORF1ab/nsp2	266	L266P	cTt	cCt	1	1	A.2.5	0.000499
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	A.23.1	0.000704
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	AD.2	0.000219
ORF1ab/nsp2	266	L266D	CTt	GAt	1	1	All	0
ORF1ab/nsp2	266	L266G	CTt	GGt	1	1	All	0
ORF1ab/nsp2	266	L266Q	cTT	cAG	1	1	All	0
ORF1ab/nsp2	266	L266A	CTt	GCt	1	1	All	0
ORF1ab/nsp2	266	L266N	CTt	AAt	1	1	All	0
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	AY.10	0.00053
ORF1ab/nsp2	266	L266H	cTt	cAt	1	1	AY.102	0.000027
ORF1ab/nsp2	266	L266L	ctT	ctC	1	1	AY.102	0.000027
ORF1ab/nsp2	266	L266S	CTT	TCG	1	1	AY.103	0.000006
ORF1ab/nsp2	266	L266R	cTt	cGt	1	1	AY.103	0.000006
ORF1ab/nsp2	266	L266del	CTT	---	1	1	AY.105	0.000643
ORF1ab/nsp2	266	L266L	ctT	ctA	1	1	AY.110	0.000113
ORF1ab/nsp2	266	L266del	CTT	---	1	1	AY.116.1	0.000311
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	AY.117	0.000085
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	AY.118	0.000063
ORF1ab/nsp2	266	L266H	cTt	cAt	1	1	AY.120	0.000037
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	AY.121	0.000135
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	AY.13	0.000161
ORF1ab/nsp2	266	L266L	ctT	ctC	1	1	AY.14	0.000088
ORF1ab/nsp2	266	L266H	cTt	cAt	1	1	AY.20	0.000039
ORF1ab/nsp2	266	L266P	cTt	cCt	1	1	AY.23	0.00007
ORF1ab/nsp2	266	L266R	cTt	cGt	1	1	AY.23	0.00007
ORF1ab/nsp2	266	L266P	cTt	cCt	1	1	AY.25	0.000006
ORF1ab/nsp2	266	L266P	cTt	cCt	1	1	AY.26	0.000028
ORF1ab/nsp2	266	L266I	Ctt	Att	1	1	AY.29	0.000016
ORF1ab/nsp2	266	L266P	cTt	cCt	1	1	AY.29	0.000016
ORF1ab/nsp2	266	L266H	cTt	cAt	1	1	AY.30	0.000396
ORF1ab/nsp2	266	L266H	cTt	cAt	1	1	AY.34	0.000097
ORF1ab/nsp2	266	L266L	ctT	ctC	1	1	AY.36	0.000148
ORF1ab/nsp2	266	L266L	ctT	ctC	1	1	AY.38	0.000499
ORF1ab/nsp2	266	L266H	cTt	cAt	1	1	AY.39	0.000025
ORF1ab/nsp2	266	L266L	ctT	ctC	1	1	AY.39	0.000025
ORF1ab/nsp2	266	L266P	cTT	cCG	1	1	AY.39	0.000025
ORF1ab/nsp2	266	L266del	CTT	---	1	1	AY.4.2	0.000022
ORF1ab/nsp2	266	L266P	cTt	cCt	1	1	AY.4.2	0.000022
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	AY.4.3	0.000842
ORF1ab/nsp2	266	L266R	cTt	cGt	1	1	AY.42	0.00004
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	AY.42	0.00004
ORF1ab/nsp2	266	L266L	ctT	ctC	1	1	AY.42	0.00004
ORF1ab/nsp2	266	L266del1	cTt	c-t	1	1	AY.44	0.000006
ORF1ab/nsp2	266	L266L	ctT	ctC	1	1	AY.46.6	0.000072
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	AY.46.6	0.000072
ORF1ab/nsp2	266	L266L	ctT	ctA	1	1	AY.47	0.000031
ORF1ab/nsp2	266	L266R	cTt	cGt	1	1	AY.5	0.000021
ORF1ab/nsp2	266	L266P	cTt	cCt	1	1	AY.5	0.000021
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	AY.52	0.000814
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	AY.55	0.000917
ORF1ab/nsp2	266	L266del	CTT	---	1	1	AY.6	0.000041
ORF1ab/nsp2	266	L266H	cTt	cAt	1	1	AY.67	0.000464
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	AY.70	0.000209
ORF1ab/nsp2	266	L266del1	cTt	c-t	1	1	AY.71	0.000475
ORF1ab/nsp2	266	L266del	CTT	---	1	1	AY.71	0.000475
ORF1ab/nsp2	266	L266L	ctT	ctC	1	1	AY.74	0.000116
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	AY.75	0.000056
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	AY.75.1	0.00018
ORF1ab/nsp2	266	L266L	ctT	ctC	1	1	AY.84	0.000437
ORF1ab/nsp2	266	L266del2	cTT	c--	1	1	AY.85	0.000427
ORF1ab/nsp2	266	L266del	CTT	---	1	1	AY.85	0.000427
ORF1ab/nsp2	266	L266Q	cTT	cAG	1	1	AY.85	0.000427
ORF1ab/nsp2	266	L266P	cTT	cCG	1	1	AY.85	0.000427
ORF1ab/nsp2	266	L266del	CTT	---	1	1	AY.9	0.000068
ORF1ab/nsp2	266	L266L	ctT	ctA	1	1	AY.9	0.000068
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	AY.9	0.000068
ORF1ab/nsp2	266	L266P	cTt	cCt	1	1	AY.9.1	0.000084
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	AY.9.2	0.000037
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	AY.91	0.00073
ORF1ab/nsp2	266	L266R	cTt	cGt	1	1	AY.91	0.00073
ORF1ab/nsp2	266	L266L	ctT	ctC	1	1	AY.94	0.000443
ORF1ab/nsp2	266	L266del	CTT	---	1	1	AY.98	0.000079
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	AY.98	0.000079
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	AY.99.2	0.000092
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	AZ.1	0.000867
ORF1ab/nsp2	266	L266I	Ctt	Att	1	1	AZ.1	0.000867
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	AZ.5	0.003509
ORF1ab/nsp2	266	L266I	Ctt	Att	1	1	B.1	0.000009
ORF1ab/nsp2	266	L266R	cTt	cGt	1	1	B.1	0.000009
ORF1ab/nsp2	266	L266S	CTt	TCt	1	1	B.1	0.000009
ORF1ab/nsp2	266	L266P	cTt	cCt	1	1	B.1.1	0.000018
ORF1ab/nsp2	266	L266H	cTt	cAt	1	1	B.1.1	0.000018
ORF1ab/nsp2	266	L266I	Ctt	Att	1	1	B.1.1	0.000018
ORF1ab/nsp2	266	L266S	CTt	TCt	1	1	B.1.1	0.000018
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.1.153	0.001095
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.1.200	0.007463
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.1.214	0.000055
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.1.216	0.00089
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.1.216	0.00089
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.1.28	0.000311
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.1.280	0.003086
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.1.304	0.002809
ORF1ab/nsp2	266	L266L	ctT	ctC	1	1	B.1.1.316	0.000925
ORF1ab/nsp2	266	L266I	Ctt	Att	1	1	B.1.1.317	0.000412
ORF1ab/nsp2	266	L266H	cTt	cAt	1	1	B.1.1.318	0.000302
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.1.33	0.000421
ORF1ab/nsp2	266	L266H	cTt	cAt	1	1	B.1.1.334	0.016393
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.1.335	0.012987
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.1.372	0.000689
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.1.408	0.027778
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.1.428	0.009434
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.1.433	0.001425
ORF1ab/nsp2	266	L266I	Ctt	Att	1	1	B.1.1.434	0.000349
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.1.448	0.002033
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.1.51	0.001718
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.1.54	0.003021
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.1.54	0.003021
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.1.62	0.027027
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.1.63	0.000386
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.1.63	0.000386
ORF1ab/nsp2	266	L266del2	CTt	--t	1	1	B.1.1.7	0.000001
ORF1ab/nsp2	266	L266H	cTt	cAt	1	1	B.1.1.7	0.000001
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.1.70	0.000341
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.110.3	0.000718
ORF1ab/nsp2	266	L266I	Ctt	Att	1	1	B.1.160	0.000031
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.160.16	0.000929
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.173	0.026316
ORF1ab/nsp2	266	L266P	cTt	cCt	1	1	B.1.177	0.000013
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.177.12	0.000152
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.177.21	0.000076
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.177.33	0.001645
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.177.56	0.000668
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.177.57	0.000281
ORF1ab/nsp2	266	L266P	cTt	cCt	1	1	B.1.177.60	0.000218
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.177.7	0.000165
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.177.72	0.00339
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.177.81	0.000189
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.189	0.004292
ORF1ab/nsp2	266	L266H	cTt	cAt	1	1	B.1.199	0.004132
ORF1ab/nsp2	266	L266P	cTT	cCC	1	1	B.1.2	0.000009
ORF1ab/nsp2	266	L266S	CTt	TCt	1	1	B.1.2	0.000009
ORF1ab/nsp2	266	L266L	ctT	ctC	1	1	B.1.2	0.000009
ORF1ab/nsp2	266	L266E	CTT	GAA	1	1	B.1.206	0.000816
ORF1ab/nsp2	266	L266del1	cTt	c-t	1	1	B.1.206	0.000816
ORF1ab/nsp2	266	L266P	cTt	cCt	1	1	B.1.210	0.002132
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.214	0.003663
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.218	0.005155
ORF1ab/nsp2	266	L266V	Ctt	Gtt	1	1	B.1.221	0.000071
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.221.1	0.002907
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.232	0.000537
ORF1ab/nsp2	266	L266H	cTt	cAt	1	1	B.1.234	0.000132
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.243	0.00007
ORF1ab/nsp2	266	L266S	CTt	TCt	1	1	B.1.258	0.000067
ORF1ab/nsp2	266	L266P	cTt	cCt	1	1	B.1.258	0.000067
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.258.17	0.000104
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.258.24	0.010753
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.311	0.000275
ORF1ab/nsp2	266	L266P	cTt	cCt	1	1	B.1.340	0.004292
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.350	0.002933
ORF1ab/nsp2	266	L266I	Ctt	Att	1	1	B.1.351	0.00003
ORF1ab/nsp2	266	L266L	ctT	ctC	1	1	B.1.351	0.00003
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.351.3	0.000876
ORF1ab/nsp2	266	L266L	ctT	ctC	1	1	B.1.36	0.000146
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.36.10	0.004785
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.36.16	0.001425
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.36.16	0.001425
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.36.25	0.002208
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.36.31	0.001751
ORF1ab/nsp2	266	L266L	ctT	ctC	1	1	B.1.367	0.000792
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.367	0.000792
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.371	0.001122
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.404	0.001302
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.409	0.000781
ORF1ab/nsp2	266	L266I	Ctt	Att	1	1	B.1.429	0.000024
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.438.1	0.000107
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.438.1	0.000107
ORF1ab/nsp2	266	L266I	Ctt	Att	1	1	B.1.446	0.02
ORF1ab/nsp2	266	L266L	ctT	ctC	1	1	B.1.459	0.004082
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.466.2	0.000391
ORF1ab/nsp2	266	L266H	cTt	cAt	1	1	B.1.466.2	0.000391
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.470	0.001404
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.480	0.002488
ORF1ab/nsp2	266	L266R	cTt	cGt	1	1	B.1.533	0.009615
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.560	0.00463
ORF1ab/nsp2	266	L266del	CTT	---	1	1	B.1.561	0.000397
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.596	0.000087
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.597	0.00463
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.609	0.000479
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.617.1	0.000129
ORF1ab/nsp2	266	L266R	cTt	cGt	1	1	B.1.617.2	0.000004
ORF1ab/nsp2	266	L266H	cTt	cAt	1	1	B.1.617.2	0.000004
ORF1ab/nsp2	266	L266del2	CTt	--t	1	1	B.1.617.2	0.000004
ORF1ab/nsp2	266	L266H	cTt	cAt	1	1	B.1.621.1	0.000506
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.1.636	0.006711
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	B.40	0.000364
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	C.36	0.000911
ORF1ab/nsp2	266	L266L	ctT	ctA	1	1	C.37	0.000116
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	C.4	0.01
ORF1ab/nsp2	266	L266L	ctT	ctC	1	1	D.2	0.000075
ORF1ab/nsp2	266	L266E	CTT	GAA	1	1	P.1	0.000016
ORF1ab/nsp2	266	L266L	ctT	ctA	1	1	P.1	0.000016
ORF1ab/nsp2	266	L266R	cTt	cGt	1	1	P.1	0.000016
ORF1ab/nsp2	266	L266del	CTT	---	1	1	P.1.14	0.000048
ORF1ab/nsp2	266	L266L	ctT	ctC	1	1	P.1.16	0.000374
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	P.1.7	0.000319
ORF1ab/nsp2	266	L266I	Ctt	Att	1	1	P.6	0.003145
ORF1ab/nsp2	266	L266del	CTT	---	1	1	Q.1	0.000126
ORF1ab/nsp2	266	L266F	Ctt	Ttt	1	1	Q.1	0.000126
ORF1ab/nsp2	266	L266V	Ctt	Gtt	1	1	R.1	0.00009
ORF1ab/nsp2	266	L266P	cTt	cCt	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.