CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp2 | 266 | L266F | L446F | nonsyn | Ctt | Ttt | 1915 | 1913 | 0.998956 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266F | L446F | nonsyn | CtT | TtC | 1915 | 2 | 0.00104439 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266del | L446del | del | CTT | --- | 1102 | 1102 | 1 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266L | L446L | syn | ctT | ctC | 442 | 234 | 0.529412 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266L | L446L | syn | ctT | ctA | 442 | 202 | 0.457014 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266L | L446L | syn | ctT | ctG | 442 | 6 | 0.0135747 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266P | L446P | nonsyn | cTt | cCt | 281 | 278 | 0.989324 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266P | L446P | nonsyn | cTT | cCG | 281 | 2 | 0.00711744 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266P | L446P | nonsyn | cTT | cCC | 281 | 1 | 0.00355872 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266R | L446R | nonsyn | cTt | cGt | 113 | 112 | 0.99115 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266R | L446R | nonsyn | cTT | cGG | 113 | 1 | 0.00884956 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266I | L446I | nonsyn | Ctt | Att | 108 | 108 | 1 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266H | L446H | nonsyn | cTt | cAt | 94 | 94 | 1 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266S | L446S | nonsyn | CTt | TCt | 10 | 8 | 0.8 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266S | L446S | nonsyn | CTt | AGt | 10 | 1 | 0.1 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266S | L446S | nonsyn | CTT | TCG | 10 | 1 | 0.1 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266del1 | L446del1 | del | cTt | c-t | 7 | 4 | 0.571429 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266del1 | L446del1 | del | Ctt | -tt | 7 | 1 | 0.142857 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266del1 | L446del1 | del | CtT | -tC | 7 | 1 | 0.142857 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266del1 | L446del1 | del | CtT | -tA | 7 | 1 | 0.142857 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266V | L446V | nonsyn | Ctt | Gtt | 6 | 6 | 1 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266del2 | L446del2 | del | CTt | --t | 3 | 2 | 0.666667 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266del2 | L446del2 | del | cTT | c-- | 3 | 1 | 0.333333 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266E | L446E | nonsyn | CTT | GAA | 2 | 2 | 1 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266G | L446G | nonsyn | CTt | GGt | 1 | 1 | 1 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266D | L446D | nonsyn | CTt | GAt | 1 | 1 | 1 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266N | L446N | nonsyn | CTt | AAt | 1 | 1 | 1 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266A | L446A | nonsyn | CTt | GCt | 1 | 1 | 1 | 1601-1603 |
ORF1ab/nsp2 | 266 | L266Q | L446Q | nonsyn | cTT | cAG | 1 | 1 | 1 | 1601-1603 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1913 | 1915 | All | 0.000366 |
ORF1ab/nsp2 | 266 | L266F | CtT | TtC | 2 | 1915 | All | 0 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1102 | 1102 | All | 0.000211 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 234 | 442 | All | 0.000045 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctA | 202 | 442 | All | 0.000039 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctG | 6 | 442 | All | 0.000001 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 278 | 281 | All | 0.000053 |
ORF1ab/nsp2 | 266 | L266P | cTT | cCG | 2 | 281 | All | 0 |
ORF1ab/nsp2 | 266 | L266P | cTT | cCC | 1 | 281 | All | 0 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 264 | 264 | L.3 | 0.93617 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 247 | 247 | B.1.1.7 | 0.000221 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 208 | 208 | B.1.1.191 | 0.990476 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 164 | 164 | B.1.1.7 | 0.000147 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 164 | 164 | B.1.573 | 1 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 159 | 160 | AY.4 | 0.000247 |
ORF1ab/nsp2 | 266 | L266F | CtT | TtC | 1 | 160 | AY.4 | 0.000002 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 135 | 135 | B.1.1.7 | 0.000121 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 115 | 115 | AY.3.1 | 0.009805 |
ORF1ab/nsp2 | 266 | L266R | cTt | cGt | 112 | 113 | All | 0.000021 |
ORF1ab/nsp2 | 266 | L266R | cTT | cGG | 1 | 113 | All | 0 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 108 | 108 | All | 0.000021 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 101 | 101 | AY.4 | 0.000157 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 98 | 98 | B.1.617.2 | 0.000369 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 94 | 94 | All | 0.000018 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 94 | 94 | B.1.517 | 0.040137 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 90 | 90 | B.1.2 | 0.000792 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctA | 89 | 89 | P.1.14 | 0.004254 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 77 | 77 | AY.103 | 0.000478 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 76 | 76 | B.1.160 | 0.00237 |
ORF1ab/nsp2 | 266 | L266R | cTt | cGt | 58 | 58 | B.1.1.7 | 0.000052 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctA | 32 | 55 | B.1.1.7 | 0.000029 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 23 | 55 | B.1.1.7 | 0.000021 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 54 | 54 | AY.44 | 0.000329 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 53 | 53 | B.1.600 | 0.309942 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 49 | 49 | AN.1 | 0.98 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 43 | 43 | AY.25 | 0.000259 |
ORF1ab/nsp2 | 266 | L266R | cTt | cGt | 41 | 41 | AY.4 | 0.000064 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 34 | 34 | AY.4 | 0.000053 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 34 | 34 | B.1.1 | 0.000617 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 33 | 33 | AY.43 | 0.000146 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 31 | 31 | AY.94 | 0.013723 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 31 | 31 | B.1.617.2 | 0.000117 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 30 | 30 | AY.25 | 0.00018 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 30 | 30 | B.1.1.176 | 0.013181 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctA | 30 | 30 | B.1.526 | 0.000705 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 29 | 29 | B.1.177 | 0.000382 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 25 | 26 | AY.102 | 0.000663 |
ORF1ab/nsp2 | 266 | L266F | CtT | TtC | 1 | 26 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 26 | 26 | AY.44 | 0.000158 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 26 | 26 | P.1 | 0.00041 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 25 | 25 | B.1.351 | 0.000743 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 23 | 23 | AY.85 | 0.009825 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctA | 22 | 22 | AY.3.1 | 0.001876 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 21 | 21 | B.1 | 0.000192 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 21 | 21 | B.1 | 0.000192 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 18 | 20 | AY.4 | 0.000028 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctA | 2 | 20 | AY.4 | 0.000003 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 19 | 19 | B.1.1.192 | 0.04388 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 19 | 19 | B.1.1.317 | 0.007822 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 19 | 19 | B.1.265 | 0.024142 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 19 | 19 | B.1.427 | 0.000959 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 18 | 18 | AY.100 | 0.000828 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 18 | 18 | AY.62 | 0.007843 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 18 | 18 | B.1.637 | 0.001315 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 16 | 17 | AY.44 | 0.000097 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctA | 1 | 17 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 16 | 16 | B.1.221 | 0.001137 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 15 | 15 | B.1.1 | 0.000272 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctA | 15 | 15 | B.1.1.214 | 0.000832 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 15 | 15 | B.1.1.464 | 0.022091 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 15 | 15 | B.1.1.519 | 0.000596 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 15 | 15 | B.1.617.2 | 0.000056 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 14 | 14 | B.1.36.18 | 0.005882 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 13 | 13 | AY.103 | 0.000081 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 13 | 13 | AY.3 | 0.000129 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 13 | 13 | B.1.1 | 0.000236 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 12 | 12 | B.1.258 | 0.000799 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 12 | 12 | P.1 | 0.000189 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 11 | 11 | AY.43 | 0.000049 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 11 | 11 | B.1.526 | 0.000259 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 11 | 11 | B.1.617.2 | 0.000041 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 11 | 11 | B.1.630 | 0.057592 |
ORF1ab/nsp2 | 266 | L266S | CTt | TCt | 8 | 10 | All | 0.000002 |
ORF1ab/nsp2 | 266 | L266S | CTT | TCG | 1 | 10 | All | 0 |
ORF1ab/nsp2 | 266 | L266S | CTt | AGt | 1 | 10 | All | 0 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 10 | 10 | AY.103 | 0.000062 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 10 | 10 | B.1.160 | 0.000312 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 10 | 10 | B.1.2 | 0.000088 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 9 | 9 | AY.20 | 0.00035 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 9 | 9 | AY.5 | 0.000186 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 9 | 9 | C.37 | 0.001045 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 8 | 8 | AY.103 | 0.00005 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 8 | 8 | AY.47 | 0.000249 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 5 | 8 | B.1 | 0.000046 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctA | 3 | 8 | B.1 | 0.000027 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 8 | 8 | B.1.1.519 | 0.000318 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 8 | 8 | B.1.429 | 0.000188 |
ORF1ab/nsp2 | 266 | L266del1 | cTt | c-t | 4 | 7 | All | 0.000001 |
ORF1ab/nsp2 | 266 | L266del1 | CtT | -tC | 1 | 7 | All | 0 |
ORF1ab/nsp2 | 266 | L266del1 | CtT | -tA | 1 | 7 | All | 0 |
ORF1ab/nsp2 | 266 | L266del1 | Ctt | -tt | 1 | 7 | All | 0 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 7 | 7 | AY.25 | 0.000042 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 7 | 7 | AY.4.5 | 0.000752 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 7 | 7 | AY.7 | 0.001372 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 7 | 7 | B.1.1.169 | 0.127273 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 7 | 7 | B.1.1.17 | 0.116667 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 7 | 7 | B.1.240 | 0.001509 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 7 | 7 | C.16 | 0.007423 |
ORF1ab/nsp2 | 266 | L266V | Ctt | Gtt | 6 | 6 | All | 0.000001 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 6 | 6 | AY.119 | 0.000212 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 6 | 6 | AY.4 | 0.000009 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 6 | 6 | AY.43 | 0.000027 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 6 | 6 | AY.5.3 | 0.002024 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 6 | 6 | AY.9.1 | 0.000502 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 6 | 6 | B.1.1.374 | 0.014252 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 6 | 6 | B.1.3 | 0.015707 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctG | 6 | 6 | B.1.495 | 0.054545 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 6 | 6 | B.1.561 | 0.002382 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 6 | 6 | P.1 | 0.000095 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 5 | 5 | AY.100 | 0.00023 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 5 | 5 | AY.12 | 0.00158 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 5 | 5 | AY.4.2 | 0.000108 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 5 | 5 | AY.46.4 | 0.000823 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 5 | 5 | AY.5.3 | 0.001687 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 5 | 5 | AY.90 | 0.003422 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 5 | 5 | AY.98 | 0.000395 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 5 | 5 | B.1.1.318 | 0.001509 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 5 | 5 | B.1.1.37 | 0.000964 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 5 | 5 | B.1.221 | 0.000355 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 5 | 5 | B.1.234 | 0.00066 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 5 | 5 | B.1.243 | 0.000348 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 5 | 5 | B.1.36.38 | 0.00821 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 5 | 5 | B.1.497 | 0.001574 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 5 | 5 | B.1.526 | 0.000118 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 4 | 4 | AY.103 | 0.000025 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 2 | 4 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctA | 2 | 4 | AY.25 | 0.000012 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 4 | 4 | AY.29 | 0.000063 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 4 | 4 | AY.3 | 0.00004 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 4 | 4 | AY.33 | 0.000267 |
ORF1ab/nsp2 | 266 | L266R | cTt | cGt | 3 | 4 | AY.39 | 0.000074 |
ORF1ab/nsp2 | 266 | L266R | cTT | cGG | 1 | 4 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 4 | 4 | AY.4.2.1 | 0.000596 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 4 | 4 | AY.46.5 | 0.000794 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 4 | 4 | AY.9.1 | 0.000335 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 4 | 4 | B.1.1.318 | 0.001207 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 4 | 4 | B.1.160 | 0.000125 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 4 | 4 | B.1.177.6 | 0.003906 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp2 | 266 | L266S | CTt | TCt | 2 | 3 | 0.111111 | |
ORF1ab/nsp2 | 266 | L266S | CTt | AGt | 1 | 3 | 0.055556 | |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 3 | 3 | A.5 | 0.005769 |
ORF1ab/nsp2 | 266 | L266del2 | CTt | --t | 2 | 3 | All | 0 |
ORF1ab/nsp2 | 266 | L266del2 | cTT | c-- | 1 | 3 | All | 0 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 3 | 3 | AY.105 | 0.001929 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 3 | 3 | AY.39 | 0.000074 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 3 | 3 | AY.4 | 0.000005 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 3 | 3 | AY.4.5 | 0.000322 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 3 | 3 | AY.7 | 0.000588 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 3 | 3 | B.1 | 0.000027 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 3 | 3 | B.1.1.1 | 0.00098 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 3 | 3 | B.1.1.194 | 0.014851 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 3 | 3 | B.1.1.348 | 0.002389 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 3 | 3 | B.1.1.7 | 0.000003 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 3 | 3 | B.1.621 | 0.000266 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 3 | 3 | D.2 | 0.000225 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 266 | L266V | Ctt | Gtt | 2 | 2 | 0.111111 | |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | A | 0.000774 |
ORF1ab/nsp2 | 266 | L266E | CTT | GAA | 2 | 2 | All | 0 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | AY.120.2 | 0.002571 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 2 | 2 | AY.20 | 0.000078 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | AY.26 | 0.000057 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | AY.3 | 0.00002 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | AY.36 | 0.000296 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | AY.39 | 0.000049 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | AY.42 | 0.00008 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 2 | 2 | AY.43 | 0.000009 |
ORF1ab/nsp2 | 266 | L266S | CTt | TCt | 2 | 2 | AY.44 | 0.000012 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | AY.46.3 | 0.001867 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 2 | 2 | AY.47 | 0.000062 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 2 | 2 | AY.5.3 | 0.000675 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | AY.57 | 0.001312 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | AY.58 | 0.001815 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | AY.69 | 0.000373 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | AY.98.1 | 0.000097 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 2 | 2 | B.1 | 0.000018 |
ORF1ab/nsp2 | 266 | L266del1 | Ctt | -tt | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp2 | 266 | L266del1 | CtT | -tA | 1 | 2 | B.1 | 0.000009 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B.1.1.28 | 0.000622 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 2 | 2 | B.1.1.391 | 0.017094 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B.1.1.46 | 0.008734 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B.1.1.51 | 0.003436 |
ORF1ab/nsp2 | 266 | L266V | Ctt | Gtt | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 2 | 2 | B.1.2 | 0.000018 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | B.1.206 | 0.001631 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B.1.23 | 0.012121 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 2 | 2 | B.1.234 | 0.000264 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | B.1.237 | 0.00995 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | B.1.243 | 0.000139 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B.1.258.17 | 0.000208 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | B.1.351 | 0.000059 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | B.1.36.8 | 0.002 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 2 | 2 | B.1.422 | 0.001625 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | B.1.520 | 0.043478 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 2 | 2 | B.1.617.2 | 0.000008 |
ORF1ab/nsp2 | 266 | L266del1 | cTt | c-t | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 266 | L266del1 | CtT | -tC | 1 | 2 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | N.6 | 0.014184 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 266 | L266D | CTt | GAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 266 | L266N | CTt | AAt | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 266 | L266A | CTt | GCt | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 266 | L266R | cTt | cGt | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 266 | L266G | CTt | GGt | 1 | 1 | 0.055556 | |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 1 | 1 | A | 0.000387 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctA | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | A.23.1 | 0.000704 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp2 | 266 | L266D | CTt | GAt | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 266 | L266G | CTt | GGt | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 266 | L266Q | cTT | cAG | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 266 | L266A | CTt | GCt | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 266 | L266N | CTt | AAt | 1 | 1 | All | 0 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.10 | 0.00053 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp2 | 266 | L266S | CTT | TCG | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 266 | L266R | cTt | cGt | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | AY.105 | 0.000643 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctA | 1 | 1 | AY.110 | 0.000113 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.13 | 0.000161 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 266 | L266R | cTt | cGt | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 1 | 1 | AY.25 | 0.000006 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 1 | 1 | AY.26 | 0.000028 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 1 | 1 | AY.29 | 0.000016 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 266 | L266P | cTT | cCG | 1 | 1 | AY.39 | 0.000025 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp2 | 266 | L266R | cTt | cGt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp2 | 266 | L266del1 | cTt | c-t | 1 | 1 | AY.44 | 0.000006 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctA | 1 | 1 | AY.47 | 0.000031 |
ORF1ab/nsp2 | 266 | L266R | cTt | cGt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 1 | 1 | AY.5 | 0.000021 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.52 | 0.000814 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp2 | 266 | L266del1 | cTt | c-t | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.75 | 0.000056 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp2 | 266 | L266del2 | cTT | c-- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 266 | L266Q | cTT | cAG | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 266 | L266P | cTT | cCG | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctA | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp2 | 266 | L266R | cTt | cGt | 1 | 1 | AY.91 | 0.00073 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | AZ.5 | 0.003509 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 266 | L266R | cTt | cGt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 266 | L266S | CTt | TCt | 1 | 1 | B.1 | 0.000009 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 266 | L266S | CTt | TCt | 1 | 1 | B.1.1 | 0.000018 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.1.200 | 0.007463 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.280 | 0.003086 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.304 | 0.002809 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 1 | 1 | B.1.1.316 | 0.000925 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 1 | 1 | B.1.1.334 | 0.016393 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.1.335 | 0.012987 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.408 | 0.027778 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.428 | 0.009434 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.433 | 0.001425 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.1.51 | 0.001718 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.62 | 0.027027 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp2 | 266 | L266del2 | CTt | --t | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 1 | 1 | B.1.1.7 | 0.000001 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 1 | 1 | B.1.160 | 0.000031 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.173 | 0.026316 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 1 | 1 | B.1.177 | 0.000013 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.177.33 | 0.001645 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 1 | 1 | B.1.177.60 | 0.000218 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.177.72 | 0.00339 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 1 | 1 | B.1.199 | 0.004132 |
ORF1ab/nsp2 | 266 | L266P | cTT | cCC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 266 | L266S | CTt | TCt | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 1 | 1 | B.1.2 | 0.000009 |
ORF1ab/nsp2 | 266 | L266E | CTT | GAA | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp2 | 266 | L266del1 | cTt | c-t | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp2 | 266 | L266V | Ctt | Gtt | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp2 | 266 | L266S | CTt | TCt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.258.24 | 0.010753 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.350 | 0.002933 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 1 | 1 | B.1.351 | 0.00003 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 1 | 1 | B.1.36 | 0.000146 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.36.25 | 0.002208 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 1 | 1 | B.1.446 | 0.02 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.480 | 0.002488 |
ORF1ab/nsp2 | 266 | L266R | cTt | cGt | 1 | 1 | B.1.533 | 0.009615 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | B.1.561 | 0.000397 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.597 | 0.00463 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp2 | 266 | L266R | cTt | cGt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 266 | L266del2 | CTt | --t | 1 | 1 | B.1.617.2 | 0.000004 |
ORF1ab/nsp2 | 266 | L266H | cTt | cAt | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.1.636 | 0.006711 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | C.36 | 0.000911 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctA | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | C.4 | 0.01 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp2 | 266 | L266E | CTT | GAA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctA | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 266 | L266R | cTt | cGt | 1 | 1 | P.1 | 0.000016 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp2 | 266 | L266L | ctT | ctC | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | P.1.7 | 0.000319 |
ORF1ab/nsp2 | 266 | L266I | Ctt | Att | 1 | 1 | P.6 | 0.003145 |
ORF1ab/nsp2 | 266 | L266del | CTT | --- | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 266 | L266F | Ctt | Ttt | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp2 | 266 | L266V | Ctt | Gtt | 1 | 1 | R.1 | 0.00009 |
ORF1ab/nsp2 | 266 | L266P | cTt | cCt | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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