CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp2 : CodonNum = 263 & Codon = Ccc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp2263S263PS443PnonsynTccCcc261225980.994641592-1594

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp2263S263PTccCcc25982612All0.000497
ORF1ab/nsp2263S263PTccCcc549549B.1.1.3330.590958
ORF1ab/nsp2263S263PTccCcc422422AY.1030.00262
ORF1ab/nsp2263S263PTccCcc336336B.1.1.70.000301
ORF1ab/nsp2263S263PTccCcc208208R.10.018722
ORF1ab/nsp2263S263PTccCcc150150B.1.160.290.632911
ORF1ab/nsp2263S263PTccCcc139139AY.60.005717
ORF1ab/nsp2263S263PTccCcc137138B.1.617.20.000516
ORF1ab/nsp2263S263PTccCcc9696B.1.2430.00668
ORF1ab/nsp2263S263PTccCcc7880B.10.000714
ORF1ab/nsp2263S263PTccCcc6667AY.4.20.001431
ORF1ab/nsp2263S263PTccCcc4848AY.40.000075
ORF1ab/nsp2263S263PTccCcc4545P.10.000709
ORF1ab/nsp2263S263PTccCcc4242AY.250.000253
ORF1ab/nsp2263S263PTccCcc2121B.1.1770.000277
ORF1ab/nsp2263S263PTccCcc1616B.1.10.00029
ORF1ab/nsp2263S263PTccCcc1516B.1.20.000132
ORF1ab/nsp2263S263PTccCcc1515AY.1210.00203
ORF1ab/nsp2263S263PTccCcc1414B.1.1.3060.006138
ORF1ab/nsp2263S263PTccCcc1111AY.270.000712
ORF1ab/nsp2263S263PTccCcc1111B.1.4480.028871
ORF1ab/nsp2263S263PTccCcc1010AY.390.000247
ORF1ab/nsp2263S263PTccCcc1010B.1.1600.000312
ORF1ab/nsp2263S263PTccCcc78AY.440.000043
ORF1ab/nsp2263S263PTccCcc77B.1.360.001021
ORF1ab/nsp2263S263PTccCcc66AU.20.014528
ORF1ab/nsp2263S263PTccCcc66B.1.4560.019608
ORF1ab/nsp2263S263PTccCcc55AY.450.000608
ORF1ab/nsp2263S263PTccCcc55B.1.4290.000118
ORF1ab/nsp2263S263PTccCcc55B.1.6100.01773
ORF1ab/nsp2263S263PTccCcc44AY.1000.000184
ORF1ab/nsp2263S263PTccCcc44AY.30.00004
ORF1ab/nsp2263S263PTccCcc44B.1.1.10.001307
ORF1ab/nsp2263S263PTccCcc44B.1.3690.001141
ORF1ab/nsp2263S263PTccCcc44B.1.5260.000094
ORF1ab/nsp2263S263PTccCcc14B.1.6090.000479
ORF1ab/nsp2263S263PTccCcc33AY.1100.000338
ORF1ab/nsp2263S263PTccCcc33AY.260.000085
ORF1ab/nsp2263S263PTccCcc33AY.50.000062
ORF1ab/nsp2263S263PTccCcc33B.1.177.870.002183
ORF1ab/nsp2263S263PTccCcc22A.2.50.000998
ORF1ab/nsp2263S263PTccCcc22A.23.10.001408
ORF1ab/nsp2263S263PTccCcc22AY.1170.000169
ORF1ab/nsp2263S263PTccCcc22AY.120.10.000642
ORF1ab/nsp2263S263PTccCcc22AY.230.000139
ORF1ab/nsp2263S263PTccCcc22AY.660.002139
ORF1ab/nsp2263S263PTccCcc22B.1.1.2220.000408
ORF1ab/nsp2263S263PTccCcc22B.1.1.2970.004474
ORF1ab/nsp2263S263PTccCcc22B.1.1.5190.000079
ORF1ab/nsp2263S263PTccCcc22B.1.2340.000264
ORF1ab/nsp2263S263PTccCcc22B.1.2580.000133
ORF1ab/nsp2263S263PTccCcc22B.1.258.110.000793
ORF1ab/nsp2263S263PTccCcc22B.1.36.310.003503
ORF1ab/nsp2263S263PTccCcc22B.1.5250.000226
ORF1ab/nsp2263S263PTccCcc22N.50.003534
ORF1ab/nsp2263S263PTccCcc22P.1.150.000465
ORF1ab/nsp2263S263PTccCcc11A.10.000282
ORF1ab/nsp2263S263PTccCcc11AY.1020.000027
ORF1ab/nsp2263S263PTccCcc11AY.1140.000231
ORF1ab/nsp2263S263PTccCcc11AY.290.000016
ORF1ab/nsp2263S263PTccCcc11AY.29.10.000221
ORF1ab/nsp2263S263PTccCcc11AY.3.10.000085
ORF1ab/nsp2263S263PTccCcc11AY.360.000148
ORF1ab/nsp2263S263PTccCcc11AY.430.000004
ORF1ab/nsp2263S263PTccCcc11AY.460.000104
ORF1ab/nsp2263S263PTccCcc11AY.46.60.000072
ORF1ab/nsp2263S263PTccCcc11AY.470.000031
ORF1ab/nsp2263S263PTccCcc11AY.750.000056
ORF1ab/nsp2263S263PTccCcc11AY.80.000606
ORF1ab/nsp2263S263PTccCcc11AY.9.20.000037
ORF1ab/nsp2263S263PTccCcc11AZ.30.00152
ORF1ab/nsp2263S263PTccCcc11B.1.1.1150.008929
ORF1ab/nsp2263S263PTccCcc11B.1.1.1760.000439
ORF1ab/nsp2263S263PTccCcc11B.1.1.2140.000055
ORF1ab/nsp2263S263PTccCcc11B.1.1.2360.006897
ORF1ab/nsp2263S263PTccCcc11B.1.1.2840.000107
ORF1ab/nsp2263S263PTccCcc11B.1.1.2940.001266
ORF1ab/nsp2263S263PTccCcc11B.1.1.3160.000925
ORF1ab/nsp2263S263PTccCcc11B.1.1.3200.018182
ORF1ab/nsp2263S263PTccCcc11B.1.1.3250.025641
ORF1ab/nsp2263S263PTccCcc11B.1.1.330.000421
ORF1ab/nsp2263S263PTccCcc11B.1.1.3540.004386
ORF1ab/nsp2263S263PTccCcc11B.1.1.4480.002033
ORF1ab/nsp2263S263PTccCcc11B.1.1.630.000386
ORF1ab/nsp2263S263PTccCcc11B.1.1.700.000341
ORF1ab/nsp2263S263PTccCcc11B.1.177.40.000211
ORF1ab/nsp2263S263PTccCcc11B.1.177.460.000918
ORF1ab/nsp2263S263PTccCcc11B.1.177.570.000281
ORF1ab/nsp2263S263PTccCcc11B.1.177.70.000165
ORF1ab/nsp2263S263PTccCcc11B.1.1920.009259
ORF1ab/nsp2263S263PTccCcc11B.1.2210.000071
ORF1ab/nsp2263S263PTccCcc11B.1.2390.001221
ORF1ab/nsp2263S263PTccCcc11B.1.2410.000812
ORF1ab/nsp2263S263PTccCcc11B.1.2470.014925
ORF1ab/nsp2263S263PTccCcc11B.1.258.170.000104
ORF1ab/nsp2263S263PTccCcc11B.1.3280.03125
ORF1ab/nsp2263S263PTccCcc11B.1.36.160.001425
ORF1ab/nsp2263S263PTccCcc11B.1.36.80.001
ORF1ab/nsp2263S263PTccCcc11B.1.4590.004082
ORF1ab/nsp2263S263PTccCcc11B.1.466.20.000391
ORF1ab/nsp2263S263PTccCcc11B.1.4690.00361
ORF1ab/nsp2263S263PTccCcc11B.1.5380.008065
ORF1ab/nsp2263S263PTccCcc11B.1.596.10.009346
ORF1ab/nsp2263S263PTccCcc11B.1.617.10.000129
ORF1ab/nsp2263S263PTccCcc11B.1.6230.000536
ORF1ab/nsp2263S263PTccCcc11B.390.002331
ORF1ab/nsp2263S263PTccCcc11C.260.007353
ORF1ab/nsp2263S263PTccCcc11L.30.003546
ORF1ab/nsp2263S263PTccCcc11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.